Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
13de48e3 by Andreas Tille at 2020-12-09T13:47:03+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,128 +1,127 @@
-Last-Update: Wed, 09 Dec 2020 01:42:04 +0000
+Last-Update: Wed, 09 Dec 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 188 | {covid-19,imaging} |
+ dcmtk | 191 | {imaging,covid-19} |
orthanc | 101 | {imaging,covid-19,practice} |
- orthanc-wsi | 52 | {imaging,covid-19,oncology,laboratory,his,practice} |
- gdcm | 35 | {imaging-dev} |
- htsjdk | 31 | {bio-dev} |
+ orthanc-wsi | 52 | {covid-19,laboratory,practice,oncology,his,imaging} |
+ gdcm | 38 | {imaging-dev} |
+ htsjdk | 30 | {bio-dev} |
dicom3tools | 23 | {imaging} |
- gdcm | 21 | {imaging,covid-19} |
- dcm2niix | 20 | {imaging} |
- dicomscope | 20 | {imaging} |
- ngs-sdk | 17 | {bio-dev} |
- nifticlib | 17 | {imaging} |
- adun.app | 16 | {bio} |
- gnumed-server | 16 | {covid-19,practice} |
+ gdcm | 22 | {imaging,covid-19} |
+ dcm2niix | 19 | {imaging} |
+ dicomscope | 19 | {imaging} |
+ gnumed-server | 17 | {covid-19,practice} |
+ nifticlib | 16 | {imaging} |
+ adun.app | 15 | {bio} |
gdcm | 15 | {imaging-dev} |
invesalius | 15 | {imaging} |
- minc-tools | 14 | {imaging} |
+ minc-tools | 15 | {imaging} |
+ ngs-sdk | 15 | {bio-dev} |
+ dicomnifti | 14 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
- ngs-sdk | 10 | {bio-dev} |
- nifticlib | 10 | {imaging-dev} |
+ pixelmed | 11 | {imaging} |
openslide | 10 | {imaging} |
- pixelmed | 10 | {imaging} |
biosig | 9 | {imaging,physics} |
ea-utils | 9 | {bio} |
- librg-utils-perl | 9 | {bio} |
+ melting | 9 | {bio,cloud} |
+ ngs-sdk | 9 | {bio-dev} |
orthanc-webviewer | 9 | {imaging} |
plastimatch | 9 | {imaging} |
- jebl2 | 8 | {bio-dev} |
+ seqsero | 9 | {bio} |
+ vtk-dicom | 9 | {imaging} |
+ bamkit | 8 | {bio,covid-19} |
king | 8 | {imaging,typesetting} |
- melting | 8 | {cloud,bio} |
nifti2dicom | 8 | {imaging} |
- salmon | 8 | {bio,covid-19} |
- seqsero | 8 | {bio} |
- vtk-dicom | 8 | {imaging} |
- bamkit | 7 | {covid-19,bio} |
- biojava-live | 7 | {bio-dev} |
- fastlink | 7 | {cloud,bio} |
+ salmon | 8 | {covid-19,bio} |
+ fastlink | 7 | {bio,cloud} |
insighttoolkit4 | 7 | {imaging-dev} |
+ jebl2 | 7 | {bio-dev} |
+ librg-utils-perl | 7 | {bio} |
nifti2dicom | 7 | {imaging} |
orthanc-dicomweb | 7 | {imaging,covid-19} |
pymia | 7 | {imaging-dev} |
+ rambo-k | 7 | {bio} |
staden | 7 | {bio} |
- treeview | 7 | {bio-phylogeny,bio} |
- arden | 6 | {cloud,bio} |
+ treeview | 7 | {bio,bio-phylogeny} |
bart-view | 6 | {imaging} |
+ biojava-live | 6 | {bio-dev} |
libncl | 6 | {bio} |
libpal-java | 6 | {bio-dev} |
obitools | 6 | {bio} |
orthanc-mysql | 6 | {imaging} |
orthanc-postgresql | 6 | {imaging} |
- rambo-k | 6 | {bio} |
- anfo | 5 | {cloud,bio} |
- beast-mcmc | 5 | {bio,bio-phylogeny} |
- biomaj3-cli | 5 | {cloud} |
+ arden | 5 | {bio,cloud} |
bio-tradis | 5 | {bio,bio-dev} |
