[med-svn] [Git][med-team/q2templates][master] 10 commits: routine-update: New upstream version
Steffen Möller
gitlab at salsa.debian.org
Wed Dec 2 16:45:23 GMT 2020
Steffen Möller pushed to branch master at Debian Med / q2templates
Commits:
e1e27bfb by Steffen Moeller at 2020-12-02T17:38:29+01:00
routine-update: New upstream version
- - - - -
68a67cc9 by Steffen Moeller at 2020-12-02T17:38:30+01:00
New upstream version 2020.11.0+dfsg
- - - - -
7ffdb61e by Steffen Moeller at 2020-12-02T17:38:30+01:00
Update upstream source from tag 'upstream/2020.11.0+dfsg'
Update to upstream version '2020.11.0+dfsg'
with Debian dir 0ec0366580eed705f401ccd037721b9f9805b035
- - - - -
8da91a9b by Steffen Moeller at 2020-12-02T17:38:30+01:00
routine-update: Standards-Version: 4.5.1
- - - - -
a94243c6 by Steffen Moeller at 2020-12-02T17:38:30+01:00
routine-update: debhelper-compat 13
- - - - -
0e7fd134 by Steffen Moeller at 2020-12-02T17:38:33+01:00
routine-update: Add salsa-ci file
- - - - -
3194dc90 by Steffen Moeller at 2020-12-02T17:38:34+01:00
routine-update: Rules-Requires-Root: no
- - - - -
d30e219c by Steffen Moeller at 2020-12-02T17:38:35+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
- - - - -
cf7be766 by Steffen Moeller at 2020-12-02T17:38:49+01:00
routine-update: Ready to upload to unstable
- - - - -
4e5f207b by Steffen Moeller at 2020-12-02T17:45:08+01:00
Manual polishing for new upstream version.
- - - - -
18 changed files:
- LICENSE
- ci/recipe/meta.yaml
- debian/changelog
- debian/control
- debian/rules
- + debian/salsa-ci.yml
- debian/upstream/metadata
- q2templates/__init__.py
- q2templates/_templates.py
- q2templates/_version.py
- q2templates/templates/assets/css/base-template.css
- q2templates/templates/assets/css/tab-parent.css
- q2templates/templates/assets/js/child.js
- q2templates/templates/assets/js/parent.js
- q2templates/tests/__init__.py
- q2templates/tests/test_util.py
- q2templates/util.py
- setup.py
Changes:
=====================================
LICENSE
=====================================
@@ -1,6 +1,6 @@
BSD 3-Clause License
-Copyright (c) 2016-2019, QIIME 2 development team.
+Copyright (c) 2016-2020, QIIME 2 development team.
All rights reserved.
Redistribution and use in source and binary forms, with or without
=====================================
ci/recipe/meta.yaml
=====================================
@@ -21,7 +21,7 @@ requirements:
- python {{ python }}
- setuptools
- jinja2
- - pandas
+ - pandas >=1
test:
imports:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,17 @@
+q2templates (2020.11.0+dfsg-1) unstable; urgency=medium
+
+ * Team upload.
+ * New upstream version
+ * Standards-Version: 4.5.1 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
+ Repository-Browse.
+ * d/u/metadata: Added ref to conda, yamllint
+
+ -- Steffen Moeller <moeller at debian.org> Wed, 02 Dec 2020 17:38:35 +0100
+
q2templates (2019.10.0+dfsg-2) unstable; urgency=medium
* Team upload.
=====================================
debian/control
=====================================
@@ -3,17 +3,18 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
Uploaders: Liubov Chuprikova <chuprikovalv at gmail.com>
Section: science
Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
dh-python,
python3,
python3-setuptools,
python3-pytest,
python3-pandas,
python3-jinja2
-Standards-Version: 4.4.1
+Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/q2templates
Vcs-Git: https://salsa.debian.org/med-team/q2templates.git
Homepage: https://qiime2.org/
+Rules-Requires-Root: no
Package: q2templates
Architecture: all
@@ -48,3 +49,5 @@ Description: Design template package for QIIME 2 Plugins
can view a list of plugins that are currently available on the QIIME 2 plugin
availability page. The future plugins page lists plugins that are being
developed.
+ .
+ This package provides templates for QIIME 2 plugins.
