Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
81b2d943 by Andreas Tille at 2020-12-12T13:45:26+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,100 +1,104 @@
-Last-Update: Sat, 12 Dec 2020 01:42:03 +0000
+Last-Update: Sat, 12 Dec 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 196 | {imaging,covid-19} |
orthanc | 105 | {imaging,covid-19,practice} |
orthanc-wsi | 55 | {covid-19,laboratory,practice,oncology,his,imaging} |
- gdcm | 39 | {imaging-dev} |
- htsjdk | 32 | {bio-dev} |
- dicom3tools | 23 | {imaging} |
- dcm2niix | 21 | {imaging} |
- gdcm | 21 | {imaging,covid-19} |
- gnumed-server | 18 | {covid-19,practice} |
- dicomscope | 17 | {imaging} |
+ gdcm | 38 | {imaging-dev} |
+ htsjdk | 35 | {bio-dev} |
+ dicom3tools | 24 | {imaging} |
+ dcm2niix | 22 | {imaging} |
+ gdcm | 20 | {imaging,covid-19} |
+ gnumed-server | 20 | {covid-19,practice} |
+ dicomscope | 18 | {imaging} |
adun.app | 16 | {bio} |
+ invesalius | 16 | {imaging} |
nifticlib | 16 | {imaging} |
dicomnifti | 15 | {imaging} |
- invesalius | 15 | {imaging} |
minc-tools | 15 | {imaging} |
ngs-sdk | 15 | {bio-dev} |
gdcm | 13 | {imaging-dev} |
- ngs-sdk | 11 | {bio-dev} |
+ ngs-sdk | 12 | {bio-dev} |
pixelmed | 11 | {imaging} |
+ plastimatch | 11 | {imaging} |
melting | 10 | {bio,cloud} |
openslide | 10 | {imaging} |
orthanc-webviewer | 10 | {imaging} |
- plastimatch | 10 | {imaging} |
biosig | 9 | {imaging,physics} |
ea-utils | 9 | {bio} |
+ librg-utils-perl | 9 | {bio} |
vtk-dicom | 9 | {imaging} |
fastlink | 8 | {bio,cloud} |
insighttoolkit4 | 8 | {imaging-dev} |
jebl2 | 8 | {bio-dev} |
king | 8 | {imaging,typesetting} |
- librg-utils-perl | 8 | {bio} |
ngs-sdk | 8 | {bio-dev} |
nifti2dicom | 8 | {imaging} |
orthanc-dicomweb | 8 | {imaging,covid-19} |
+ pymia | 8 | {imaging-dev} |
salmon | 8 | {covid-19,bio} |
+ staden | 8 | {bio} |
bamkit | 7 | {bio,covid-19} |
biojava-live | 7 | {bio-dev} |
+ libpal-java | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
- pymia | 7 | {imaging-dev} |
+ obitools | 7 | {bio} |
rambo-k | 7 | {bio} |
seqsero | 7 | {bio} |
- staden | 7 | {bio} |
treeview | 7 | {bio,bio-phylogeny} |
dicompyler | 6 | {oncology} |
libncl | 6 | {bio} |
- libpal-java | 6 | {bio-dev} |
- obitools | 6 | {bio} |
orthanc-mysql | 6 | {imaging} |
orthanc-postgresql | 6 | {imaging} |
+ phybin | 6 | {bio} |
+ phyutility | 6 | {cloud,bio} |
+ placnet | 6 | {bio} |
+ prime-phylo | 6 | {cloud,bio} |
+ prottest | 6 | {bio-phylogeny,bio} |
+ rdp-alignment | 6 | {bio} |
spread-phy | 6 | {bio-phylogeny,bio} |
arden | 5 | {bio,cloud} |
bart-view | 5 | {imaging} |
beast-mcmc | 5 | {bio,bio-phylogeny} |
+ bio-tradis | 5 | {bio,bio-dev} |
ecopcr | 5 | {bio} |
elastix | 5 | {imaging} |
embassy-domsearch | 5 | {bio,cloud} |
getdata | 5 | {bio} |
+ ghmm | 5 | {bio} |
ipig | 5 | {bio} |
jmodeltest | 5 | {bio-phylogeny,bio} |
+ lagan | 5 | {bio} |
libdivsufsort | 5 | {bio-dev} |
+ librdp-taxonomy-tree-java | 5 | {bio-dev} |
mauve-aligner | 5 | {bio} |
mipe | 5 | {cloud,bio} |
pbdagcon | 5 | {bio} |
- phybin | 5 | {bio} |
- phyutility | 5 | {cloud,bio} |
- placnet | 5 | {bio} |
