Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
e242ea51 by Andreas Tille at 2020-12-06T13:45:44+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,151 +1,151 @@
-Last-Update: Sun, 06 Dec 2020 01:42:04 +0000
+Last-Update: Sun, 06 Dec 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 183 | {imaging,covid-19} |
- orthanc | 97 | {imaging,covid-19,practice} |
- orthanc-wsi | 49 | {imaging,practice,his,covid-19,laboratory,oncology} |
+ dcmtk | 188 | {covid-19,imaging} |
+ orthanc | 100 | {covid-19,imaging,practice} |
+ orthanc-wsi | 50 | {his,imaging,practice,oncology,laboratory,covid-19} |
gdcm | 36 | {imaging-dev} |
- htsjdk | 29 | {bio-dev} |
- dicom3tools | 22 | {imaging} |
+ htsjdk | 30 | {bio-dev} |
+ dicom3tools | 23 | {imaging} |
gdcm | 21 | {covid-19,imaging} |
dcm2niix | 20 | {imaging} |
- dicomscope | 20 | {imaging} |
+ dicomscope | 19 | {imaging} |
+ adun.app | 17 | {bio} |
ngs-sdk | 17 | {bio-dev} |
- adun.app | 16 | {bio} |
- gnumed-server | 16 | {covid-19,practice} |
- nifticlib | 15 | {imaging} |
- gdcm | 13 | {imaging-dev} |
- invesalius | 13 | {imaging} |
- minc-tools | 13 | {imaging} |
- nifticlib | 11 | {imaging-dev} |
+ gnumed-server | 16 | {practice,covid-19} |
+ nifticlib | 16 | {imaging} |
+ gdcm | 14 | {imaging-dev} |
+ invesalius | 14 | {imaging} |
+ minc-tools | 14 | {imaging} |
+ nifticlib | 12 | {imaging-dev} |
ngs-sdk | 10 | {bio-dev} |
openslide | 10 | {imaging} |
pixelmed | 10 | {imaging} |
+ biosig | 9 | {imaging,physics} |
+ ea-utils | 9 | {bio} |
+ insighttoolkit4 | 9 | {imaging-dev} |
+ librg-utils-perl | 9 | {bio} |
orthanc-webviewer | 9 | {imaging} |
plastimatch | 9 | {imaging} |
- biosig | 8 | {physics,imaging} |
- ea-utils | 8 | {bio} |
- insighttoolkit4 | 8 | {imaging-dev} |
- king | 8 | {imaging,typesetting} |
- librg-utils-perl | 8 | {bio} |
+ jebl2 | 8 | {bio-dev} |
+ king | 8 | {typesetting,imaging} |
melting | 8 | {bio,cloud} |
+ salmon | 8 | {covid-19,bio} |
seqsero | 8 | {bio} |
vtk-dicom | 8 | {imaging} |
- bamkit | 7 | {bio,covid-19} |
- jebl2 | 7 | {bio-dev} |
- orthanc-dicomweb | 7 | {covid-19,imaging} |
- rambo-k | 7 | {bio} |
- salmon | 7 | {bio,covid-19} |
- treeview | 7 | {bio,bio-phylogeny} |
+ biojava-live | 7 | {bio-dev} |
+ fastlink | 7 | {cloud,bio} |
+ orthanc-dicomweb | 7 | {imaging,covid-19} |
+ staden | 7 | {bio} |
+ treeview | 7 | {bio-phylogeny,bio} |
+ arden | 6 | {bio,cloud} |
+ bamkit | 6 | {bio,covid-19} |
bart-view | 6 | {imaging} |
- biojava-live | 6 | {bio-dev} |
- fastlink | 6 | {cloud,bio} |
+ dicompyler | 6 | {oncology} |
+ libncl | 6 | {bio} |
+ libpal-java | 6 | {bio-dev} |
orthanc-mysql | 6 | {imaging} |
orthanc-postgresql | 6 | {imaging} |
pymia | 6 | {imaging-dev} |
- staden | 6 | {bio} |
- arden | 5 | {cloud,bio} |
- dicompyler | 5 | {oncology} |
+ rambo-k | 6 | {bio} |
+ anfo | 5 | {bio,cloud} |
+ beast-mcmc | 5 | {bio,bio-phylogeny} |
+ bio-tradis | 5 | {bio,bio-dev} |
+ ecopcr | 5 | {bio} |
+ elastix | 5 | {imaging} |
+ embassy-domainatrix | 5 | {bio,cloud} |
+ embassy-domalign | 5 | {bio,cloud} |
getdata | 5 | {bio} |
+ ipig | 5 | {bio} |
+ jmodeltest | 5 | {bio,bio-phylogeny} |
libdivsufsort | 5 | {bio-dev} |
- libncl | 5 | {bio} |
- libpal-java | 5 | {bio-dev} |
- mipe | 5 | {cloud,bio} |
+ metaphlan2 | 5 | {bio} |
