Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
aeb917f2 by Andreas Tille at 2020-12-10T13:45:25+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,68 +1,65 @@
-Last-Update: Thu, 10 Dec 2020 01:42:04 +0000
+Last-Update: Thu, 10 Dec 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 191 | {imaging,covid-19} |
- orthanc | 101 | {imaging,covid-19,practice} |
- orthanc-wsi | 52 | {covid-19,laboratory,practice,oncology,his,imaging} |
+ dcmtk | 194 | {imaging,covid-19} |
+ orthanc | 104 | {imaging,covid-19,practice} |
+ orthanc-wsi | 53 | {covid-19,laboratory,practice,oncology,his,imaging} |
gdcm | 38 | {imaging-dev} |
htsjdk | 30 | {bio-dev} |
dicom3tools | 23 | {imaging} |
- gdcm | 22 | {imaging,covid-19} |
- dcm2niix | 19 | {imaging} |
- dicomscope | 19 | {imaging} |
+ gdcm | 21 | {imaging,covid-19} |
+ dcm2niix | 20 | {imaging} |
+ dicomscope | 17 | {imaging} |
gnumed-server | 17 | {covid-19,practice} |
+ adun.app | 16 | {bio} |
nifticlib | 16 | {imaging} |
- adun.app | 15 | {bio} |
- gdcm | 15 | {imaging-dev} |
invesalius | 15 | {imaging} |
- minc-tools | 15 | {imaging} |
ngs-sdk | 15 | {bio-dev} |
dicomnifti | 14 | {imaging} |
+ gdcm | 14 | {imaging-dev} |
+ minc-tools | 14 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
pixelmed | 11 | {imaging} |
openslide | 10 | {imaging} |
+ orthanc-webviewer | 10 | {imaging} |
+ plastimatch | 10 | {imaging} |
biosig | 9 | {imaging,physics} |
ea-utils | 9 | {bio} |
melting | 9 | {bio,cloud} |
ngs-sdk | 9 | {bio-dev} |
- orthanc-webviewer | 9 | {imaging} |
- plastimatch | 9 | {imaging} |
- seqsero | 9 | {bio} |
vtk-dicom | 9 | {imaging} |
- bamkit | 8 | {bio,covid-19} |
king | 8 | {imaging,typesetting} |
+ librg-utils-perl | 8 | {bio} |
nifti2dicom | 8 | {imaging} |
+ orthanc-dicomweb | 8 | {imaging,covid-19} |
salmon | 8 | {covid-19,bio} |
+ seqsero | 8 | {bio} |
+ bamkit | 7 | {bio,covid-19} |
fastlink | 7 | {bio,cloud} |
insighttoolkit4 | 7 | {imaging-dev} |
jebl2 | 7 | {bio-dev} |
- librg-utils-perl | 7 | {bio} |
nifti2dicom | 7 | {imaging} |
- orthanc-dicomweb | 7 | {imaging,covid-19} |
pymia | 7 | {imaging-dev} |
rambo-k | 7 | {bio} |
staden | 7 | {bio} |
treeview | 7 | {bio,bio-phylogeny} |
- bart-view | 6 | {imaging} |
biojava-live | 6 | {bio-dev} |
+ dicompyler | 6 | {oncology} |
libncl | 6 | {bio} |
libpal-java | 6 | {bio-dev} |
- obitools | 6 | {bio} |
orthanc-mysql | 6 | {imaging} |
orthanc-postgresql | 6 | {imaging} |
arden | 5 | {bio,cloud} |
- bio-tradis | 5 | {bio,bio-dev} |
- dicompyler | 5 | {oncology} |
+ bart-view | 5 | {imaging} |
ecopcr | 5 | {bio} |
elastix | 5 | {imaging} |
- embassy-domainatrix | 5 | {bio,cloud} |
getdata | 5 | {bio} |
ipig | 5 | {bio} |
jmodeltest | 5 | {bio-phylogeny,bio} |
libdivsufsort | 5 | {bio-dev} |
mipe | 5 | {cloud,bio} |
- paraclu | 5 | {bio,cloud} |
+ obitools | 5 | {bio} |
phybin | 5 | {bio} |
phyutility | 5 | {cloud,bio} |
placnet | 5 | {bio} |
@@ -70,20 +67,19 @@ Last-Update: Thu, 10 Dec 2020 01:42:04 +0000
rdp-alignment | 5 | {bio} |
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
- spaced | 5 | {bio} |
spread-phy | 5 | {bio-phylogeny,bio} |
- tracetuner | 5 | {bio} |
anfo | 4 | {cloud,bio} |
