Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d9199480 by Andreas Tille at 2020-12-03T13:45:32+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,49 +1,50 @@
-Last-Update: Thu, 03 Dec 2020 01:42:04 +0000
+Last-Update: Thu, 03 Dec 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 187 | {imaging,covid-19} |
- orthanc | 99 | {covid-19,imaging,practice} |
- orthanc-wsi | 49 | {his,oncology,imaging,laboratory,covid-19,practice} |
+ dcmtk | 184 | {covid-19,imaging} |
+ orthanc | 97 | {imaging,practice,covid-19} |
+ orthanc-wsi | 47 | {laboratory,his,oncology,imaging,practice,covid-19} |
gdcm | 36 | {imaging-dev} |
- htsjdk | 29 | {bio-dev} |
- dcm2niix | 22 | {imaging} |
- gdcm | 22 | {covid-19,imaging} |
- dicom3tools | 21 | {imaging} |
- dicomscope | 20 | {imaging} |
- ngs-sdk | 18 | {bio-dev} |
+ htsjdk | 30 | {bio-dev} |
+ dicom3tools | 22 | {imaging} |
+ dcm2niix | 21 | {imaging} |
+ gdcm | 21 | {imaging,covid-19} |
+ dicomscope | 19 | {imaging} |
+ ngs-sdk | 19 | {bio-dev} |
gnumed-server | 17 | {covid-19,practice} |
adun.app | 15 | {bio} |
- nifticlib | 15 | {imaging} |
- minc-tools | 14 | {imaging} |
+ nifticlib | 14 | {imaging} |
+ gdcm | 13 | {imaging-dev} |
invesalius | 13 | {imaging} |
- gdcm | 12 | {imaging-dev} |
+ minc-tools | 13 | {imaging} |
+ ngs-sdk | 12 | {bio-dev} |
ngs-sdk | 11 | {bio-dev} |
nifticlib | 11 | {imaging-dev} |
pixelmed | 11 | {imaging} |
- king | 10 | {imaging,typesetting} |
- ngs-sdk | 10 | {bio-dev} |
openslide | 10 | {imaging} |
- plastimatch | 10 | {imaging} |
- biosig | 9 | {imaging,physics} |
+ king | 9 | {imaging,typesetting} |
orthanc-webviewer | 9 | {imaging} |
- vtk-dicom | 9 | {imaging} |
+ plastimatch | 9 | {imaging} |
+ biosig | 8 | {imaging,physics} |
+ insighttoolkit4 | 8 | {imaging-dev} |
librg-utils-perl | 8 | {bio} |
- melting | 8 | {cloud,bio} |
+ melting | 8 | {bio,cloud} |
+ vtk-dicom | 8 | {imaging} |
ea-utils | 7 | {bio} |
- insighttoolkit4 | 7 | {imaging-dev} |
jebl2 | 7 | {bio-dev} |
seqsero | 7 | {bio} |
treeview | 7 | {bio-phylogeny,bio} |
- bamkit | 6 | {bio,covid-19} |
+ bamkit | 6 | {covid-19,bio} |
bart-view | 6 | {imaging} |
biojava-live | 6 | {bio-dev} |
- fastlink | 6 | {bio,cloud} |
- multiqc | 6 | {bio,covid-19} |
+ fastlink | 6 | {cloud,bio} |
+ multiqc | 6 | {covid-19,bio} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
rambo-k | 6 | {bio} |
- arden | 5 | {cloud,bio} |
+ arden | 5 | {bio,cloud} |
dicompyler | 5 | {oncology} |
+ elastix | 5 | {imaging} |
getdata | 5 | {bio} |
libdivsufsort | 5 | {bio-dev} |
libpal-java | 5 | {bio-dev} |
@@ -51,22 +52,20 @@ Last-Update: Thu, 03 Dec 2020 01:42:04 +0000
obitools | 5 | {bio} |
orthanc-mysql | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
- paraclu | 5 | {bio,cloud} |
+ paraclu | 5 | {cloud,bio} |
pymia | 5 | {imaging-dev} |
- salmon | 5 | {covid-19,bio} |
- spread-phy | 5 | {bio,bio-phylogeny} |
+ salmon | 5 | {bio,covid-19} |
+ spread-phy | 5 | {bio-phylogeny,bio} |
stacks | 5 | {bio} |
