[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Sat Dec 5 13:45:40 GMT 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
0321c896 by Andreas Tille at 2020-12-05T13:45:36+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,93 +1,87 @@
-Last-Update: Sat, 05 Dec 2020 01:42:03 +0000
+Last-Update: Sat, 05 Dec 2020 13:42:03 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    182 | {imaging,covid-19}                                  | 
- orthanc                       |     96 | {imaging,covid-19,practice}                         | 
- orthanc-wsi                   |     47 | {imaging,practice,his,covid-19,laboratory,oncology} | 
+ dcmtk                         |    183 | {imaging,covid-19}                                  | 
+ orthanc                       |     97 | {imaging,covid-19,practice}                         | 
+ orthanc-wsi                   |     49 | {imaging,practice,his,covid-19,laboratory,oncology} | 
  gdcm                          |     36 | {imaging-dev}                                       | 
- htsjdk                        |     30 | {bio-dev}                                           | 
- dicom3tools                   |     23 | {imaging}                                           | 
- dicomscope                    |     21 | {imaging}                                           | 
+ htsjdk                        |     29 | {bio-dev}                                           | 
+ dicom3tools                   |     22 | {imaging}                                           | 
  gdcm                          |     21 | {covid-19,imaging}                                  | 
  dcm2niix                      |     20 | {imaging}                                           | 
- ngs-sdk                       |     18 | {bio-dev}                                           | 
+ dicomscope                    |     20 | {imaging}                                           | 
+ ngs-sdk                       |     17 | {bio-dev}                                           | 
  adun.app                      |     16 | {bio}                                               | 
  gnumed-server                 |     16 | {covid-19,practice}                                 | 
  nifticlib                     |     15 | {imaging}                                           | 
  gdcm                          |     13 | {imaging-dev}                                       | 
  invesalius                    |     13 | {imaging}                                           | 
  minc-tools                    |     13 | {imaging}                                           | 
- ngs-sdk                       |     11 | {bio-dev}                                           | 
  nifticlib                     |     11 | {imaging-dev}                                       | 
- openslide                     |     11 | {imaging}                                           | 
  ngs-sdk                       |     10 | {bio-dev}                                           | 
+ openslide                     |     10 | {imaging}                                           | 
  pixelmed                      |     10 | {imaging}                                           | 
- biosig                        |      9 | {physics,imaging}                                   | 
- librg-utils-perl              |      9 | {bio}                                               | 
- melting                       |      9 | {bio,cloud}                                         | 
+ orthanc-webviewer             |      9 | {imaging}                                           | 
  plastimatch                   |      9 | {imaging}                                           | 
+ biosig                        |      8 | {physics,imaging}                                   | 
  ea-utils                      |      8 | {bio}                                               | 
  insighttoolkit4               |      8 | {imaging-dev}                                       | 
  king                          |      8 | {imaging,typesetting}                               | 
- orthanc-webviewer             |      8 | {imaging}                                           | 
+ librg-utils-perl              |      8 | {bio}                                               | 
+ melting                       |      8 | {bio,cloud}                                         | 
  seqsero                       |      8 | {bio}                                               | 
  vtk-dicom                     |      8 | {imaging}                                           | 
  bamkit                        |      7 | {bio,covid-19}                                      | 
- fastlink                      |      7 | {cloud,bio}                                         | 
  jebl2                         |      7 | {bio-dev}                                           | 
+ orthanc-dicomweb              |      7 | {covid-19,imaging}                                  | 
  rambo-k                       |      7 | {bio}                                               | 
  salmon                        |      7 | {bio,covid-19}                                      | 
- staden                        |      7 | {bio}                                               | 
  treeview                      |      7 | {bio,bio-phylogeny}                                 | 
- arden                         |      6 | {cloud,bio}                                         | 
  bart-view                     |      6 | {imaging}                                           | 
  biojava-live                  |      6 | {bio-dev}                                           | 
- dicompyler                    |      6 | {oncology}                                          | 
- mipe                          |      6 | {cloud,bio}                                         | 
- orthanc-dicomweb              |      6 | {covid-19,imaging}                                  | 
- paraclu                       |      6 | {bio,cloud}                                         | 
+ fastlink                      |      6 | {cloud,bio}                                         | 
+ orthanc-mysql                 |      6 | {imaging}                                           | 
+ orthanc-postgresql            |      6 | {imaging}                                           | 
  pymia                         |      6 | {imaging-dev}                                       | 
- anfo                          |      5 | {cloud,bio}                                         | 
