Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
b5d4c58e by Andreas Tille at 2020-12-14T13:50:31+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,189 +1,163 @@
-Last-Update: Mon, 14 Dec 2020 01:42:04 +0000
+Last-Update: Mon, 14 Dec 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 196 | {imaging,covid-19} |
- orthanc | 104 | {imaging,covid-19,practice} |
- orthanc-wsi | 55 | {covid-19,laboratory,practice,oncology,his,imaging} |
- gdcm | 41 | {imaging-dev} |
- htsjdk | 35 | {bio-dev} |
- dicom3tools | 24 | {imaging} |
- dcm2niix | 22 | {imaging} |
- gdcm | 19 | {imaging,covid-19} |
- gnumed-server | 19 | {covid-19,practice} |
+ dcmtk | 192 | {imaging,covid-19} |
+ orthanc | 102 | {imaging,covid-19,practice} |
+ orthanc-wsi | 56 | {covid-19,laboratory,practice,oncology,his,imaging} |
+ gdcm | 42 | {imaging-dev} |
+ htsjdk | 34 | {bio-dev} |
+ dicom3tools | 23 | {imaging} |
+ dcm2niix | 21 | {imaging} |
+ gdcm | 20 | {imaging,covid-19} |
+ gnumed-server | 20 | {covid-19,practice} |
dicomscope | 18 | {imaging} |
- invesalius | 16 | {imaging} |
- adun.app | 15 | {bio} |
- ngs-sdk | 15 | {bio-dev} |
- nifticlib | 15 | {imaging} |
- dicomnifti | 14 | {imaging} |
- minc-tools | 14 | {imaging} |
+ invesalius | 15 | {imaging} |
+ adun.app | 14 | {bio} |
+ nifticlib | 14 | {imaging} |
+ dicomnifti | 13 | {imaging} |
+ ngs-sdk | 13 | {bio-dev} |
gdcm | 12 | {imaging-dev} |
- ngs-sdk | 12 | {bio-dev} |
- openslide | 11 | {imaging} |
+ minc-tools | 12 | {imaging} |
+ ngs-sdk | 11 | {bio-dev} |
pixelmed | 11 | {imaging} |
- insighttoolkit4 | 10 | {imaging-dev} |
- melting | 10 | {bio,cloud} |
- orthanc-webviewer | 10 | {imaging} |
- plastimatch | 10 | {imaging} |
- biosig | 9 | {imaging,physics} |
- ea-utils | 9 | {bio} |
- librg-utils-perl | 9 | {bio} |
- ngs-sdk | 9 | {bio-dev} |
- fastlink | 8 | {bio,cloud} |
- jebl2 | 8 | {bio-dev} |
- king | 8 | {imaging,typesetting} |
- orthanc-dicomweb | 8 | {imaging,covid-19} |
- pymia | 8 | {imaging-dev} |
- salmon | 8 | {covid-19,bio} |
+ openslide | 10 | {imaging} |
+ melting | 9 | {bio,cloud} |
+ orthanc-webviewer | 9 | {imaging} |
+ plastimatch | 9 | {imaging} |
+ biosig | 8 | {imaging,physics} |
+ ea-utils | 8 | {bio} |
+ insighttoolkit4 | 8 | {imaging-dev} |
+ librg-utils-perl | 8 | {bio} |
vtk-dicom | 8 | {imaging} |
bamkit | 7 | {bio,covid-19} |
- libpal-java | 7 | {bio-dev} |
- nifti2dicom | 7 | {imaging} |
+ fastlink | 7 | {bio,cloud} |
+ jebl2 | 7 | {bio-dev} |
+ king | 7 | {imaging,typesetting} |
+ ngs-sdk | 7 | {bio-dev} |
obitools | 7 | {bio} |
- rambo-k | 7 | {bio} |
- seqsero | 7 | {bio} |
- staden | 7 | {bio} |
- beast-mcmc | 6 | {bio,bio-phylogeny} |
- biojava-live | 6 | {bio-dev} |
- libncl | 6 | {bio} |
+ orthanc-dicomweb | 7 | {imaging,covid-19} |
+ pymia | 7 | {imaging-dev} |
+ salmon | 7 | {covid-19,bio} |
+ libpal-java | 6 | {bio-dev} |
nifti2dicom | 6 | {imaging} |
- orthanc-mysql | 6 | {imaging} |
- orthanc-postgresql | 6 | {imaging} |
- phybin | 6 | {bio} |
- phyutility | 6 | {cloud,bio} |
- placnet | 6 | {bio} |
- prime-phylo | 6 | {cloud,bio} |
- prottest | 6 | {bio-phylogeny,bio} |
- rdp-alignment | 6 | {bio} |
- treeview | 6 | {bio,bio-phylogeny} |
- arden | 5 | {bio,cloud} |
- bart-view | 5 | {imaging} |
- bio-tradis | 5 | {bio,bio-dev} |
- dicompyler | 5 | {oncology} |