staden | 5 | {bio} |
anfo | 4 | {bio,cloud} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
- biomaj3-cli | 4 | {cloud} |
- bio-tradis | 4 | {bio-dev,bio} |
+ bio-tradis | 4 | {bio,bio-dev} |
ecopcr | 4 | {bio} |
- elastix | 4 | {imaging} |
embassy-domainatrix | 4 | {cloud,bio} |
embassy-domalign | 4 | {bio,cloud} |
ipig | 4 | {bio} |
- jmodeltest | 4 | {bio,bio-phylogeny} |
+ jmodeltest | 4 | {bio-phylogeny,bio} |
libminc | 4 | {imaging-dev} |
libncl | 4 | {bio} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
@@ -74,26 +73,26 @@ Last-Update: Thu, 03 Dec 2020 01:42:04 +0000
metaphlan2 | 4 | {bio} |
mrs | 4 | {bio} |
phybin | 4 | {bio} |
- phyutility | 4 | {bio,cloud} |
+ phyutility | 4 | {cloud,bio} |
piler | 4 | {bio} |
placnet | 4 | {bio} |
- predictprotein | 4 | {bio} |
prottest | 4 | {bio-phylogeny,bio} |
rdp-alignment | 4 | {bio} |
rdp-classifier | 4 | {bio} |
saint | 4 | {bio} |
- sibsim4 | 4 | {cloud,bio} |
+ sibsim4 | 4 | {bio,cloud} |
spaced | 4 | {bio} |
tracetuner | 4 | {bio} |
- zalign | 4 | {bio,cloud} |
+ zalign | 4 | {cloud,bio} |
assemblytics | 3 | {bio} |
- biomaj3-daemon | 3 | {bio} |
+ biomaj3-cli | 3 | {cloud} |
bitseq | 3 | {bio} |
brig | 3 | {bio} |
- clonalframeml | 3 | {covid-19,bio} |
+ busco | 3 | {bio,covid-19} |
+ clonalframeml | 3 | {bio,covid-19} |
clonalorigin | 3 | {bio} |
dindel | 3 | {bio} |
- embassy-domsearch | 3 | {bio,cloud} |
+ embassy-domsearch | 3 | {cloud,bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
ghmm | 3 | {bio} |
@@ -101,15 +100,15 @@ Last-Update: Thu, 03 Dec 2020 01:42:04 +0000
lamarc | 3 | {bio} |
logol | 3 | {bio} |
mauve-aligner | 3 | {bio} |
- mhap | 3 | {bio-ngs,bio} |
+ mhap | 3 | {bio,bio-ngs} |
microbegps | 3 | {bio} |
pbdagcon | 3 | {bio} |
- perm | 3 | {cloud,bio} |
+ perm | 3 | {bio,cloud} |
phast | 3 | {bio} |
- prime-phylo | 3 | {bio,cloud} |
+ prime-phylo | 3 | {cloud,bio} |
proalign | 3 | {bio-phylogeny,bio} |
quorum | 3 | {bio} |
- rtax | 3 | {bio,cloud} |
+ rtax | 3 | {cloud,bio} |
runcircos-gui | 3 | {bio} |
scrm | 3 | {bio} |
sga | 3 | {bio} |
@@ -117,9 +116,9 @@ Last-Update: Thu, 03 Dec 2020 01:42:04 +0000
sprai | 3 | {bio} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
- biosig | 2 | {physics,imaging-dev} |
- blasr | 2 | {bio,bio-ngs} |
- busco | 2 | {covid-19,bio} |
+ biomaj3-daemon | 2 | {bio} |
+ biosig | 2 | {imaging-dev,physics} |
+ blasr | 2 | {bio-ngs,bio} |
canu | 2 | {bio} |
emboss-explorer | 2 | {bio} |
estscan | 2 | {bio} |
@@ -128,20 +127,19 @@ Last-Update: Thu, 03 Dec 2020 01:42:04 +0000
libbio-mage-utils-perl | 2 | {bio-dev} |
libctapimkt | 2 | {practice} |
libmuscle | 2 | {bio-dev} |
- oscar | 2 | {data,tools,practice} |
+ oscar | 2 | {tools,practice,data} |
papyrus | 2 | {imaging-dev} |
pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
samblaster | 2 | {covid-19,bio} |
- samtools-legacy | 2 | {bio-dev} |
seqan | 2 | {bio-dev} |
simpleitk | 2 | {imaging-dev} |
soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
