Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
bba7bc34 by Andreas Tille at 2020-12-04T13:45:38+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,89 +1,93 @@
-Last-Update: Fri, 04 Dec 2020 01:42:04 +0000
+Last-Update: Fri, 04 Dec 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 184 | {covid-19,imaging} |
- orthanc | 97 | {imaging,practice,covid-19} |
- orthanc-wsi | 47 | {laboratory,his,oncology,imaging,practice,covid-19} |
+ dcmtk | 182 | {imaging,covid-19} |
+ orthanc | 96 | {imaging,covid-19,practice} |
+ orthanc-wsi | 47 | {imaging,practice,his,covid-19,laboratory,oncology} |
gdcm | 36 | {imaging-dev} |
htsjdk | 30 | {bio-dev} |
- dicom3tools | 22 | {imaging} |
- dcm2niix | 21 | {imaging} |
- gdcm | 21 | {imaging,covid-19} |
- dicomscope | 19 | {imaging} |
- ngs-sdk | 19 | {bio-dev} |
- gnumed-server | 17 | {covid-19,practice} |
- adun.app | 15 | {bio} |
- nifticlib | 14 | {imaging} |
+ dicom3tools | 23 | {imaging} |
+ dicomscope | 21 | {imaging} |
+ gdcm | 21 | {covid-19,imaging} |
+ dcm2niix | 20 | {imaging} |
+ ngs-sdk | 18 | {bio-dev} |
+ adun.app | 16 | {bio} |
+ gnumed-server | 16 | {covid-19,practice} |
+ nifticlib | 15 | {imaging} |
gdcm | 13 | {imaging-dev} |
invesalius | 13 | {imaging} |
minc-tools | 13 | {imaging} |
- ngs-sdk | 12 | {bio-dev} |
ngs-sdk | 11 | {bio-dev} |
nifticlib | 11 | {imaging-dev} |
- pixelmed | 11 | {imaging} |
- openslide | 10 | {imaging} |
- king | 9 | {imaging,typesetting} |
- orthanc-webviewer | 9 | {imaging} |
+ openslide | 11 | {imaging} |
+ ngs-sdk | 10 | {bio-dev} |
+ pixelmed | 10 | {imaging} |
+ biosig | 9 | {physics,imaging} |
+ librg-utils-perl | 9 | {bio} |
+ melting | 9 | {bio,cloud} |
plastimatch | 9 | {imaging} |
- biosig | 8 | {imaging,physics} |
+ ea-utils | 8 | {bio} |
insighttoolkit4 | 8 | {imaging-dev} |
- librg-utils-perl | 8 | {bio} |
- melting | 8 | {bio,cloud} |
+ king | 8 | {imaging,typesetting} |
+ orthanc-webviewer | 8 | {imaging} |
+ seqsero | 8 | {bio} |
vtk-dicom | 8 | {imaging} |
- ea-utils | 7 | {bio} |
+ bamkit | 7 | {bio,covid-19} |
+ fastlink | 7 | {cloud,bio} |
jebl2 | 7 | {bio-dev} |
- seqsero | 7 | {bio} |
- treeview | 7 | {bio-phylogeny,bio} |
- bamkit | 6 | {covid-19,bio} |
+ rambo-k | 7 | {bio} |
+ salmon | 7 | {bio,covid-19} |
+ staden | 7 | {bio} |
+ treeview | 7 | {bio,bio-phylogeny} |
+ arden | 6 | {cloud,bio} |
bart-view | 6 | {imaging} |
biojava-live | 6 | {bio-dev} |
- fastlink | 6 | {cloud,bio} |
- multiqc | 6 | {covid-19,bio} |
+ dicompyler | 6 | {oncology} |
+ mipe | 6 | {cloud,bio} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
- rambo-k | 6 | {bio} |
- arden | 5 | {bio,cloud} |
- dicompyler | 5 | {oncology} |
+ paraclu | 6 | {bio,cloud} |
+ pymia | 6 | {imaging-dev} |
+ anfo | 5 | {cloud,bio} |
elastix | 5 | {imaging} |
+ embassy-domainatrix | 5 | {bio,cloud} |