=====================================
debian/rules
=====================================
@@ -21,3 +21,9 @@ override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
dh_auto_test -- -s custom --test-args="cd {build_dir}; py.test-3"
endif
+
+override_dh_auto_clean:
+ dh_auto_clean
+ rm -rf .pybuild
+ rm -f q2templates.egg-info/PKG-INFO q2templates.egg-info/SOURCES.txt q2templates.egg-info/dependency_links.txt q2templates.egg-info/not-zip-safe q2templates.egg-info/top_level.txt
+
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/upstream/metadata
=====================================
@@ -1,5 +1,7 @@
+Bug-Database: https://github.com/qiime2/q2templates/issues
+Bug-Submit: https://github.com/qiime2/q2templates/issues/new
Reference:
-- Author: >
+ - Author: >
Evan Bolyen and Jai Ram Rideout and Matthew R Dillon and Nicholas A
Bokulich and Christian Abnet and Gabriel A Al-Ghalith and Harriet
Alexander and Eric J Alm and Manimozhiyan Arumugam and Francesco
@@ -33,13 +35,21 @@ Reference:
Wang and Jonathan Warren and Kyle C Weber and Chase HD Williamson
and Amy D Willis and Zhenjiang Zech Xu and Jesse R Zaneveld and
Yilong Zhang and Qiyun Zhu and Rob Knight and J Gregory Caporaso
- Title: >
+ Title: >
Reproducible, interactive, scalable and extensible microbiome data
science using QIIME 2
- Journal: Nature Biotechnology
- Year: 2019
- Volume: 37
- DOI: 10.1038/s41587-019-0209-9
- URL: https://www.nature.com/articles/s41587-019-0209-9
- eprint: https://www.nature.com/articles/s41587-019-0209-9.pdf
-Repository: https://github.com/qiime2/q2templates
+ Journal: Nature Biotechnology
+ Year: 2019
+ Volume: 37
+ DOI: 10.1038/s41587-019-0209-9
+ URL: https://www.nature.com/articles/s41587-019-0209-9
+ eprint: https://www.nature.com/articles/s41587-019-0209-9.pdf
+Repository: https://github.com/qiime2/q2templates.git
+Repository-Browse: https://github.com/qiime2/q2templates
+Registry:
+ - Name: conda:qiime2
+ Entry: q2templates
+ - Name: conda:bioconda
+ Entry: NA
+ - Name: bio.tools
+ Entry: NA
=====================================
q2templates/__init__.py
=====================================
@@ -1,5 +1,5 @@
# ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
=====================================
q2templates/_templates.py
=====================================
@@ -1,5 +1,5 @@
# ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
=====================================
q2templates/_version.py
=====================================
@@ -23,9 +23,9 @@ def get_keywords():
# setup.py/versioneer.py will grep for the variable names, so they must
# each be defined on a line of their own. _version.py will just call
# get_keywords().
- git_refnames = " (tag: 2019.10.0)"
- git_full = "2ea56bdbdb44d38e1bdbc9f9516cc42793911321"
- git_date = "2019-11-01 01:04:25 +0000"
+ git_refnames = " (HEAD -> master, tag: 2020.11.0)"
+ git_full = "14e0b7fcb48a3350798eeb1aa6606f49e563f115"
+ git_date = "2020-11-25 17:13:09 +0000"
keywords = {"refnames": git_refnames, "full": git_full, "date": git_date}
return keywords
=====================================
q2templates/templates/assets/css/base-template.css
=====================================
@@ -1,6 +1,6 @@
/*
----------------------------------------------------------------------------
-Copyright (c) 2016-2019, QIIME 2 development team.
+Copyright (c) 2016-2020, QIIME 2 development team.
Distributed under the terms of the Modified BSD License.
=====================================
q2templates/templates/assets/css/tab-parent.css
=====================================
@@ -1,6 +1,6 @@
/*
----------------------------------------------------------------------------
-Copyright (c) 2016-2019, QIIME 2 development team.
+Copyright (c) 2016-2020, QIIME 2 development team.
Distributed under the terms of the Modified BSD License.
=====================================
q2templates/templates/assets/js/child.js
=====================================
@@ -1,5 +1,5 @@
// ----------------------------------------------------------------------------
-// Copyright (c) 2016-2019, QIIME 2 development team.
+// Copyright (c) 2016-2020, QIIME 2 development team.
//
// Distributed under the terms of the Modified BSD License.
//
=====================================
q2templates/templates/assets/js/parent.js
=====================================
@@ -1,5 +1,5 @@
// ----------------------------------------------------------------------------
-// Copyright (c) 2016-2019, QIIME 2 development team.
+// Copyright (c) 2016-2020, QIIME 2 development team.
//
// Distributed under the terms of the Modified BSD License.
//
=====================================
q2templates/tests/__init__.py
=====================================
@@ -1,5 +1,5 @@
# ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
=====================================
q2templates/tests/test_util.py
=====================================
@@ -1,5 +1,5 @@
# ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
=====================================
q2templates/util.py
=====================================
@@ -1,5 +1,5 @@
# ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
=====================================
setup.py
=====================================
@@ -1,5 +1,5 @@
# ----------------------------------------------------------------------------
-# Copyright (c) 2016-2019, QIIME 2 development team.
+# Copyright (c) 2016-2020, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
View it on GitLab: https://salsa.debian.org/med-team/q2templates/-/compare/474ffc8c503c316bf81a436be36a67b99d3bb329...4e5f207b07f8ef5b6b8c35b57d992a1651b13702
--
View it on GitLab: https://salsa.debian.org/med-team/q2templates/-/compare/474ffc8c503c316bf81a436be36a67b99d3bb329...4e5f207b07f8ef5b6b8c35b57d992a1651b13702
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