Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d2ec1743 by Andreas Tille at 2020-12-11T13:46:50+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,83 +1,87 @@
-Last-Update: Fri, 11 Dec 2020 01:42:04 +0000
+Last-Update: Fri, 11 Dec 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 194 | {imaging,covid-19} |
- orthanc | 104 | {imaging,covid-19,practice} |
- orthanc-wsi | 53 | {covid-19,laboratory,practice,oncology,his,imaging} |
- gdcm | 38 | {imaging-dev} |
- htsjdk | 30 | {bio-dev} |
+ dcmtk | 196 | {imaging,covid-19} |
+ orthanc | 105 | {imaging,covid-19,practice} |
+ orthanc-wsi | 55 | {covid-19,laboratory,practice,oncology,his,imaging} |
+ gdcm | 39 | {imaging-dev} |
+ htsjdk | 32 | {bio-dev} |
dicom3tools | 23 | {imaging} |
+ dcm2niix | 21 | {imaging} |
gdcm | 21 | {imaging,covid-19} |
- dcm2niix | 20 | {imaging} |
+ gnumed-server | 18 | {covid-19,practice} |
dicomscope | 17 | {imaging} |
- gnumed-server | 17 | {covid-19,practice} |
adun.app | 16 | {bio} |
nifticlib | 16 | {imaging} |
+ dicomnifti | 15 | {imaging} |
invesalius | 15 | {imaging} |
+ minc-tools | 15 | {imaging} |
ngs-sdk | 15 | {bio-dev} |
- dicomnifti | 14 | {imaging} |
- gdcm | 14 | {imaging-dev} |
- minc-tools | 14 | {imaging} |
+ gdcm | 13 | {imaging-dev} |
ngs-sdk | 11 | {bio-dev} |
pixelmed | 11 | {imaging} |
+ melting | 10 | {bio,cloud} |
openslide | 10 | {imaging} |
orthanc-webviewer | 10 | {imaging} |
plastimatch | 10 | {imaging} |
biosig | 9 | {imaging,physics} |
ea-utils | 9 | {bio} |
- melting | 9 | {bio,cloud} |
- ngs-sdk | 9 | {bio-dev} |
vtk-dicom | 9 | {imaging} |
+ fastlink | 8 | {bio,cloud} |
+ insighttoolkit4 | 8 | {imaging-dev} |
+ jebl2 | 8 | {bio-dev} |
king | 8 | {imaging,typesetting} |
librg-utils-perl | 8 | {bio} |
+ ngs-sdk | 8 | {bio-dev} |
nifti2dicom | 8 | {imaging} |
orthanc-dicomweb | 8 | {imaging,covid-19} |
salmon | 8 | {covid-19,bio} |
- seqsero | 8 | {bio} |
bamkit | 7 | {bio,covid-19} |
- fastlink | 7 | {bio,cloud} |
- insighttoolkit4 | 7 | {imaging-dev} |
- jebl2 | 7 | {bio-dev} |
+ biojava-live | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
pymia | 7 | {imaging-dev} |
rambo-k | 7 | {bio} |
+ seqsero | 7 | {bio} |
staden | 7 | {bio} |
treeview | 7 | {bio,bio-phylogeny} |
- biojava-live | 6 | {bio-dev} |
dicompyler | 6 | {oncology} |
libncl | 6 | {bio} |
libpal-java | 6 | {bio-dev} |
+ obitools | 6 | {bio} |
orthanc-mysql | 6 | {imaging} |
orthanc-postgresql | 6 | {imaging} |
+ spread-phy | 6 | {bio-phylogeny,bio} |
arden | 5 | {bio,cloud} |
bart-view | 5 | {imaging} |
+ beast-mcmc | 5 | {bio,bio-phylogeny} |
ecopcr | 5 | {bio} |
elastix | 5 | {imaging} |
+ embassy-domsearch | 5 | {bio,cloud} |
getdata | 5 | {bio} |
ipig | 5 | {bio} |
jmodeltest | 5 | {bio-phylogeny,bio} |
libdivsufsort | 5 | {bio-dev} |
+ mauve-aligner | 5 | {bio} |
mipe | 5 | {cloud,bio} |
- obitools | 5 | {bio} |