- elastix                       |      5 | {imaging}                                           | 
- embassy-domainatrix           |      5 | {bio,cloud}                                         | 
- embassy-domalign              |      5 | {bio,cloud}                                         | 
+ staden                        |      6 | {bio}                                               | 
+ arden                         |      5 | {cloud,bio}                                         | 
+ dicompyler                    |      5 | {oncology}                                          | 
  getdata                       |      5 | {bio}                                               | 
- ipig                          |      5 | {bio}                                               | 
  libdivsufsort                 |      5 | {bio-dev}                                           | 
  libncl                        |      5 | {bio}                                               | 
  libpal-java                   |      5 | {bio-dev}                                           | 
+ mipe                          |      5 | {cloud,bio}                                         | 
  multiqc                       |      5 | {bio,covid-19}                                      | 
  obitools                      |      5 | {bio}                                               | 
- orthanc-mysql                 |      5 | {imaging}                                           | 
- orthanc-postgresql            |      5 | {imaging}                                           | 
- phyutility                    |      5 | {bio,cloud}                                         | 
- saint                         |      5 | {bio}                                               | 
- sibsim4                       |      5 | {bio,cloud}                                         | 
+ paraclu                       |      5 | {bio,cloud}                                         | 
  spread-phy                    |      5 | {bio-phylogeny,bio}                                 | 
  stacks                        |      5 | {bio}                                               | 
- zalign                        |      5 | {cloud,bio}                                         | 
+ anfo                          |      4 | {cloud,bio}                                         | 
  beast-mcmc                    |      4 | {bio,bio-phylogeny}                                 | 
  bio-tradis                    |      4 | {bio-dev,bio}                                       | 
  ecopcr                        |      4 | {bio}                                               | 
- embassy-domsearch             |      4 | {bio,cloud}                                         | 
+ elastix                       |      4 | {imaging}                                           | 
+ embassy-domainatrix           |      4 | {bio,cloud}                                         | 
+ embassy-domalign              |      4 | {bio,cloud}                                         | 
+ ipig                          |      4 | {bio}                                               | 
  jmodeltest                    |      4 | {bio,bio-phylogeny}                                 | 
  libminc                       |      4 | {imaging-dev}                                       | 
  librdp-taxonomy-tree-java     |      4 | {bio-dev}                                           | 
  metaphlan2                    |      4 | {bio}                                               | 
  mrs                           |      4 | {bio}                                               | 
- perm                          |      4 | {bio,cloud}                                         | 
  phybin                        |      4 | {bio}                                               | 
+ phyutility                    |      4 | {bio,cloud}                                         | 
  piler                         |      4 | {bio}                                               | 
  placnet                       |      4 | {bio}                                               | 
- prime-phylo                   |      4 | {cloud,bio}                                         | 
- proalign                      |      4 | {bio,bio-phylogeny}                                 | 
  prottest                      |      4 | {bio,bio-phylogeny}                                 | 
  rdp-alignment                 |      4 | {bio}                                               | 
  rdp-classifier                |      4 | {bio}                                               | 
- rtax                          |      4 | {bio,cloud}                                         | 
+ saint                         |      4 | {bio}                                               | 
+ sibsim4                       |      4 | {bio,cloud}                                         | 
  spaced                        |      4 | {bio}                                               | 
  tracetuner                    |      4 | {bio}                                               | 
+ zalign                        |      4 | {cloud,bio}                                         | 
  assemblytics                  |      3 | {bio}                                               | 
  biomaj3-cli                   |      3 | {cloud}                                             | 
  bitseq                        |      3 | {bio}                                               | 
@@ -96,6 +90,7 @@ Last-Update: Sat, 05 Dec 2020 01:42:03 +0000
  clonalframeml                 |      3 | {bio,covid-19}                                      | 
  clonalorigin                  |      3 | {bio}                                               | 
  dindel                        |      3 | {bio}                                               | 
+ embassy-domsearch             |      3 | {bio,cloud}                                         | 
  fastml                        |      3 | {bio}                                               | 
  fsm-lite                      |      3 | {bio}                                               | 
  ghmm                          |      3 | {bio}                                               | 
@@ -107,15 +102,18 @@ Last-Update: Sat, 05 Dec 2020 01:42:03 +0000
  mhap                          |      3 | {bio,bio-ngs}                                       | 
  microbegps                    |      3 | {bio}                                               | 
