[med-svn] [Git][med-team/parsnp][master] 5 commits: routine-update: New upstream version

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / parsnp


Commits:
b30b4243 by Nilesh Patra at 2020-12-01T18:13:50+05:30
routine-update: New upstream version

- - - - -
2a23b71a by Nilesh Patra at 2020-12-01T18:13:51+05:30
New upstream version 1.5.4+dfsg
- - - - -
a469129f by Nilesh Patra at 2020-12-01T18:13:53+05:30
Update upstream source from tag 'upstream/1.5.4+dfsg'

Update to upstream version '1.5.4+dfsg'
with Debian dir 216dd80a46537771fa1411f80b81e9865ebaeaec
- - - - -
5127f54d by Nilesh Patra at 2020-12-01T18:13:53+05:30
routine-update: Standards-Version: 4.5.1

- - - - -
7bf28601 by Nilesh Patra at 2020-12-01T18:14:10+05:30
routine-update: Ready to upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/control
- parsnp


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+parsnp (1.5.4+dfsg-1) unstable; urgency=medium
+
+  * Team upload.
+  * New upstream version
+  * Standards-Version: 4.5.1 (routine-update)
+
+ -- Nilesh Patra <npatra974 at gmail.com>  Tue, 01 Dec 2020 18:14:10 +0530
+
 parsnp (1.5.3+dfsg-2) unstable; urgency=medium
 
   * Team Upload.


=====================================
debian/control
=====================================
@@ -9,7 +9,7 @@ Build-Depends: debhelper-compat (= 13),
                python3-setuptools,
                cython3,
                libmuscle-dev
-Standards-Version: 4.5.0
+Standards-Version: 4.5.1
 Vcs-Browser: https://salsa.debian.org/med-team/parsnp
 Vcs-Git: https://salsa.debian.org/med-team/parsnp.git
 Homepage: https://harvest.readthedocs.org/en/latest/content/parsnp.html


=====================================
parsnp
=====================================
@@ -14,7 +14,7 @@ import signal
 import inspect
 from multiprocessing import *
 
-__version__ = "1.5.3"
+__version__ = "1.5.4"
 reroot_tree = True #use --midpoint-reroot
 
 try:
@@ -1317,6 +1317,7 @@ Please verify recruited genomes are all strain of interest""")
                             bedfile_dict[srpos] = "1\t%s\t%s\tREC\t%.3f\t+\n"%(srpos,pos+50+block_spos,eval)
                         else:
                             chrnum = 1
+                            chr_spos = list(ref_seqs.keys())
                             for cs in ref_seqs:
                                 if block_spos < chr_spos:
                                     chrnum = ref_seqs[cs]



View it on GitLab: https://salsa.debian.org/med-team/parsnp/-/compare/f57542858423f6082acfd0bce143d078587b2ed0...7bf28601bd95efc84dfc48fd0e910799032b984a

-- 
View it on GitLab: https://salsa.debian.org/med-team/parsnp/-/compare/f57542858423f6082acfd0bce143d078587b2ed0...7bf28601bd95efc84dfc48fd0e910799032b984a
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