[med-svn] [Git][med-team/pftools][master] 3 commits: There is no need to exclude anything any more

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / pftools


Commits:
cc312d1b by Andreas Tille at 2020-12-03T15:15:42+01:00
There is no need to exclude anything any more

- - - - -
91e9e35a by Andreas Tille at 2020-12-03T15:17:00+01:00
New upstream version 3.2.6
- - - - -
01164909 by Andreas Tille at 2020-12-03T15:20:38+01:00
Update upstream source from tag 'upstream/3.2.6'

Update to upstream version '3.2.6'
with Debian dir 426d6f4cc4bc5f103d14013cc272ad8c643be07d
- - - - -


4 changed files:

- + INSTALL
- debian/copyright
- − debian/missing-sources/get
- debian/missing-sources/config.h.cmake → src/C/config.h.cmake


Changes:

=====================================
INSTALL
=====================================
@@ -0,0 +1,70 @@
+REQUIREMENTS
+------------
+
+- 64bit processors
+- cmake >= 3.7
+- gcc   >= 4.6
+- gfortran (or g77 or f77)  for release 2.3 source code
+- perl  >= 5.5.3            for ps_scan.pl
+
+Optional:
+- pcre*
+- GD*
+- libpng
+- libjpeg
+- zlib
+- libharu* (hpdf)
+
+* copy of the source code is provided and could be used during build, if requested.
+
+INSTALLATION
+------------
+
+In order to compile the programs, type:
+
+BUILD:
+   git clone https://github.com/sib-swiss/pftools3.git
+   cd pftools3
+   mkdir build
+   cd build/
+   cmake ..
+
+   OPTIONS:
+   - Build static binaries:
+        cmake -DSTANDALONE=ON ..
+
+   - Build a version using 32bits integers to represent profile matrix values
+     instead of default 16bits (less problems with low/negative cutoff values,
+     might be slower & use more memory):
+        cmake -DUSE_32BIT_INTEGER=ON ..
+
+   - Change installation prefix:
+        cmake -DCMAKE_INSTALL_PREFIX:PATH=<INSTALL PATH> ..
+
+   - Compile C only code (version 3 only):
+        cmake -DC_ONLY=ON ..
+
+   - Compile with graphical support for pfcalibrateV3 (highly optional):
+        cmake -DUSE_GRAPHICS=ON -DUSE_PDF=ON ..
+
+   - Compile without regular expression support:
+        cmake -DUSE_PCRE=OFF ..
+
+   ...
+
+   example:
+        cmake -DC_ONLY=ON -DUSE_32BIT_INTEGER=ON -DUSE_PCRE=OFF ..
+
+
+COMPILE:
+   make
+
+This will create the binaries. To install the
+binaries and the corresponding manual pages type:
+
+INSTALL (see above to change install path):
+   make install
+
+CHECK/TEST:
+   make test
+


=====================================
debian/copyright
=====================================
@@ -3,21 +3,6 @@ Upstream-Contact: pftools at isb-sib.ch
                   prosite at expasy.org (via request tracker)
                   Alan.Bridge at sib.swiss, Christian.Sigrist at sib.swiss, Gregoire.Rossier at sib.swiss
 Source: https://github.com/sib-swiss/pftools3/releases
-Files-Excluded: */a.out
-                */pfdunp
-                *.deps
-                INSTALL
-                */Makefile
-                */Makefile.in
-                aclocal.m4
-                compile
-                config.*
-                configure
-                depcomp
-                install-sh
-                missing
-                */config.h*
-                */stamp-h1
 
 Files: *
 Copyright: 2002-2011 Alan Bridge, Christian Sigrist, Gregoire Rossier


=====================================
debian/missing-sources/get deleted
=====================================
@@ -1,5 +0,0 @@
-#!/bin/sh
-# Upstream just forgot to include this file in the downloadable tarball
-# see https://github.com/sib-swiss/pftools3/issues/17
-wget https://raw.githubusercontent.com/sib-swiss/pftools3/master/src/C/config.h.cmake
-


=====================================
debian/missing-sources/config.h.cmake → src/C/config.h.cmake
=====================================



View it on GitLab: https://salsa.debian.org/med-team/pftools/-/compare/faa7014383b252e2bf8cb20ce3020433e5d2acde...011649097f21220233797bbcbfe74f28cb49d3bf

-- 
View it on GitLab: https://salsa.debian.org/med-team/pftools/-/compare/faa7014383b252e2bf8cb20ce3020433e5d2acde...011649097f21220233797bbcbfe74f28cb49d3bf
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20201203/c4f087c1/attachment-0001.html>