[med-svn] [Git][med-team/python-parasail][master] 6 commits: New upstream version 1.2.2
Nilesh Patra
gitlab at salsa.debian.org
Tue Dec 8 19:41:21 GMT 2020
Nilesh Patra pushed to branch master at Debian Med / python-parasail
Commits:
b46c4adc by Nilesh Patra at 2020-12-09T01:05:12+05:30
New upstream version 1.2.2
- - - - -
2c466c3e by Nilesh Patra at 2020-12-09T01:05:12+05:30
routine-update: New upstream version
- - - - -
ae6756a3 by Nilesh Patra at 2020-12-09T01:05:12+05:30
Update upstream source from tag 'upstream/1.2.2'
Update to upstream version '1.2.2'
with Debian dir f46ab0dcdbae078d877fbca7dc8231413978e8f8
- - - - -
d2abd945 by Nilesh Patra at 2020-12-09T01:05:13+05:30
routine-update: Standards-Version: 4.5.1
- - - - -
18e9f754 by Nilesh Patra at 2020-12-09T01:08:09+05:30
Refresh patches
- - - - -
5c01174f by Nilesh Patra at 2020-12-09T01:08:31+05:30
routine-update: Ready to upload to unstable
- - - - -
7 changed files:
- CHANGELOG.rst
- debian/changelog
- debian/control
- debian/patches/find-parasail-so-file-from-system.patch
- parasail/__init__.py
- + requirements.txt
- setup.py
Changes:
=====================================
CHANGELOG.rst
=====================================
@@ -10,6 +10,11 @@ Unreleased_
-----------
The Unreleased section will be empty for tagged releases. Unreleased functionality appears in the develop branch.
+-------------------
+1.2.2_ - 2020-12-01
+-------------------
+- Fix #55 Error installing parasail on macos
+
-------------------
1.2.1_ - 2020-11-03
-------------------
@@ -148,7 +153,8 @@ The Unreleased section will be empty for tagged releases. Unreleased functionali
-------------------
First tagged release. The 'master' branch always represents the latest stable code. Tagged releases correspond to pypi releases.
-.. _Unreleased: https://github.com/jeffdaily/parasail-python/compare/v1.2.1...master
+.. _Unreleased: https://github.com/jeffdaily/parasail-python/compare/v1.2.2...master
+.. _1.2.2: https://github.com/jeffdaily/parasail-python/compare/v1.2.1...v1.2.2
.. _1.2.1: https://github.com/jeffdaily/parasail-python/compare/v1.2...v1.2.1
.. _1.2: https://github.com/jeffdaily/parasail-python/compare/v1.1.20...v1.2
.. _1.1.20: https://github.com/jeffdaily/parasail-python/compare/v1.1.19...v1.1.20
=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+python-parasail (1.2.2-1) unstable; urgency=medium
+
+ * New upstream version
+ * Standards-Version: 4.5.1 (routine-update)
+ * Refresh patch
+
+ -- Nilesh Patra <npatra974 at gmail.com> Wed, 09 Dec 2020 01:08:31 +0530
+
python-parasail (1.2.1-1) unstable; urgency=medium
* New upstream version
=====================================
debian/control
=====================================
@@ -11,7 +11,7 @@ Build-Depends: debhelper-compat (= 13),
python3-wheel,
libparasail-dev,
python3-pytest <!nocheck>
-Standards-Version: 4.5.0
+Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/python-parasail
Vcs-Git: https://salsa.debian.org/med-team/python-parasail.git
Homepage: https://github.com/jeffdaily/parasail-python
=====================================
debian/patches/find-parasail-so-file-from-system.patch
=====================================
@@ -4,15 +4,7 @@ Last-Update: Thu, 23 Apr 2020 01:41:10 +0530
--- a/setup.py
+++ b/setup.py
-@@ -422,7 +422,6 @@
-
- class bdist_wheel(bdist_wheel_):
- def run(self):
-- prepare_shared_lib()
- bdist_wheel_.run(self)
-
