Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
ed5aeee9 by Andreas Tille at 2020-08-28T13:45:01+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,29 +1,29 @@
-Last-Update: Fri, 28 Aug 2020 01:42:03 +0000
+Last-Update: Fri, 28 Aug 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 165 | {imaging,covid-19} |
+ dcmtk | 164 | {imaging,covid-19} |
orthanc | 90 | {practice,covid-19,imaging} |
orthanc-wsi | 46 | {his,laboratory,covid-19,imaging,practice,oncology} |
- gdcm | 36 | {imaging-dev} |
+ gdcm | 33 | {imaging-dev} |
dicom3tools | 28 | {imaging} |
+ htsjdk | 24 | {bio-dev} |
dicomscope | 23 | {imaging} |
- htsjdk | 23 | {bio-dev} |
gnumed-server | 20 | {covid-19,practice} |
gdcm | 15 | {covid-19,imaging} |
- dcm2niix | 14 | {imaging} |
ngs-sdk | 14 | {bio-dev} |
- invesalius | 13 | {imaging} |
- gdcm | 12 | {imaging-dev} |
- insighttoolkit4 | 12 | {imaging-dev} |
+ dcm2niix | 13 | {imaging} |
+ gdcm | 13 | {imaging-dev} |
+ invesalius | 12 | {imaging} |
+ insighttoolkit4 | 11 | {imaging-dev} |
minc-tools | 11 | {imaging} |
openslide | 11 | {imaging} |
adun.app | 10 | {bio} |
- nifticlib | 10 | {imaging-dev} |
pixelmed | 10 | {imaging} |
melting | 9 | {cloud,bio} |
ngs-sdk | 9 | {bio-dev} |
nifticlib | 9 | {imaging} |
+ nifticlib | 9 | {imaging-dev} |
plastimatch | 9 | {imaging} |
fastlink | 8 | {bio,cloud} |
librg-utils-perl | 8 | {bio} |
@@ -31,13 +31,13 @@ Last-Update: Fri, 28 Aug 2020 01:42:03 +0000
libminc | 7 | {imaging-dev} |
obitools | 7 | {bio} |
orthanc-webviewer | 7 | {imaging} |
- sigma-align | 7 | {bio,cloud,bio-phylogeny} |
treeview | 7 | {bio,bio-phylogeny} |
vtk-dicom | 7 | {imaging} |
biojava-live | 6 | {bio-dev} |
dicompyler | 6 | {oncology} |
jebl2 | 6 | {bio-dev} |
king | 6 | {typesetting,imaging} |
+ multiqc | 6 | {bio,covid-19} |
pymia | 6 | {imaging-dev} |
sibsim4 | 6 | {bio,cloud} |
bart-view | 5 | {imaging} |
@@ -49,7 +49,6 @@ Last-Update: Fri, 28 Aug 2020 01:42:03 +0000
libncl | 5 | {bio} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
mipe | 5 | {cloud,bio} |
- multiqc | 5 | {bio,covid-19} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
phyutility | 5 | {bio,cloud} |
piler | 5 | {bio} |
@@ -58,6 +57,7 @@ Last-Update: Fri, 28 Aug 2020 01:42:03 +0000
rdp-classifier | 5 | {bio} |
spread-phy | 5 | {bio-phylogeny,bio} |
anfo | 4 | {cloud,bio} |
+ busco | 4 | {bio,covid-19} |
embassy-domainatrix | 4 | {cloud,bio} |
embassy-domalign | 4 | {cloud,bio} |
embassy-domsearch | 4 | {cloud,bio} |
@@ -81,12 +81,10 @@ Last-Update: Fri, 28 Aug 2020 01:42:03 +0000
beast-mcmc | 3 | {bio,bio-phylogeny} |
biomaj3-cli | 3 | {cloud} |
brig | 3 | {bio} |
- busco | 3 | {bio,covid-19} |
dindel | 3 | {bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
gatb-core | 3 | {bio} |
- harvest-tools | 3 | {bio} |
jellyfish1 | 3 | {bio} |
jmodeltest | 3 | {bio-phylogeny,bio} |
lagan | 3 | {bio} |
@@ -128,7 +126,6 @@ Last-Update: Fri, 28 Aug 2020 01:42:03 +0000
logol | 2 | {bio} |
mhap | 2 | {bio-ngs,bio} |
murasaki | 2 | {bio} |
- openslide | 2 | {imaging-dev} |
patman | 2 | {bio} |
pbdagcon | 2 | {bio} |
pscan-chip | 2 | {bio} |
@@ -142,7 +139,6 @@ Last-Update: Fri, 28 Aug 2020 01:42:03 +0000
soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
surankco | 2 | {bio} |
- sweed | 2 | {bio} |
tvc | 2 | {bio} |
velvetoptimiser | 2 | {bio} |
yaha | 2 | {bio} |
@@ -150,7 +146,6 @@ Last-Update: Fri, 28 Aug 2020 01:42:03 +0000
biosig4c++ | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
- conda-package-handling | 1 | {bio-dev,bio} |
dextractor | 1 | {bio,covid-19} |
embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
@@ -158,7 +153,7 @@ Last-Update: Fri, 28 Aug 2020 01:42:03 +0000
intake | 1 | {bio-dev,bio} |
libsbml | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- lighter | 1 | {covid-19,bio} |
+ openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
plasmidseeker | 1 | {bio} |
@@ -180,6 +175,7 @@ Last-Update: Fri, 28 Aug 2020 01:42:03 +0000
biosyntax | 0 | {bio} |
bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
+ conda-package-handling | 0 | {bio-dev,bio} |
ctn | 0 | {imaging-dev} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
@@ -214,6 +210,7 @@ Last-Update: Fri, 28 Aug 2020 01:42:03 +0000
libseqlib | 0 | {bio-dev} |
libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
+ lighter | 0 | {covid-19,bio} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
@@ -230,8 +227,8 @@ Last-Update: Fri, 28 Aug 2020 01:42:03 +0000
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
scrappie | 0 | {covid-19,bio} |
@@ -253,5 +250,5 @@ Last-Update: Fri, 28 Aug 2020 01:42:03 +0000
orthanc-python | -1 | {covid-19} |
shovill | -1 | {bio,covid-19} |
sight | -1 | {imaging-dev} |
-(280 rows)
+(277 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ed5aeee924466236418e20e7dbe6f8ce0775018c
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ed5aeee924466236418e20e7dbe6f8ce0775018c
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