+ embassy-domalign | 5 | {bio,cloud} |
getdata | 5 | {bio} |
+ ipig | 5 | {bio} |
libdivsufsort | 5 | {bio-dev} |
+ libncl | 5 | {bio} |
libpal-java | 5 | {bio-dev} |
- mipe | 5 | {bio,cloud} |
+ multiqc | 5 | {bio,covid-19} |
obitools | 5 | {bio} |
orthanc-mysql | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
- paraclu | 5 | {cloud,bio} |
- pymia | 5 | {imaging-dev} |
- salmon | 5 | {bio,covid-19} |
+ phyutility | 5 | {bio,cloud} |
+ saint | 5 | {bio} |
+ sibsim4 | 5 | {bio,cloud} |
spread-phy | 5 | {bio-phylogeny,bio} |
stacks | 5 | {bio} |
- staden | 5 | {bio} |
- anfo | 4 | {bio,cloud} |
- beast-mcmc | 4 | {bio-phylogeny,bio} |
- bio-tradis | 4 | {bio,bio-dev} |
+ zalign | 5 | {cloud,bio} |
+ beast-mcmc | 4 | {bio,bio-phylogeny} |
+ bio-tradis | 4 | {bio-dev,bio} |
ecopcr | 4 | {bio} |
- embassy-domainatrix | 4 | {cloud,bio} |
- embassy-domalign | 4 | {bio,cloud} |
- ipig | 4 | {bio} |
- jmodeltest | 4 | {bio-phylogeny,bio} |
+ embassy-domsearch | 4 | {bio,cloud} |
+ jmodeltest | 4 | {bio,bio-phylogeny} |
libminc | 4 | {imaging-dev} |
- libncl | 4 | {bio} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
- libsbml | 4 | {bio-dev} |
metaphlan2 | 4 | {bio} |
mrs | 4 | {bio} |
+ perm | 4 | {bio,cloud} |
phybin | 4 | {bio} |
- phyutility | 4 | {cloud,bio} |
piler | 4 | {bio} |
placnet | 4 | {bio} |
- prottest | 4 | {bio-phylogeny,bio} |
+ prime-phylo | 4 | {cloud,bio} |
+ proalign | 4 | {bio,bio-phylogeny} |
+ prottest | 4 | {bio,bio-phylogeny} |
rdp-alignment | 4 | {bio} |
rdp-classifier | 4 | {bio} |
- saint | 4 | {bio} |
- sibsim4 | 4 | {bio,cloud} |
+ rtax | 4 | {bio,cloud} |
spaced | 4 | {bio} |
tracetuner | 4 | {bio} |
- zalign | 4 | {cloud,bio} |
assemblytics | 3 | {bio} |
biomaj3-cli | 3 | {cloud} |
bitseq | 3 | {bio} |
@@ -92,33 +96,29 @@ Last-Update: Fri, 04 Dec 2020 01:42:04 +0000
clonalframeml | 3 | {bio,covid-19} |
clonalorigin | 3 | {bio} |
dindel | 3 | {bio} |
- embassy-domsearch | 3 | {cloud,bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
ghmm | 3 | {bio} |
lagan | 3 | {bio} |
lamarc | 3 | {bio} |
+ libsbml | 3 | {bio-dev} |
logol | 3 | {bio} |
mauve-aligner | 3 | {bio} |
mhap | 3 | {bio,bio-ngs} |
microbegps | 3 | {bio} |
pbdagcon | 3 | {bio} |
- perm | 3 | {bio,cloud} |
phast | 3 | {bio} |
- prime-phylo | 3 | {cloud,bio} |
- proalign | 3 | {bio-phylogeny,bio} |
quorum | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
runcircos-gui | 3 | {bio} |
- scrm | 3 | {bio} |
sga | 3 | {bio} |
sight | 3 | {imaging} |
sprai | 3 | {bio} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
+ acedb | 2 | {bio,cloud} |
biomaj3-daemon | 2 | {bio} |
biosig | 2 | {imaging-dev,physics} |
- blasr | 2 | {bio-ngs,bio} |
+ blasr | 2 | {bio,bio-ngs} |
canu | 2 | {bio} |
emboss-explorer | 2 | {bio} |
estscan | 2 | {bio} |