beast-mcmc | 4 | {bio,bio-phylogeny} |
biomaj3-cli | 4 | {cloud} |
- bitseq | 4 | {bio} |
+ bio-tradis | 4 | {bio,bio-dev} |
brig | 4 | {bio} |
- clonalorigin | 4 | {bio} |
+ embassy-domainatrix | 4 | {bio,cloud} |
embassy-domalign | 4 | {cloud,bio} |
embassy-domsearch | 4 | {bio,cloud} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
jellyfish1 | 4 | {bio} |
+ lagan | 4 | {bio} |
lamarc | 4 | {bio} |
libminc | 4 | {imaging-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
@@ -94,29 +90,34 @@ Last-Update: Thu, 10 Dec 2020 01:42:04 +0000
microbegps | 4 | {bio} |
pbdagcon | 4 | {bio} |
perm | 4 | {cloud,bio} |
- phast | 4 | {bio} |
piler | 4 | {bio} |
prime-phylo | 4 | {cloud,bio} |
- quorum | 4 | {bio} |
rdp-classifier | 4 | {bio} |
sga | 4 | {bio} |
sibsim4 | 4 | {cloud,bio} |
+ spaced | 4 | {bio} |
sprai | 4 | {bio} |
stacks | 4 | {bio} |
surankco | 4 | {bio} |
+ tracetuner | 4 | {bio} |
zalign | 4 | {bio,cloud} |
assemblytics | 3 | {bio} |
biomaj3-daemon | 3 | {bio} |
+ bitseq | 3 | {bio} |
busco | 3 | {bio,covid-19} |
canu | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
+ clonalorigin | 3 | {bio} |
dindel | 3 | {bio} |
- estscan | 3 | {bio} |
ghmm | 3 | {bio} |
hinge | 3 | {bio} |
- lagan | 3 | {bio} |
mhap | 3 | {bio-ngs,bio} |
+ multiqc | 3 | {covid-19,bio} |
+ oscar | 3 | {tools,practice,data} |
+ paraclu | 3 | {bio,cloud} |
+ phast | 3 | {bio} |
proalign | 3 | {bio-phylogeny,bio} |
+ quorum | 3 | {bio} |
rtax | 3 | {cloud,bio} |
salmid | 3 | {bio} |
soapaligner | 3 | {bio} |
@@ -125,13 +126,12 @@ Last-Update: Thu, 10 Dec 2020 01:42:04 +0000
biosig | 2 | {physics,imaging-dev} |
blasr | 2 | {bio,bio-ngs} |
emboss-explorer | 2 | {bio} |
+ estscan | 2 | {bio} |
gatb-core | 2 | {bio} |
gifticlib | 2 | {imaging-dev} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libctapimkt | 2 | {practice} |
libmuscle | 2 | {bio-dev} |
- multiqc | 2 | {covid-19,bio} |
- oscar | 2 | {tools,practice,data} |
pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
samblaster | 2 | {bio,covid-19} |
@@ -174,6 +174,7 @@ Last-Update: Thu, 10 Dec 2020 01:42:04 +0000
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
+ pbcopper | 1 | {bio-dev} |
pbseqlib | 1 | {bio-dev} |
plasmidid | 1 | {bio,covid-19} |
plasmidseeker | 1 | {bio} |
@@ -213,7 +214,6 @@ Last-Update: Thu, 10 Dec 2020 01:42:04 +0000
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
- pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pigx-rnaseq | 0 | {covid-19,bio} |
pilercr | 0 | {bio} |
@@ -240,11 +240,10 @@ Last-Update: Thu, 10 Dec 2020 01:42:04 +0000
vtk-dicom | 0 | {imaging-dev} |
yanagiba | 0 | {covid-19,bio} |
mssstest | -1 | {tools} |
- nifticlib | -1 | {imaging-dev} |
orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
q2-sample-classifier | -1 | {bio-dev,bio} |
sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
-(275 rows)
+(274 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/aeb917f21c0c92763cd6ae172dd390a27c6b8c3e
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View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/aeb917f21c0c92763cd6ae172dd390a27c6b8c3e
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