+ mipe | 5 | {bio,cloud} |
multiqc | 5 | {bio,covid-19} |
obitools | 5 | {bio} |
- paraclu | 5 | {bio,cloud} |
- spread-phy | 5 | {bio-phylogeny,bio} |
- stacks | 5 | {bio} |
- anfo | 4 | {cloud,bio} |
- beast-mcmc | 4 | {bio,bio-phylogeny} |
- bio-tradis | 4 | {bio-dev,bio} |
- ecopcr | 4 | {bio} |
- elastix | 4 | {imaging} |
- embassy-domainatrix | 4 | {bio,cloud} |
- embassy-domalign | 4 | {bio,cloud} |
- ipig | 4 | {bio} |
- jmodeltest | 4 | {bio,bio-phylogeny} |
+ paraclu | 5 | {cloud,bio} |
+ phybin | 5 | {bio} |
+ placnet | 5 | {bio} |
+ prottest | 5 | {bio,bio-phylogeny} |
+ rdp-alignment | 5 | {bio} |
+ runcircos-gui | 5 | {bio} |
+ saint | 5 | {bio} |
+ spaced | 5 | {bio} |
+ spread-phy | 5 | {bio,bio-phylogeny} |
+ tracetuner | 5 | {bio} |
+ zalign | 5 | {cloud,bio} |
+ assemblytics | 4 | {bio} |
+ biomaj3-cli | 4 | {cloud} |
+ bitseq | 4 | {bio} |
+ brig | 4 | {bio} |
+ clonalframeml | 4 | {covid-19,bio} |
+ clonalorigin | 4 | {bio} |
+ embassy-domsearch | 4 | {cloud,bio} |
+ fastml | 4 | {bio} |
+ fsm-lite | 4 | {bio} |
+ ghmm | 4 | {bio} |
+ lagan | 4 | {bio} |
+ lamarc | 4 | {bio} |
libminc | 4 | {imaging-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
- metaphlan2 | 4 | {bio} |
- mrs | 4 | {bio} |
- phybin | 4 | {bio} |
- phyutility | 4 | {bio,cloud} |
+ libsbml | 4 | {bio-dev} |
+ logol | 4 | {bio} |
+ mauve-aligner | 4 | {bio} |
+ microbegps | 4 | {bio} |
+ pbdagcon | 4 | {bio} |
+ perm | 4 | {cloud,bio} |
+ phast | 4 | {bio} |
+ phyutility | 4 | {cloud,bio} |
piler | 4 | {bio} |
- placnet | 4 | {bio} |
- prottest | 4 | {bio,bio-phylogeny} |
- rdp-alignment | 4 | {bio} |
+ prime-phylo | 4 | {cloud,bio} |
+ quorum | 4 | {bio} |
rdp-classifier | 4 | {bio} |
- saint | 4 | {bio} |
- sibsim4 | 4 | {bio,cloud} |
- spaced | 4 | {bio} |
- tracetuner | 4 | {bio} |
- zalign | 4 | {cloud,bio} |
- assemblytics | 3 | {bio} |
- biomaj3-cli | 3 | {cloud} |
- bitseq | 3 | {bio} |
- brig | 3 | {bio} |
- busco | 3 | {bio,covid-19} |
- clonalframeml | 3 | {bio,covid-19} |
- clonalorigin | 3 | {bio} |
+ sga | 4 | {bio} |
+ sibsim4 | 4 | {cloud,bio} |
+ sprai | 4 | {bio} |
+ stacks | 4 | {bio} |
+ surankco | 4 | {bio} |
+ biomaj3-daemon | 3 | {bio} |
+ busco | 3 | {covid-19,bio} |
+ canu | 3 | {bio} |
dindel | 3 | {bio} |
- embassy-domsearch | 3 | {bio,cloud} |
- fastml | 3 | {bio} |
- fsm-lite | 3 | {bio} |
- ghmm | 3 | {bio} |
- lagan | 3 | {bio} |
- lamarc | 3 | {bio} |
- libsbml | 3 | {bio-dev} |
- logol | 3 | {bio} |
- mauve-aligner | 3 | {bio} |
+ estscan | 3 | {bio} |
+ hinge | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
mhap | 3 | {bio,bio-ngs} |
- microbegps | 3 | {bio} |
- pbdagcon | 3 | {bio} |
- perm | 3 | {bio,cloud} |
- phast | 3 | {bio} |
- prime-phylo | 3 | {cloud,bio} |
- proalign | 3 | {bio,bio-phylogeny} |
- quorum | 3 | {bio} |
+ proalign | 3 | {bio-phylogeny,bio} |
rtax | 3 | {bio,cloud} |
- runcircos-gui | 3 | {bio} |
- sga | 3 | {bio} |
sight | 3 | {imaging} |
- sprai | 3 | {bio} |
+ soapaligner | 3 | {bio} |
+ soapsnp | 3 | {bio} |
suitename | 3 | {bio} |
- surankco | 3 | {bio} |
- biomaj3-daemon | 2 | {bio} |
+ yaha | 3 | {bio} |
biosig | 2 | {imaging-dev,physics} |
- blasr | 2 | {bio,bio-ngs} |
- canu | 2 | {bio} |
+ blasr | 2 | {bio-ngs,bio} |