  pbdagcon                      |      3 | {bio}                                               | 
+ perm                          |      3 | {bio,cloud}                                         | 
  phast                         |      3 | {bio}                                               | 
+ prime-phylo                   |      3 | {cloud,bio}                                         | 
+ proalign                      |      3 | {bio,bio-phylogeny}                                 | 
  quorum                        |      3 | {bio}                                               | 
+ rtax                          |      3 | {bio,cloud}                                         | 
  runcircos-gui                 |      3 | {bio}                                               | 
  sga                           |      3 | {bio}                                               | 
  sight                         |      3 | {imaging}                                           | 
  sprai                         |      3 | {bio}                                               | 
  suitename                     |      3 | {bio}                                               | 
  surankco                      |      3 | {bio}                                               | 
- acedb                         |      2 | {bio,cloud}                                         | 
  biomaj3-daemon                |      2 | {bio}                                               | 
  biosig                        |      2 | {imaging-dev,physics}                               | 
  blasr                         |      2 | {bio,bio-ngs}                                       | 
@@ -136,6 +134,7 @@ Last-Update: Sat, 05 Dec 2020 01:42:03 +0000
  soapaligner                   |      2 | {bio}                                               | 
  soapsnp                       |      2 | {bio}                                               | 
  yaha                          |      2 | {bio}                                               | 
+ acedb                         |      1 | {bio,cloud}                                         | 
  bambamc                       |      1 | {bio-dev}                                           | 
  bbmap                         |      1 | {covid-19,bio}                                      | 
  biosig                        |      1 | {physics,imaging-dev}                               | 
@@ -143,8 +142,8 @@ Last-Update: Sat, 05 Dec 2020 01:42:03 +0000
  cat-bat                       |      1 | {bio,covid-19}                                      | 
  ctn                           |      1 | {imaging-dev}                                       | 
  delly                         |      1 | {covid-19,bio}                                      | 
- gatb-core                     |      1 | {bio}                                               | 
  gatb-core                     |      1 | {bio-dev}                                           | 
+ gatb-core                     |      1 | {bio}                                               | 
  htscodecs                     |      1 | {bio-dev,covid-19}                                  | 
  intake                        |      1 | {bio-dev,bio}                                       | 
  libbpp-core                   |      1 | {bio-dev}                                           | 
@@ -169,7 +168,6 @@ Last-Update: Sat, 05 Dec 2020 01:42:03 +0000
  opencfu                       |      1 | {laboratory}                                        | 
  openslide                     |      1 | {imaging-dev}                                       | 
  opensurgsim                   |      1 | {imaging-dev}                                       | 
- papyrus                       |      1 | {imaging-dev}                                       | 
  pbseqlib                      |      1 | {bio-dev}                                           | 
  plasmidid                     |      1 | {covid-19,bio}                                      | 
  plasmidseeker                 |      1 | {bio}                                               | 
@@ -208,6 +206,7 @@ Last-Update: Sat, 05 Dec 2020 01:42:03 +0000
  nanosv                        |      0 | {covid-19,bio}                                      | 
  nifticlib                     |      0 | {imaging-dev}                                       | 
  orthanc-imagej                |      0 | {imaging}                                           | 
+ papyrus                       |      0 | {imaging-dev}                                       | 
  parallel-fastq-dump           |      0 | {covid-19}                                          | 
  pbcopper                      |      0 | {bio-dev}                                           | 
  pbseqlib                      |      0 | {bio-dev}                                           | 
@@ -215,8 +214,8 @@ Last-Update: Sat, 05 Dec 2020 01:42:03 +0000
  pilercr                       |      0 | {bio}                                               | 
  pique                         |      0 | {bio}                                               | 
  pplacer                       |      0 | {covid-19,bio,bio-phylogeny}                        | 
- python-seqcluster             |      0 | {bio}                                               | 
  python-seqcluster             |      0 | {covid-19,bio-dev}                                  | 
+ python-seqcluster             |      0 | {bio}                                               | 
  q2templates                   |      0 | {bio,bio-dev}                                       | 
  sambamba                      |      0 | {bio}                                               | 
  sbmltoolbox                   |      0 | {bio-dev}                                           | 
@@ -237,5 +236,5 @@ Last-Update: Sat, 05 Dec 2020 01:42:03 +0000
  orthanc-python                |     -1 | {covid-19}                                          | 
  sight                         |     -1 | {imaging-dev}                                       | 
  svim                          |     -1 | {bio}                                               | 
-(265 rows)
+(264 rows)
 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/0321c8968c26c9d820ffdd08c6660673fe8cf5ca

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/0321c8968c26c9d820ffdd08c6660673fe8cf5ca
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