Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
ba635bd7 by Andreas Tille at 2020-12-13T13:46:25+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,54 +1,53 @@
-Last-Update: Sun, 13 Dec 2020 01:42:04 +0000
+Last-Update: Sun, 13 Dec 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 196 | {imaging,covid-19} |
- orthanc | 105 | {imaging,covid-19,practice} |
+ orthanc | 104 | {imaging,covid-19,practice} |
orthanc-wsi | 55 | {covid-19,laboratory,practice,oncology,his,imaging} |
- gdcm | 38 | {imaging-dev} |
+ gdcm | 41 | {imaging-dev} |
htsjdk | 35 | {bio-dev} |
dicom3tools | 24 | {imaging} |
dcm2niix | 22 | {imaging} |
- gdcm | 20 | {imaging,covid-19} |
- gnumed-server | 20 | {covid-19,practice} |
+ gdcm | 19 | {imaging,covid-19} |
+ gnumed-server | 19 | {covid-19,practice} |
dicomscope | 18 | {imaging} |
- adun.app | 16 | {bio} |
invesalius | 16 | {imaging} |
- nifticlib | 16 | {imaging} |
- dicomnifti | 15 | {imaging} |
- minc-tools | 15 | {imaging} |
+ adun.app | 15 | {bio} |
ngs-sdk | 15 | {bio-dev} |
- gdcm | 13 | {imaging-dev} |
+ nifticlib | 15 | {imaging} |
+ dicomnifti | 14 | {imaging} |
+ minc-tools | 14 | {imaging} |
+ gdcm | 12 | {imaging-dev} |
ngs-sdk | 12 | {bio-dev} |
+ openslide | 11 | {imaging} |
pixelmed | 11 | {imaging} |
- plastimatch | 11 | {imaging} |
+ insighttoolkit4 | 10 | {imaging-dev} |
melting | 10 | {bio,cloud} |
- openslide | 10 | {imaging} |
orthanc-webviewer | 10 | {imaging} |
+ plastimatch | 10 | {imaging} |
biosig | 9 | {imaging,physics} |
ea-utils | 9 | {bio} |
librg-utils-perl | 9 | {bio} |
- vtk-dicom | 9 | {imaging} |
+ ngs-sdk | 9 | {bio-dev} |
fastlink | 8 | {bio,cloud} |
- insighttoolkit4 | 8 | {imaging-dev} |
jebl2 | 8 | {bio-dev} |
king | 8 | {imaging,typesetting} |
- ngs-sdk | 8 | {bio-dev} |
- nifti2dicom | 8 | {imaging} |
orthanc-dicomweb | 8 | {imaging,covid-19} |
pymia | 8 | {imaging-dev} |
salmon | 8 | {covid-19,bio} |
- staden | 8 | {bio} |
+ vtk-dicom | 8 | {imaging} |
bamkit | 7 | {bio,covid-19} |
- biojava-live | 7 | {bio-dev} |
libpal-java | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
obitools | 7 | {bio} |
rambo-k | 7 | {bio} |
seqsero | 7 | {bio} |
- treeview | 7 | {bio,bio-phylogeny} |
- dicompyler | 6 | {oncology} |
+ staden | 7 | {bio} |
+ beast-mcmc | 6 | {bio,bio-phylogeny} |
+ biojava-live | 6 | {bio-dev} |
libncl | 6 | {bio} |
+ nifti2dicom | 6 | {imaging} |
orthanc-mysql | 6 | {imaging} |
orthanc-postgresql | 6 | {imaging} |
phybin | 6 | {bio} |
@@ -57,15 +56,14 @@ Last-Update: Sun, 13 Dec 2020 01:42:04 +0000
prime-phylo | 6 | {cloud,bio} |
prottest | 6 | {bio-phylogeny,bio} |
rdp-alignment | 6 | {bio} |
- spread-phy | 6 | {bio-phylogeny,bio} |
+ treeview | 6 | {bio,bio-phylogeny} |
arden | 5 | {bio,cloud} |
bart-view | 5 | {imaging} |
- beast-mcmc | 5 | {bio,bio-phylogeny} |
bio-tradis | 5 | {bio,bio-dev} |
+ dicompyler | 5 | {oncology} |
ecopcr | 5 | {bio} |
elastix | 5 | {imaging} |
embassy-domsearch | 5 | {bio,cloud} |
- getdata | 5 | {bio} |
ghmm | 5 | {bio} |
ipig | 5 | {bio} |
jmodeltest | 5 | {bio-phylogeny,bio} |
@@ -74,12 +72,15 @@ Last-Update: Sun, 13 Dec 2020 01:42:04 +0000
librdp-taxonomy-tree-java | 5 | {bio-dev} |
mauve-aligner | 5 | {bio} |
mipe | 5 | {cloud,bio} |
