[med-svn] [Git][med-team/q2-taxa][master] 10 commits: New upstream version 2020.11.0

Wed Dec 2 12:26:40 GMT 2020


Steffen Möller pushed to branch master at Debian Med / q2-taxa


Commits:
ba46003d by Steffen Moeller at 2020-12-02T13:13:03+01:00
New upstream version 2020.11.0
- - - - -
4cd4d92a by Steffen Moeller at 2020-12-02T13:13:03+01:00
routine-update: New upstream version

- - - - -
e049c49a by Steffen Moeller at 2020-12-02T13:13:04+01:00
Update upstream source from tag 'upstream/2020.11.0'

Update to upstream version '2020.11.0'
with Debian dir 3ac0e84af79828459e3ebc57bf74bb57aa8122c0
- - - - -
156d6583 by Steffen Moeller at 2020-12-02T13:13:04+01:00
routine-update: Standards-Version: 4.5.1

- - - - -
12c976d0 by Steffen Moeller at 2020-12-02T13:13:04+01:00
routine-update: debhelper-compat 13

- - - - -
1f762286 by Steffen Moeller at 2020-12-02T13:13:06+01:00
routine-update: Add salsa-ci file

- - - - -
3d71508f by Steffen Moeller at 2020-12-02T13:13:07+01:00
routine-update: Rules-Requires-Root: no

- - - - -
8fb8f383 by Steffen Moeller at 2020-12-02T13:13:13+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

- - - - -
e24f79e8 by Steffen Moeller at 2020-12-02T13:13:27+01:00
routine-update: Ready to upload to unstable

- - - - -
72ef4057 by Steffen Moeller at 2020-12-02T13:26:08+01:00
Builds but JavaScript situation needs some work

- - - - -


17 changed files:

- LICENSE
- debian/changelog
- debian/control
- debian/rules
- + debian/salsa-ci.yml
- debian/upstream/metadata
- q2_taxa/__init__.py
- q2_taxa/_method.py
- q2_taxa/_util.py
- q2_taxa/_version.py
- q2_taxa/_visualizer.py
- q2_taxa/plugin_setup.py
- q2_taxa/tests/__init__.py
- q2_taxa/tests/test_methods.py
- q2_taxa/tests/test_plugin_setup.py
- q2_taxa/tests/test_visualizer.py
- setup.py


Changes:

=====================================
LICENSE
=====================================
@@ -1,6 +1,6 @@
 BSD 3-Clause License
 
-Copyright (c) 2016-2019, QIIME 2 development team.
+Copyright (c) 2016-2020, QIIME 2 development team.
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without


=====================================
debian/changelog
=====================================
@@ -1,5 +1,6 @@
-q2-taxa (2019.10.0-1) UNRELEASED; urgency=medium
+q2-taxa (2020.11.0-1) UNRELEASED; urgency=medium
 
+  [ Liubov Chuprikova ]
   * Initial release (Closes: #932050)
   * TODO: dependencies to package:
        d3-scale-chromatic (https://github.com/d3/d3-scale-chromatic)
@@ -7,4 +8,12 @@ q2-taxa (2019.10.0-1) UNRELEASED; urgency=medium
        natural-sort (https://github.com/overset/javascript-natural-sort)
   * TODO: mention q2_taxa/assets/barplot/*
 
- -- Liubov Chuprikova <chuprikovalv at gmail.com>  Sat, 25 Jan 2020 17:32:25 +0100
+  [ Steffen Moeller ]
+  * Standards-Version: 4.5.1 (routine-update)
+  * debhelper-compat 13 (routine-update)
+  * Add salsa-ci file (routine-update)
+  * Rules-Requires-Root: no (routine-update)
+  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
+    Repository-Browse.
+
+ -- Steffen Moeller <moeller at debian.org>  Wed, 02 Dec 2020 13:13:13 +0100


=====================================
debian/control
=====================================
@@ -1,23 +1,25 @@
 Source: q2-taxa
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Liubov Chuprikova <chuprikovalv at gmail.com>
+Uploaders: Liubov Chuprikova <chuprikovalv at gmail.com>,
+           Steffen Moeller <moeller at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
                dh-python,
                python3,
                python3-setuptools,
                python3-pytest-cov,
                python3-pandas,
                nodejs,
-               qiime (>= 2019.10.0),
-               q2templates (>= 2019.10.0),
+               qiime (>= 2020.11.0),
+               q2templates,
                q2-types,
                libjs-d3
-Standards-Version: 4.4.1
+Standards-Version: 4.5.1
 Vcs-Browser: https://salsa.debian.org/med-team/q2-taxa
 Vcs-Git: https://salsa.debian.org/med-team/q2-taxa.git
 Homepage: https://qiime2.org/
+Rules-Requires-Root: no
 