@@ -127,8 +127,7 @@ Last-Update: Fri, 04 Dec 2020 01:42:04 +0000
libbio-mage-utils-perl | 2 | {bio-dev} |
libctapimkt | 2 | {practice} |
libmuscle | 2 | {bio-dev} |
- oscar | 2 | {tools,practice,data} |
- papyrus | 2 | {imaging-dev} |
+ oscar | 2 | {practice,data,tools} |
pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
samblaster | 2 | {covid-19,bio} |
@@ -137,18 +136,16 @@ Last-Update: Fri, 04 Dec 2020 01:42:04 +0000
soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
yaha | 2 | {bio} |
- acedb | 1 | {cloud,bio} |
bambamc | 1 | {bio-dev} |
- bbmap | 1 | {bio,covid-19} |
+ bbmap | 1 | {covid-19,bio} |
biosig | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
- cat-bat | 1 | {covid-19,bio} |
+ cat-bat | 1 | {bio,covid-19} |
ctn | 1 | {imaging-dev} |
- delly | 1 | {bio,covid-19} |
- emmax | 1 | {bio} |
+ delly | 1 | {covid-19,bio} |
gatb-core | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
- htscodecs | 1 | {covid-19,bio-dev} |
+ htscodecs | 1 | {bio-dev,covid-19} |
intake | 1 | {bio-dev,bio} |
libbpp-core | 1 | {bio-dev} |
libbpp-phyl | 1 | {bio-dev} |
@@ -172,6 +169,7 @@ Last-Update: Fri, 04 Dec 2020 01:42:04 +0000
opencfu | 1 | {laboratory} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
+ papyrus | 1 | {imaging-dev} |
pbseqlib | 1 | {bio-dev} |
plasmidid | 1 | {covid-19,bio} |
plasmidseeker | 1 | {bio} |
@@ -187,16 +185,17 @@ Last-Update: Fri, 04 Dec 2020 01:42:04 +0000
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
- bustools | 0 | {bio,covid-19} |
+ bustools | 0 | {covid-19,bio} |
camp | 0 | {imaging-dev} |
- cufflinks | 0 | {bio,cloud} |
+ cufflinks | 0 | {cloud,bio} |
dextractor | 0 | {bio,covid-19} |
+ emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
libmialm | 0 | {imaging-dev} |
@@ -218,7 +217,7 @@ Last-Update: Fri, 04 Dec 2020 01:42:04 +0000
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
- q2templates | 0 | {bio} |
+ q2templates | 0 | {bio,bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
shovill | 0 | {covid-19,bio} |
@@ -226,17 +225,17 @@ Last-Update: Fri, 04 Dec 2020 01:42:04 +0000
simrisc | 0 | {oncology} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {covid-19,bio} |
- spaln | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {bio,covid-19} |
+ spaln | 0 | {covid-19,bio} |
tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- varscan | 0 | {covid-19,bio} |
- vienna-rna | 0 | {covid-19,bio} |
+ varscan | 0 | {bio,covid-19} |
+ vienna-rna | 0 | {bio,covid-19} |
vtk-dicom | 0 | {imaging-dev} |
- yanagiba | 0 | {covid-19,bio} |
+ yanagiba | 0 | {bio,covid-19} |
mssstest | -1 | {tools} |
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
-(266 rows)
+(265 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/bba7bc3410b8286f799a9d3ea95f23029f148166
--
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