[med-svn] [Git][med-team/minia][master] 7 commits: routine-update: New upstream version

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / minia


Commits:
8313b9f2 by Steffen Moeller at 2020-08-10T19:16:20+02:00
routine-update: New upstream version

- - - - -
aa02a815 by Steffen Moeller at 2020-08-10T19:16:20+02:00
New upstream version 3.2.1+git20200607.bfd91a7
- - - - -
0253a569 by Steffen Moeller at 2020-08-10T19:16:22+02:00
Update upstream source from tag 'upstream/3.2.1+git20200607.bfd91a7'

Update to upstream version '3.2.1+git20200607.bfd91a7'
with Debian dir ba650caee2b6ea02ae84f30eea95311aae11edaa
- - - - -
69be593a by Steffen Moeller at 2020-08-10T19:16:22+02:00
routine-update: debhelper-compat 13

- - - - -
4392d647 by Steffen Moeller at 2020-08-10T19:21:35+02:00
Moving back to the release track.

- - - - -
82ffc645 by Steffen Moeller at 2020-08-10T19:22:06+02:00
New upstream version 3.2.4
- - - - -
547b1bcf by Steffen Moeller at 2020-08-10T19:22:10+02:00
Update upstream source from tag 'upstream/3.2.4'

Update to upstream version '3.2.4'
with Debian dir f3ca7f6999c3455eaba2c7a0694915f785e75a6b
- - - - -


5 changed files:

- CMakeLists.txt
- debian/changelog
- debian/control
- debian/watch
- src/Minia.cpp


Changes:

=====================================
CMakeLists.txt
=====================================
@@ -8,7 +8,7 @@ cmake_minimum_required (VERSION 2.6)
 # The default version number is the latest official build
 SET (gatb-tool_VERSION_MAJOR 3)
 SET (gatb-tool_VERSION_MINOR 2)
-SET (gatb-tool_VERSION_PATCH 2)
+SET (gatb-tool_VERSION_PATCH 4)
 
 # But, it is possible to define another release number during a local build
 IF (DEFINED MAJOR)


=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+minia (3.2.4-1) unstable; urgency=medium
+
+  * Team upload.
+  * New upstream version
+  * debhelper-compat 13 (routine-update)
+  * d/watch - using regular releases again (up from 3.2.1 to 3.2.4)
+
+ -- Steffen Moeller <moeller at debian.org>  Mon, 10 Aug 2020 19:16:26 +0200
+
 minia (3.2.1+git20200522.4960a99-1) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -4,7 +4,7 @@ Uploaders: Olivier Sallou <osallou at debian.org>,
            Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
                cmake,
                bc,
                zlib1g-dev,


=====================================
debian/watch
=====================================
@@ -1,8 +1,8 @@
 version=4
 
-opts="mode=git,pretty=3.2.1+git%cd.%h" \
-    https://github.com/GATB/minia.git HEAD
+https://github.com/GATB/minia/releases .*/archive/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
 
-# Released version is not compatible with gatb-core 1.4.1+git20191130.664696c+dfsg
-# So stick to latest Git commit for the moment
-#  https://github.com/GATB/minia/releases .*/archive/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
+# Once upon a time, the released version was not compatible with gatb-core 1.4.1+git20191130.664696c+dfsg
+# That is we sticked to latest Git commit back then.
+#opts="mode=git,pretty=3.2.1+git%cd.%h" \
+#    https://github.com/GATB/minia.git HEAD


=====================================
src/Minia.cpp
=====================================
@@ -250,7 +250,7 @@ string Minia::assemble (/*const, removed because Simplifications isn't const any
     if (simplifyGraph)
     {
         int nbCores = getInput()->getInt(STR_NB_CORES);
-        bool verbose=true;
+        bool verbose=false;
         Simplifications<Graph_type,Node,Edge> graphSimplifications(&graph, nbCores, verbose);
 
         if (getParser()->saw("-no-tip-removal"))
@@ -309,6 +309,7 @@ string Minia::assemble (/*const, removed because Simplifications isn't const any
     /** We gather some statistics. */
     getInfo()->add (1, "stats");
     getInfo()->add (2, "traversal",         "%s", getInput()->getStr(STR_TRAVERSAL_KIND).c_str());
+    getInfo()->add (2, "nb_solid_kmers",         "%d", graph._nbSolidKmers);
     getInfo()->add (2, "nb_contigs",         "%d", nbContigs);
     getInfo()->add (2, "nb_small_contigs_discarded","%d", nbSmallContigs);
     getInfo()->add (2, "nt_assembled",      "%ld", totalNt);



View it on GitLab: https://salsa.debian.org/med-team/minia/-/compare/b74c92b79e6fb0cd0af64baaf4c550d1fd0ad722...547b1bcf225c6b1bd46389b264c415ca82eacefe

-- 
View it on GitLab: https://salsa.debian.org/med-team/minia/-/compare/b74c92b79e6fb0cd0af64baaf4c550d1fd0ad722...547b1bcf225c6b1bd46389b264c415ca82eacefe
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