- def finalize_options(self):
-@@ -433,7 +432,6 @@
+@@ -421,7 +421,6 @@
class install(install_):
def run(self):
@@ -20,3 +12,11 @@ Last-Update: Thu, 23 Apr 2020 01:41:10 +0530
install_.run(self)
+@@ -431,7 +430,6 @@
+ from wheel.bdist_wheel import bdist_wheel as bdist_wheel_
+ class bdist_wheel(bdist_wheel_):
+ def run(self):
+- prepare_shared_lib()
+ bdist_wheel_.run(self)
+
+ def finalize_options(self):
=====================================
parasail/__init__.py
=====================================
@@ -6,7 +6,7 @@ import sys
import numpy
-__version__ = "1.2.1"
+__version__ = "1.2.2"
__title__ = "parasail"
__description__ = "pairwise sequence alignment library"
__uri__ = "https://github.com/jeffdaily/parasail-python"
=====================================
requirements.txt
=====================================
@@ -0,0 +1 @@
+numpy
=====================================
setup.py
=====================================
@@ -15,7 +15,6 @@ import zipfile
from distutils.util import get_platform
from setuptools import setup
-from wheel.bdist_wheel import bdist_wheel as bdist_wheel_
from setuptools.command.install import install as install_
###############################################################################
@@ -47,7 +46,7 @@ CLASSIFIERS = [
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Topic :: Software Development :: Libraries :: Python Modules",
]
-INSTALL_REQUIRES = ["numpy", "wheel"]
+INSTALL_REQUIRES = ["numpy"]
###############################################################################
@@ -420,17 +419,6 @@ def prepare_shared_lib():
if not os.path.exists(libpath):
raise RuntimeError("Unable to find shared library {}.".format(libname))
-class bdist_wheel(bdist_wheel_):
- def run(self):
- prepare_shared_lib()
- bdist_wheel_.run(self)
-
- def finalize_options(self):
- bdist_wheel_.finalize_options(self)
- self.universal = True
- self.plat_name_supplied = True
- self.plat_name = get_platform()
-
class install(install_):
def run(self):
prepare_shared_lib()
@@ -438,6 +426,23 @@ class install(install_):
if __name__ == "__main__":
+ cmdclass = {}
+ try:
+ from wheel.bdist_wheel import bdist_wheel as bdist_wheel_
+ class bdist_wheel(bdist_wheel_):
+ def run(self):
+ prepare_shared_lib()
+ bdist_wheel_.run(self)
+
+ def finalize_options(self):
+ bdist_wheel_.finalize_options(self)
+ self.universal = True
+ self.plat_name_supplied = True
+ self.plat_name = get_platform()
+ cmdclass = {'bdist_wheel': bdist_wheel, 'install': install}
+ except ImportError:
+ cmdclass = {'install': install}
+
long_description = ""
try:
long_description = open("README.rst", encoding="utf8").read()
@@ -457,7 +462,7 @@ if __name__ == "__main__":
keywords=KEYWORDS,
packages=PACKAGES,
package_data={"parasail": [get_libname()]},
- cmdclass={'bdist_wheel': bdist_wheel, 'install': install},
+ cmdclass=cmdclass,
zip_safe=False,
classifiers=CLASSIFIERS,
install_requires=INSTALL_REQUIRES,
View it on GitLab: https://salsa.debian.org/med-team/python-parasail/-/compare/781a7f2b8c725af25091bb7bde5eddacd55bf39a...5c01174fbf5090e3b75d351008b75f57f2a0aac4
--
View it on GitLab: https://salsa.debian.org/med-team/python-parasail/-/compare/781a7f2b8c725af25091bb7bde5eddacd55bf39a...5c01174fbf5090e3b75d351008b75f57f2a0aac4
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20201208/b442dd52/attachment-0001.html>
More information about the debian-med-commit
mailing list