dicompyler | 5 | {oncology} |
ecopcr | 5 | {bio} |
elastix | 5 | {imaging} |
embassy-domainatrix | 5 | {bio,cloud} |
- embassy-domalign | 5 | {cloud,bio} |
getdata | 5 | {bio} |
ipig | 5 | {bio} |
jmodeltest | 5 | {bio-phylogeny,bio} |
libdivsufsort | 5 | {bio-dev} |
- metaphlan2 | 5 | {bio} |
mipe | 5 | {cloud,bio} |
- paraclu | 5 | {cloud,bio} |
+ paraclu | 5 | {bio,cloud} |
phybin | 5 | {bio} |
+ phyutility | 5 | {cloud,bio} |
placnet | 5 | {bio} |
- prottest | 5 | {bio,bio-phylogeny} |
+ prottest | 5 | {bio-phylogeny,bio} |
rdp-alignment | 5 | {bio} |
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
spaced | 5 | {bio} |
spread-phy | 5 | {bio-phylogeny,bio} |
tracetuner | 5 | {bio} |
- zalign | 5 | {cloud,bio} |
- assemblytics | 4 | {bio} |
- biomaj3-daemon | 4 | {bio} |
+ anfo | 4 | {cloud,bio} |
+ beast-mcmc | 4 | {bio,bio-phylogeny} |
+ biomaj3-cli | 4 | {cloud} |
bitseq | 4 | {bio} |
brig | 4 | {bio} |
- clonalframeml | 4 | {covid-19,bio} |
clonalorigin | 4 | {bio} |
+ embassy-domalign | 4 | {cloud,bio} |
embassy-domsearch | 4 | {bio,cloud} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
- ghmm | 4 | {bio} |
- lagan | 4 | {bio} |
+ jellyfish1 | 4 | {bio} |
lamarc | 4 | {bio} |
libminc | 4 | {imaging-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
libsbml | 4 | {bio-dev} |
logol | 4 | {bio} |
mauve-aligner | 4 | {bio} |
+ metaphlan2 | 4 | {bio} |
microbegps | 4 | {bio} |
pbdagcon | 4 | {bio} |
perm | 4 | {cloud,bio} |
phast | 4 | {bio} |
- phyutility | 4 | {cloud,bio} |
piler | 4 | {bio} |
prime-phylo | 4 | {cloud,bio} |
quorum | 4 | {bio} |
rdp-classifier | 4 | {bio} |
sga | 4 | {bio} |
- sibsim4 | 4 | {bio,cloud} |
+ sibsim4 | 4 | {cloud,bio} |
sprai | 4 | {bio} |
stacks | 4 | {bio} |
surankco | 4 | {bio} |
+ zalign | 4 | {bio,cloud} |
+ assemblytics | 3 | {bio} |
+ biomaj3-daemon | 3 | {bio} |
busco | 3 | {bio,covid-19} |
canu | 3 | {bio} |
+ clonalframeml | 3 | {covid-19,bio} |
dindel | 3 | {bio} |
estscan | 3 | {bio} |
+ ghmm | 3 | {bio} |
hinge | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
+ lagan | 3 | {bio} |
mhap | 3 | {bio-ngs,bio} |
- proalign | 3 | {bio,bio-phylogeny} |
- rtax | 3 | {bio,cloud} |
+ proalign | 3 | {bio-phylogeny,bio} |
+ rtax | 3 | {cloud,bio} |
salmid | 3 | {bio} |
soapaligner | 3 | {bio} |
soapsnp | 3 | {bio} |
suitename | 3 | {bio} |
- yaha | 3 | {bio} |
biosig | 2 | {physics,imaging-dev} |
blasr | 2 | {bio,bio-ngs} |
emboss-explorer | 2 | {bio} |
@@ -132,22 +131,23 @@ Last-Update: Wed, 09 Dec 2020 01:42:04 +0000
libctapimkt | 2 | {practice} |
libmuscle | 2 | {bio-dev} |
multiqc | 2 | {covid-19,bio} |
- oscar | 2 | {data,tools,practice} |
+ oscar | 2 | {tools,practice,data} |
pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
- samblaster | 2 | {covid-19,bio} |
+ samblaster | 2 | {bio,covid-19} |
segemehl | 2 | {bio} |
seqan | 2 | {bio-dev} |
sight | 2 | {imaging} |