 Package: q2-taxa
 Architecture: all


=====================================
debian/rules
=====================================
@@ -22,3 +22,8 @@ override_dh_auto_test:
 ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	dh_auto_test -- -s custom --test-args="cd {build_dir}; py.test-3 --cov=q2_taxa"
 endif
+
+override_dh_auto_clean:
+	dh_auto_clean
+	rm -f q2_taxa.egg-info/PKG-INFO q2_taxa.egg-info/SOURCES.txt q2_taxa.egg-info/dependency_links.txt q2_taxa.egg-info/entry_points.txt q2_taxa.egg-info/not-zip-safe q2_taxa.egg-info/top_level.txt
+


=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml


=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,5 @@
+Bug-Database: https://github.com/qiime2/q2-taxa/issues
+Bug-Submit: https://github.com/qiime2/q2-taxa/issues/new
 Reference:
  - Author: >
     Evan Bolyen and Jai Ram Rideout and Matthew R Dillon and Nicholas A
@@ -42,3 +44,5 @@ Reference:
    DOI: 10.1038/s41587-019-0209-9
    URL: https://www.nature.com/articles/s41587-019-0209-9
    eprint: https://www.nature.com/articles/s41587-019-0209-9.pdf
+Repository: https://github.com/qiime2/q2-taxa.git
+Repository-Browse: https://github.com/qiime2/q2-taxa


=====================================
q2_taxa/__init__.py
=====================================
@@ -1,5 +1,5 @@
 # ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
 #
 # Distributed under the terms of the Modified BSD License.
 #


=====================================
q2_taxa/_method.py
=====================================
@@ -1,5 +1,5 @@
 # ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
 #
 # Distributed under the terms of the Modified BSD License.
 #


=====================================
q2_taxa/_util.py
=====================================
@@ -1,5 +1,5 @@
 # ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
 #
 # Distributed under the terms of the Modified BSD License.
 #


=====================================
q2_taxa/_version.py
=====================================
@@ -23,9 +23,9 @@ def get_keywords():
     # setup.py/versioneer.py will grep for the variable names, so they must
     # each be defined on a line of their own. _version.py will just call
     # get_keywords().
-    git_refnames = " (tag: 2019.10.0)"
-    git_full = "32a88e36b612e5a6b9fa1239076096e91b7ffae1"
-    git_date = "2019-11-01 01:04:24 +0000"
+    git_refnames = " (HEAD -> master, tag: 2020.11.0)"
+    git_full = "a1df1f9eb4d1d639232837330a553afdabcbf7ec"
+    git_date = "2020-11-25 17:13:07 +0000"
     keywords = {"refnames": git_refnames, "full": git_full, "date": git_date}
     return keywords
 


=====================================
q2_taxa/_visualizer.py
=====================================
@@ -1,5 +1,5 @@
 # ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
 #
 # Distributed under the terms of the Modified BSD License.
 #


=====================================
q2_taxa/plugin_setup.py
=====================================
@@ -1,5 +1,5 @@
 # ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
 #
 # Distributed under the terms of the Modified BSD License.
 #


=====================================
q2_taxa/tests/__init__.py
=====================================
@@ -1,5 +1,5 @@
 # ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
 #
 # Distributed under the terms of the Modified BSD License.
 #


=====================================
q2_taxa/tests/test_methods.py
=====================================
@@ -1,5 +1,5 @@
 # ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
 #
 # Distributed under the terms of the Modified BSD License.
 #


=====================================
q2_taxa/tests/test_plugin_setup.py
=====================================
@@ -1,5 +1,5 @@
 # ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
 #
 # Distributed under the terms of the Modified BSD License.
 #


=====================================
q2_taxa/tests/test_visualizer.py
=====================================
@@ -1,5 +1,5 @@
 # ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
 #
 # Distributed under the terms of the Modified BSD License.
 #


=====================================
setup.py
=====================================
@@ -1,5 +1,5 @@
 # ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
 #
 # Distributed under the terms of the Modified BSD License.
 #



View it on GitLab: https://salsa.debian.org/med-team/q2-taxa/-/compare/6ea0a3ab55436dad22a25581889dd400476990b1...72ef405744db0bb356ef5fd0445774762cf8fa7a

-- 
View it on GitLab: https://salsa.debian.org/med-team/q2-taxa/-/compare/6ea0a3ab55436dad22a25581889dd400476990b1...72ef405744db0bb356ef5fd0445774762cf8fa7a
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