yaha | 2 | {bio} |
- acedb | 1 | {bio,cloud} |
+ acedb | 1 | {cloud,bio} |
bambamc | 1 | {bio-dev} |
- bbmap | 1 | {covid-19,bio} |
+ bbmap | 1 | {bio,covid-19} |
biosig | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
cat-bat | 1 | {covid-19,bio} |
@@ -150,8 +148,8 @@ Last-Update: Thu, 03 Dec 2020 01:42:04 +0000
emmax | 1 | {bio} |
gatb-core | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
- htscodecs | 1 | {bio-dev,covid-19} |
- intake | 1 | {bio,bio-dev} |
+ htscodecs | 1 | {covid-19,bio-dev} |
+ intake | 1 | {bio-dev,bio} |
libbpp-core | 1 | {bio-dev} |
libbpp-phyl | 1 | {bio-dev} |
libbpp-phyl-omics | 1 | {bio-dev} |
@@ -170,30 +168,29 @@ Last-Update: Thu, 03 Dec 2020 01:42:04 +0000
libseqlib | 1 | {bio-dev} |
libstatgen | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- nanosv | 1 | {covid-19,bio} |
ncbi-vdb | 1 | {bio-dev} |
opencfu | 1 | {laboratory} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
pbseqlib | 1 | {bio-dev} |
- plasmidid | 1 | {bio,covid-19} |
+ plasmidid | 1 | {covid-19,bio} |
plasmidseeker | 1 | {bio} |
+ samtools-legacy | 1 | {bio-dev} |
segemehl | 1 | {bio} |
seq-gen | 1 | {bio} |
sift | 1 | {bio} |
srf | 1 | {bio-dev} |
- thesias | 1 | {covid-19,bio} |
+ thesias | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
tvc | 1 | {bio} |
- yanagiba | 1 | {covid-19,bio} |
atropos | 0 | {bio} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
- bustools | 0 | {covid-19,bio} |
+ bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
cufflinks | 0 | {bio,cloud} |
- dextractor | 0 | {covid-19,bio} |
+ dextractor | 0 | {bio,covid-19} |
fis-gtm | 0 | {his} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
@@ -208,36 +205,38 @@ Last-Update: Thu, 03 Dec 2020 01:42:04 +0000
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
+ milib | 0 | {bio-dev,covid-19} |
+ nanosv | 0 | {covid-19,bio} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
- pigx-rnaseq | 0 | {bio,covid-19} |
+ pigx-rnaseq | 0 | {covid-19,bio} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
- pplacer | 0 | {bio-phylogeny,bio,covid-19} |
+ pplacer | 0 | {covid-19,bio,bio-phylogeny} |
python-seqcluster | 0 | {bio} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
q2templates | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
- shovill | 0 | {bio,covid-19} |
+ shovill | 0 | {covid-19,bio} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
spaln | 0 | {bio,covid-19} |
- tophat-recondition | 0 | {covid-19,bio} |
+ tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
- vienna-rna | 0 | {bio,covid-19} |
+ vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
+ yanagiba | 0 | {covid-19,bio} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
-(267 rows)
+(266 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d9199480971a1a164c3c8e3b2e8d99300108495f
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d9199480971a1a164c3c8e3b2e8d99300108495f
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