+ pbdagcon | 5 | {bio} |
phybin | 5 | {bio} |
phyutility | 5 | {cloud,bio} |
placnet | 5 | {bio} |
+ prime-phylo | 5 | {cloud,bio} |
prottest | 5 | {bio-phylogeny,bio} |
rdp-alignment | 5 | {bio} |
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
- spread-phy | 5 | {bio-phylogeny,bio} |
anfo | 4 | {cloud,bio} |
- beast-mcmc | 4 | {bio,bio-phylogeny} |
biomaj3-cli | 4 | {cloud} |
bio-tradis | 4 | {bio,bio-dev} |
brig | 4 | {bio} |
embassy-domainatrix | 4 | {bio,cloud} |
embassy-domalign | 4 | {cloud,bio} |
- embassy-domsearch | 4 | {bio,cloud} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
+ ghmm | 4 | {bio} |
jellyfish1 | 4 | {bio} |
lagan | 4 | {bio} |
lamarc | 4 | {bio} |
@@ -85,16 +89,15 @@ Last-Update: Fri, 11 Dec 2020 01:42:04 +0000
librdp-taxonomy-tree-java | 4 | {bio-dev} |
libsbml | 4 | {bio-dev} |
logol | 4 | {bio} |
- mauve-aligner | 4 | {bio} |
metaphlan2 | 4 | {bio} |
microbegps | 4 | {bio} |
- pbdagcon | 4 | {bio} |
perm | 4 | {cloud,bio} |
+ phast | 4 | {bio} |
piler | 4 | {bio} |
- prime-phylo | 4 | {cloud,bio} |
rdp-classifier | 4 | {bio} |
sga | 4 | {bio} |
sibsim4 | 4 | {cloud,bio} |
+ soapsnp | 4 | {bio} |
spaced | 4 | {bio} |
sprai | 4 | {bio} |
stacks | 4 | {bio} |
@@ -109,22 +112,20 @@ Last-Update: Fri, 11 Dec 2020 01:42:04 +0000
clonalframeml | 3 | {covid-19,bio} |
clonalorigin | 3 | {bio} |
dindel | 3 | {bio} |
- ghmm | 3 | {bio} |
hinge | 3 | {bio} |
mhap | 3 | {bio-ngs,bio} |
multiqc | 3 | {covid-19,bio} |
oscar | 3 | {tools,practice,data} |
paraclu | 3 | {bio,cloud} |
- phast | 3 | {bio} |
proalign | 3 | {bio-phylogeny,bio} |
quorum | 3 | {bio} |
rtax | 3 | {cloud,bio} |
salmid | 3 | {bio} |
soapaligner | 3 | {bio} |
- soapsnp | 3 | {bio} |
suitename | 3 | {bio} |
biosig | 2 | {physics,imaging-dev} |
blasr | 2 | {bio,bio-ngs} |
+ delly | 2 | {bio,covid-19} |
emboss-explorer | 2 | {bio} |
estscan | 2 | {bio} |
gatb-core | 2 | {bio} |
@@ -147,7 +148,6 @@ Last-Update: Fri, 11 Dec 2020 01:42:04 +0000
biosig | 1 | {imaging-dev,physics} |
blimps | 1 | {bio} |
ctn | 1 | {imaging-dev} |
- delly | 1 | {bio,covid-19} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
intake | 1 | {bio,bio-dev} |
@@ -178,6 +178,7 @@ Last-Update: Fri, 11 Dec 2020 01:42:04 +0000
pbseqlib | 1 | {bio-dev} |
plasmidid | 1 | {bio,covid-19} |
plasmidseeker | 1 | {bio} |
+ q2templates | 1 | {bio-dev,bio} |
samtools-legacy | 1 | {bio-dev} |
seq-gen | 1 | {bio} |
sift | 1 | {bio} |
@@ -220,9 +221,8 @@ Last-Update: Fri, 11 Dec 2020 01:42:04 +0000
pique | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
- q2templates | 0 | {bio-dev,bio} |
+ python-seqcluster | 0 | {bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d2ec1743ba8c4bfd0148c65f0095a9f285c94215
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d2ec1743ba8c4bfd0148c65f0095a9f285c94215
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