emboss-explorer | 2 | {bio} |
- estscan | 2 | {bio} |
- hinge | 2 | {bio} |
- jellyfish1 | 2 | {bio} |
+ gatb-core | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libctapimkt | 2 | {practice} |
libmuscle | 2 | {bio-dev} |
- oscar | 2 | {practice,data,tools} |
+ oscar | 2 | {tools,practice,data} |
pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
- samblaster | 2 | {covid-19,bio} |
+ samblaster | 2 | {bio,covid-19} |
+ segemehl | 2 | {bio} |
seqan | 2 | {bio-dev} |
simpleitk | 2 | {imaging-dev} |
- soapaligner | 2 | {bio} |
- soapsnp | 2 | {bio} |
- yaha | 2 | {bio} |
+ tvc | 2 | {bio} |
acedb | 1 | {bio,cloud} |
bambamc | 1 | {bio-dev} |
- bbmap | 1 | {covid-19,bio} |
+ bbmap | 1 | {bio,covid-19} |
biosig | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
- cat-bat | 1 | {bio,covid-19} |
+ cat-bat | 1 | {covid-19,bio} |
ctn | 1 | {imaging-dev} |
delly | 1 | {covid-19,bio} |
gatb-core | 1 | {bio-dev} |
- gatb-core | 1 | {bio} |
- htscodecs | 1 | {bio-dev,covid-19} |
- intake | 1 | {bio-dev,bio} |
+ intake | 1 | {bio,bio-dev} |
libbpp-core | 1 | {bio-dev} |
libbpp-phyl | 1 | {bio-dev} |
libbpp-phyl-omics | 1 | {bio-dev} |
@@ -168,32 +168,33 @@ Last-Update: Sun, 06 Dec 2020 01:42:04 +0000
opencfu | 1 | {laboratory} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
+ papyrus | 1 | {imaging-dev} |
pbseqlib | 1 | {bio-dev} |
plasmidid | 1 | {covid-19,bio} |
plasmidseeker | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
- segemehl | 1 | {bio} |
seq-gen | 1 | {bio} |
sift | 1 | {bio} |
srf | 1 | {bio-dev} |
- thesias | 1 | {bio,covid-19} |
+ thesias | 1 | {covid-19,bio} |
trace2dbest | 1 | {bio} |
- tvc | 1 | {bio} |
atropos | 0 | {bio} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
- bustools | 0 | {covid-19,bio} |
+ bmtk | 0 | {psychology} |
+ bustools | 0 | {bio,covid-19} |
camp | 0 | {imaging-dev} |
cufflinks | 0 | {cloud,bio} |
dextractor | 0 | {bio,covid-19} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
+ htscodecs | 0 | {covid-19,bio-dev} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
libmialm | 0 | {imaging-dev} |
@@ -202,30 +203,29 @@ Last-Update: Sun, 06 Dec 2020 01:42:04 +0000
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
- nanosv | 0 | {covid-19,bio} |
+ milib | 0 | {covid-19,bio-dev} |
+ nanosv | 0 | {bio,covid-19} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
- papyrus | 0 | {imaging-dev} |
parallel-fastq-dump | 0 | {covid-19} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pigx-rnaseq | 0 | {covid-19,bio} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
- pplacer | 0 | {covid-19,bio,bio-phylogeny} |
+ pplacer | 0 | {covid-19,bio-phylogeny,bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
q2templates | 0 | {bio,bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
- shovill | 0 | {covid-19,bio} |
+ shovill | 0 | {bio,covid-19} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {bio,covid-19} |
- spaln | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {covid-19,bio} |
+ spaln | 0 | {bio,covid-19} |
tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
varscan | 0 | {bio,covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e242ea5180c19f62af66572d0bbfb20b3190135a
--
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