simpleitk | 2 | {imaging-dev} |
tvc | 2 | {bio} |
- acedb | 1 | {bio,cloud} |
+ yaha | 2 | {bio} |
+ acedb | 1 | {cloud,bio} |
bambamc | 1 | {bio-dev} |
- bbmap | 1 | {bio,covid-19} |
+ bbmap | 1 | {covid-19,bio} |
biosig | 1 | {imaging-dev,physics} |
blimps | 1 | {bio} |
ctn | 1 | {imaging-dev} |
- delly | 1 | {covid-19,bio} |
+ delly | 1 | {bio,covid-19} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
intake | 1 | {bio,bio-dev} |
@@ -175,26 +175,26 @@ Last-Update: Wed, 09 Dec 2020 01:42:04 +0000
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
pbseqlib | 1 | {bio-dev} |
- plasmidid | 1 | {covid-19,bio} |
+ plasmidid | 1 | {bio,covid-19} |
plasmidseeker | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
seq-gen | 1 | {bio} |
sift | 1 | {bio} |
srf | 1 | {bio-dev} |
- thesias | 1 | {covid-19,bio} |
+ thesias | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
atropos | 0 | {bio} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
- bustools | 0 | {bio,covid-19} |
+ bustools | 0 | {covid-19,bio} |
camp | 0 | {imaging-dev} |
cat-bat | 0 | {bio,covid-19} |
cufflinks | 0 | {cloud,bio} |
dextractor | 0 | {covid-19,bio} |
fis-gtm | 0 | {his} |
- htscodecs | 0 | {bio-dev,covid-19} |
+ htscodecs | 0 | {covid-19,bio-dev} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -208,7 +208,7 @@ Last-Update: Wed, 09 Dec 2020 01:42:04 +0000
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
+ milib | 0 | {covid-19,bio-dev} |
nanosv | 0 | {covid-19,bio} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
@@ -218,11 +218,11 @@ Last-Update: Wed, 09 Dec 2020 01:42:04 +0000
pigx-rnaseq | 0 | {covid-19,bio} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
- pplacer | 0 | {covid-19,bio-phylogeny,bio} |
+ pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio-dev,covid-19} |
python-seqcluster | 0 | {bio} |
- q2templates | 0 | {bio,bio-dev} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
+ q2templates | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -231,19 +231,20 @@ Last-Update: Wed, 09 Dec 2020 01:42:04 +0000
simrisc | 0 | {oncology} |
skesa | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {covid-19,bio} |
- spaln | 0 | {bio,covid-19} |
- tophat-recondition | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
+ spaln | 0 | {covid-19,bio} |
+ tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
- varscan | 0 | {bio,covid-19} |
+ varscan | 0 | {covid-19,bio} |
vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
yanagiba | 0 | {covid-19,bio} |
mssstest | -1 | {tools} |
+ nifticlib | -1 | {imaging-dev} |
orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
q2-sample-classifier | -1 | {bio-dev,bio} |
sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
-(274 rows)
+(275 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/13de48e3ae8924c3b1ddfeac861505e78ce4782a
--
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