+ multiqc | 5 | {covid-19,bio} |
pbdagcon | 5 | {bio} |
phast | 5 | {bio} |
piler | 5 | {bio} |
rdp-classifier | 5 | {bio} |
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
+ spread-phy | 5 | {bio-phylogeny,bio} |
+ stacks | 5 | {bio} |
zalign | 5 | {bio,cloud} |
anfo | 4 | {cloud,bio} |
biomaj3-cli | 4 | {cloud} |
@@ -88,14 +89,14 @@ Last-Update: Sun, 13 Dec 2020 01:42:04 +0000
embassy-domalign | 4 | {cloud,bio} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
+ getdata | 4 | {bio} |
jellyfish1 | 4 | {bio} |
lamarc | 4 | {bio} |
libminc | 4 | {imaging-dev} |
libsbml | 4 | {bio-dev} |
- logol | 4 | {bio} |
metaphlan2 | 4 | {bio} |
microbegps | 4 | {bio} |
- multiqc | 4 | {covid-19,bio} |
+ paraclu | 4 | {bio,cloud} |
perm | 4 | {cloud,bio} |
proalign | 4 | {bio-phylogeny,bio} |
quorum | 4 | {bio} |
@@ -104,7 +105,6 @@ Last-Update: Sun, 13 Dec 2020 01:42:04 +0000
soapsnp | 4 | {bio} |
spaced | 4 | {bio} |
sprai | 4 | {bio} |
- stacks | 4 | {bio} |
surankco | 4 | {bio} |
tracetuner | 4 | {bio} |
assemblytics | 3 | {bio} |
@@ -117,9 +117,9 @@ Last-Update: Sun, 13 Dec 2020 01:42:04 +0000
dindel | 3 | {bio} |
estscan | 3 | {bio} |
hinge | 3 | {bio} |
+ logol | 3 | {bio} |
mhap | 3 | {bio-ngs,bio} |
oscar | 3 | {tools,practice,data} |
- paraclu | 3 | {bio,cloud} |
pscan-chip | 3 | {bio} |
qcumber | 3 | {bio} |
rtax | 3 | {cloud,bio} |
@@ -129,7 +129,6 @@ Last-Update: Sun, 13 Dec 2020 01:42:04 +0000
biosig | 2 | {physics,imaging-dev} |
blasr | 2 | {bio,bio-ngs} |
delly | 2 | {bio,covid-19} |
- emboss-explorer | 2 | {bio} |
gatb-core | 2 | {bio} |
gifticlib | 2 | {imaging-dev} |
libbio-mage-utils-perl | 2 | {bio-dev} |
@@ -149,7 +148,7 @@ Last-Update: Sun, 13 Dec 2020 01:42:04 +0000
biosig | 1 | {imaging-dev,physics} |
blimps | 1 | {bio} |
ctn | 1 | {imaging-dev} |
- emmax | 1 | {bio} |
+ emboss-explorer | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
intake | 1 | {bio,bio-dev} |
libbpp-core | 1 | {bio-dev} |
@@ -179,9 +178,7 @@ Last-Update: Sun, 13 Dec 2020 01:42:04 +0000
pbseqlib | 1 | {bio-dev} |
pigx-rnaseq | 1 | {covid-19,bio} |
plasmidid | 1 | {bio,covid-19} |
- q2templates | 1 | {bio-dev,bio} |
samtools-legacy | 1 | {bio-dev} |
- seq-gen | 1 | {bio} |
sift | 1 | {bio} |
srf | 1 | {bio-dev} |
thesias | 1 | {bio,covid-19} |
@@ -196,6 +193,7 @@ Last-Update: Sun, 13 Dec 2020 01:42:04 +0000
cat-bat | 0 | {bio,covid-19} |
cufflinks | 0 | {cloud,bio} |
dextractor | 0 | {covid-19,bio} |
+ emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
htscodecs | 0 | {covid-19,bio-dev} |
kmerresistance | 0 | {bio} |
@@ -226,6 +224,7 @@ Last-Update: Sun, 13 Dec 2020 01:42:04 +0000
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
+ seq-gen | 0 | {bio} |
shovill | 0 | {bio,covid-19} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
@@ -245,5 +244,5 @@ Last-Update: Sun, 13 Dec 2020 01:42:04 +0000
q2-sample-classifier | -1 | {bio-dev,bio} |
sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
-(274 rows)
+(273 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ba635bd78b187ee63cefb353e001ce25b9142bac
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ba635bd78b187ee63cefb353e001ce25b9142bac
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