[med-svn] [Git][med-team/bcbio][master] 2 commits: Extended paths available for testing

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
a2aa99d1 by Steffen Moeller at 2020-12-07T18:40:02+01:00
Extended paths available for testing

- - - - -
097a6fd6 by Steffen Moeller at 2020-12-07T18:40:30+01:00
Added build dependencies

- - - - -


2 changed files:

- debian/control
- debian/patches/pythonpaths.patch


Changes:

=====================================
debian/control
=====================================
@@ -57,7 +57,9 @@ Build-Depends: debhelper-compat (= 13),
                r-other-wasabi <!nocheck>,
                r-bioc-htsfilter <!nocheck>,
                r-bioc-degreport <!nocheck>,
+               r-bioc-purecn <!nocheck>,
                r-cran-tidyverse <!nocheck>,
+               r-bioc-titancna <!nocheck>,
                r-bioc-tximport <!nocheck>,
                r-other-wasabi <!nocheck>,
                salmon <!nocheck>,
@@ -112,6 +114,8 @@ Recommends:
          python3-statsmodels,
          python3-tabulate,
          r-other-wasabi,
+         r-bioc-purecn,
+         r-bioc-titancna,
          seqan-apps,
          vcfanno,
          vt


=====================================
debian/patches/pythonpaths.patch
=====================================
@@ -67,7 +67,7 @@ Index: bcbio/tests/run_tests.sh
  
  unset PYTHONHOME
 -unset PYTHONPATH
-+export PATH=$(pwd)/scripts:$PATH
++export PATH=$(pwd)/scripts:/usr/lib/debian-med/bin:$PATH
 +export PYTHONPATH=$(pwd)
  export PYTHONNOUSERSITE=1
  # Ensure version.py exists in raw cloned bcbio directory



View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/d94cceaa36d209359b470b29278d2fac746f2901...097a6fd6f3b31b588aa034a942d480a124352aaa

-- 
View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/d94cceaa36d209359b470b29278d2fac746f2901...097a6fd6f3b31b588aa034a942d480a124352aaa
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