[med-svn] [Git][med-team/nanostat][master] 2 commits: Simply copy upstream test code to run-unit-test

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / nanostat


Commits:
8a7bb840 by Andreas Tille at 2020-12-01T14:33:41+01:00
Simply copy upstream test code to run-unit-test

- - - - -
34f22a1b by Andreas Tille at 2020-12-01T14:36:01+01:00
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- − debian/nanostat.examples
- debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-nanostat (1.4.0-3) UNRELEASED; urgency=medium
+nanostat (1.4.0-3) unstable; urgency=medium
 
   * Team upload
   * Add autopkgtest
@@ -8,7 +8,7 @@ nanostat (1.4.0-3) UNRELEASED; urgency=medium
   * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
     Repository-Browse.
 
- -- Andreas Tille <tille at debian.org>  Tue, 01 Dec 2020 14:06:06 +0100
+ -- Andreas Tille <tille at debian.org>  Tue, 01 Dec 2020 14:34:11 +0100
 
 nanostat (1.4.0-2) unstable; urgency=medium
 


=====================================
debian/nanostat.examples deleted
=====================================
@@ -1 +0,0 @@
-scripts/*


=====================================
debian/tests/run-unit-test
=====================================
@@ -1,5 +1,6 @@
 #!/bin/bash
 set -e
+set -x
 
 pkg=nanostat
 data=python3-nanoget
@@ -10,11 +11,15 @@ if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
   trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
 fi
 
-cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
 cp -a /usr/share/doc/${data}/examples/nanotest "${AUTOPKGTEST_TMP}"
 
 cd "${AUTOPKGTEST_TMP}"
 
 gunzip nanotest/[as]*.gz
 
-sh test.sh
+NanoStat -h
+
+NanoStat --fastq nanotest/reads.fastq.gz --prefix tester
+NanoStat --bam nanotest/alignment.bam -o outdir
+NanoStat --summary nanotest/sequencing_summary.txt -n testerfile
+NanoStat --fasta nanotest/reads.fa.gz



View it on GitLab: https://salsa.debian.org/med-team/nanostat/-/compare/8dc99a8d9a34137784bfb0f491187eec20b6a041...34f22a1b50aa2991ede14a7f72842cee954c0df4

-- 
View it on GitLab: https://salsa.debian.org/med-team/nanostat/-/compare/8dc99a8d9a34137784bfb0f491187eec20b6a041...34f22a1b50aa2991ede14a7f72842cee954c0df4
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