- prime-phylo | 5 | {cloud,bio} |
- prottest | 5 | {bio-phylogeny,bio} |
- rdp-alignment | 5 | {bio} |
+ phast | 5 | {bio} |
+ piler | 5 | {bio} |
+ rdp-classifier | 5 | {bio} |
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
+ zalign | 5 | {bio,cloud} |
anfo | 4 | {cloud,bio} |
biomaj3-cli | 4 | {cloud} |
- bio-tradis | 4 | {bio,bio-dev} |
brig | 4 | {bio} |
embassy-domainatrix | 4 | {bio,cloud} |
embassy-domalign | 4 | {cloud,bio} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
- ghmm | 4 | {bio} |
jellyfish1 | 4 | {bio} |
- lagan | 4 | {bio} |
lamarc | 4 | {bio} |
libminc | 4 | {imaging-dev} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
libsbml | 4 | {bio-dev} |
logol | 4 | {bio} |
metaphlan2 | 4 | {bio} |
microbegps | 4 | {bio} |
+ multiqc | 4 | {covid-19,bio} |
perm | 4 | {cloud,bio} |
- phast | 4 | {bio} |
- piler | 4 | {bio} |
- rdp-classifier | 4 | {bio} |
+ proalign | 4 | {bio-phylogeny,bio} |
+ quorum | 4 | {bio} |
sga | 4 | {bio} |
sibsim4 | 4 | {cloud,bio} |
soapsnp | 4 | {bio} |
@@ -103,7 +107,6 @@ Last-Update: Sat, 12 Dec 2020 01:42:03 +0000
stacks | 4 | {bio} |
surankco | 4 | {bio} |
tracetuner | 4 | {bio} |
- zalign | 4 | {bio,cloud} |
assemblytics | 3 | {bio} |
biomaj3-daemon | 3 | {bio} |
bitseq | 3 | {bio} |
@@ -112,13 +115,13 @@ Last-Update: Sat, 12 Dec 2020 01:42:03 +0000
clonalframeml | 3 | {covid-19,bio} |
clonalorigin | 3 | {bio} |
dindel | 3 | {bio} |
+ estscan | 3 | {bio} |
hinge | 3 | {bio} |
mhap | 3 | {bio-ngs,bio} |
- multiqc | 3 | {covid-19,bio} |
oscar | 3 | {tools,practice,data} |
paraclu | 3 | {bio,cloud} |
- proalign | 3 | {bio-phylogeny,bio} |
- quorum | 3 | {bio} |
+ pscan-chip | 3 | {bio} |
+ qcumber | 3 | {bio} |
rtax | 3 | {cloud,bio} |
salmid | 3 | {bio} |
soapaligner | 3 | {bio} |
@@ -127,14 +130,12 @@ Last-Update: Sat, 12 Dec 2020 01:42:03 +0000
blasr | 2 | {bio,bio-ngs} |
delly | 2 | {bio,covid-19} |
emboss-explorer | 2 | {bio} |
- estscan | 2 | {bio} |
gatb-core | 2 | {bio} |
gifticlib | 2 | {imaging-dev} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libctapimkt | 2 | {practice} |
libmuscle | 2 | {bio-dev} |
- pscan-chip | 2 | {bio} |
- qcumber | 2 | {bio} |
+ plasmidseeker | 2 | {bio} |
samblaster | 2 | {bio,covid-19} |
segemehl | 2 | {bio} |
seqan | 2 | {bio-dev} |
@@ -176,8 +177,8 @@ Last-Update: Sat, 12 Dec 2020 01:42:03 +0000
papyrus | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
pbseqlib | 1 | {bio-dev} |
+ pigx-rnaseq | 1 | {covid-19,bio} |
plasmidid | 1 | {bio,covid-19} |
- plasmidseeker | 1 | {bio} |
q2templates | 1 | {bio-dev,bio} |
samtools-legacy | 1 | {bio-dev} |
seq-gen | 1 | {bio} |
@@ -216,7 +217,6 @@ Last-Update: Sat, 12 Dec 2020 01:42:03 +0000
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbseqlib | 0 | {bio-dev} |
- pigx-rnaseq | 0 | {covid-19,bio} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,bio,covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/81b2d9434101a856299524c6ec5d528d24e4eeed
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/81b2d9434101a856299524c6ec5d528d24e4eeed
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