[med-svn] [Git][med-team/parsnp][upstream] New upstream version 1.5.4+dfsg

[Nilesh Patra]

Nilesh Patra pushed to branch upstream at Debian Med / parsnp


Commits:
2a23b71a by Nilesh Patra at 2020-12-01T18:13:51+05:30
New upstream version 1.5.4+dfsg
- - - - -


1 changed file:

- parsnp


Changes:

=====================================
parsnp
=====================================
@@ -14,7 +14,7 @@ import signal
 import inspect
 from multiprocessing import *
 
-__version__ = "1.5.3"
+__version__ = "1.5.4"
 reroot_tree = True #use --midpoint-reroot
 
 try:
@@ -1317,6 +1317,7 @@ Please verify recruited genomes are all strain of interest""")
                             bedfile_dict[srpos] = "1\t%s\t%s\tREC\t%.3f\t+\n"%(srpos,pos+50+block_spos,eval)
                         else:
                             chrnum = 1
+                            chr_spos = list(ref_seqs.keys())
                             for cs in ref_seqs:
                                 if block_spos < chr_spos:
                                     chrnum = ref_seqs[cs]



View it on GitLab: https://salsa.debian.org/med-team/parsnp/-/commit/2a23b71a8e230b0cff0e487b80e6c908b16c11da

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View it on GitLab: https://salsa.debian.org/med-team/parsnp/-/commit/2a23b71a8e230b0cff0e487b80e6c908b16c11da
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