[med-svn] [Git][med-team/ivar][upstream] New upstream version 1.3+dfsg

[Étienne Mollier]

Étienne Mollier pushed to branch upstream at Debian Med / ivar


Commits:
3c322198 by Étienne Mollier at 2020-12-13T22:18:54+01:00
New upstream version 1.3+dfsg
- - - - -


30 changed files:

- configure.ac
- + data/pair_info_2.tsv
- + data/test_amplicon.sorted.bam
- + data/test_isize.bed
- + data/test_isize.sorted.bam
- docs/MANUAL.md
- src/Makefile.am
- + src/interval_tree.cpp
- + src/interval_tree.h
- src/ivar.cpp
- src/trim_primer_quality.cpp
- src/trim_primer_quality.h
- tests/Makefile.am
- tests/check_quality_trim.cpp
- tests/test_allele_depth.cpp
- + tests/test_amplicon_search.cpp
- tests/test_call_consensus_from_plup.cpp
- tests/test_common_variants.cpp
- tests/test_consensus_min_depth.cpp
- tests/test_consensus_seq_id.cpp
- tests/test_consensus_threshold.cpp
- tests/test_getmasked.cpp
- + tests/test_interval_tree.cpp
- + tests/test_isize_trim.cpp
- tests/test_primer_bed.cpp
- tests/test_primer_trim.cpp
- tests/test_primer_trim_edge_cases.cpp
- tests/test_ref_seq.cpp
- tests/test_removereads.cpp
- tests/test_trim.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ivar/-/commit/3c32219833232169942724a968ff17c9de81c683

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View it on GitLab: https://salsa.debian.org/med-team/ivar/-/commit/3c32219833232169942724a968ff17c9de81c683
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