- ecopcr | 5 | {bio} |
- elastix | 5 | {imaging} |
- embassy-domsearch | 5 | {bio,cloud} |
- ghmm | 5 | {bio} |
+ rambo-k | 6 | {bio} |
+ seqsero | 6 | {bio} |
+ beast-mcmc | 5 | {bio,bio-phylogeny} |
+ biojava-live | 5 | {bio-dev} |
ipig | 5 | {bio} |
- jmodeltest | 5 | {bio-phylogeny,bio} |
- lagan | 5 | {bio} |
- libdivsufsort | 5 | {bio-dev} |
- librdp-taxonomy-tree-java | 5 | {bio-dev} |
- mauve-aligner | 5 | {bio} |
- mipe | 5 | {cloud,bio} |
+ libncl | 5 | {bio} |
multiqc | 5 | {covid-19,bio} |
- pbdagcon | 5 | {bio} |
- phast | 5 | {bio} |
- piler | 5 | {bio} |
- rdp-classifier | 5 | {bio} |
- runcircos-gui | 5 | {bio} |
- saint | 5 | {bio} |
- spread-phy | 5 | {bio-phylogeny,bio} |
- stacks | 5 | {bio} |
- zalign | 5 | {bio,cloud} |
- anfo | 4 | {cloud,bio} |
- biomaj3-cli | 4 | {cloud} |
- brig | 4 | {bio} |
- embassy-domainatrix | 4 | {bio,cloud} |
- embassy-domalign | 4 | {cloud,bio} |
- fastml | 4 | {bio} |
- fsm-lite | 4 | {bio} |
- getdata | 4 | {bio} |
- jellyfish1 | 4 | {bio} |
- lamarc | 4 | {bio} |
+ nifti2dicom | 5 | {imaging} |
+ orthanc-mysql | 5 | {imaging} |
+ orthanc-postgresql | 5 | {imaging} |
+ phybin | 5 | {bio} |
+ phyutility | 5 | {cloud,bio} |
+ placnet | 5 | {bio} |
+ prime-phylo | 5 | {cloud,bio} |
+ prottest | 5 | {bio-phylogeny,bio} |
+ rdp-alignment | 5 | {bio} |
+ staden | 5 | {bio} |
+ treeview | 5 | {bio,bio-phylogeny} |
+ arden | 4 | {bio,cloud} |
+ bart-view | 4 | {imaging} |
+ bio-tradis | 4 | {bio,bio-dev} |
+ busco | 4 | {bio,covid-19} |
+ dicompyler | 4 | {oncology} |
+ ecopcr | 4 | {bio} |
+ elastix | 4 | {imaging} |
+ embassy-domsearch | 4 | {bio,cloud} |
+ ghmm | 4 | {bio} |
+ jmodeltest | 4 | {bio-phylogeny,bio} |
+ lagan | 4 | {bio} |
+ libdivsufsort | 4 | {bio-dev} |
libminc | 4 | {imaging-dev} |
- libsbml | 4 | {bio-dev} |
- metaphlan2 | 4 | {bio} |
- microbegps | 4 | {bio} |
- paraclu | 4 | {bio,cloud} |
- perm | 4 | {cloud,bio} |
- proalign | 4 | {bio-phylogeny,bio} |
- quorum | 4 | {bio} |
- sga | 4 | {bio} |
- sibsim4 | 4 | {cloud,bio} |
- soapsnp | 4 | {bio} |
- spaced | 4 | {bio} |
- sprai | 4 | {bio} |
- surankco | 4 | {bio} |
- tracetuner | 4 | {bio} |
- assemblytics | 3 | {bio} |
- biomaj3-daemon | 3 | {bio} |
- bitseq | 3 | {bio} |
- busco | 3 | {bio,covid-19} |
- canu | 3 | {bio} |
- clonalframeml | 3 | {covid-19,bio} |
- clonalorigin | 3 | {bio} |
- dindel | 3 | {bio} |
- estscan | 3 | {bio} |
- hinge | 3 | {bio} |
- logol | 3 | {bio} |
- mhap | 3 | {bio-ngs,bio} |
+ librdp-taxonomy-tree-java | 4 | {bio-dev} |
+ mauve-aligner | 4 | {bio} |
+ mipe | 4 | {cloud,bio} |
+ pbdagcon | 4 | {bio} |
+ phast | 4 | {bio} |
+ piler | 4 | {bio} |
+ rdp-classifier | 4 | {bio} |
+ runcircos-gui | 4 | {bio} |
+ saint | 4 | {bio} |
+ spread-phy | 4 | {bio-phylogeny,bio} |
+ stacks | 4 | {bio} |
+ zalign | 4 | {bio,cloud} |
+ anfo | 3 | {cloud,bio} |
+ biomaj3-cli | 3 | {cloud} |
+ brig | 3 | {bio} |
+ embassy-domainatrix | 3 | {bio,cloud} |
+ embassy-domalign | 3 | {cloud,bio} |
+ fastml | 3 | {bio} |
+ fsm-lite | 3 | {bio} |
+ getdata | 3 | {bio} |
+ jellyfish1 | 3 | {bio} |
+ lamarc | 3 | {bio} |
+ libsbml | 3 | {bio-dev} |
+ metaphlan2 | 3 | {bio} |
+ microbegps | 3 | {bio} |
oscar | 3 | {tools,practice,data} |
- pscan-chip | 3 | {bio} |
- qcumber | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
- salmid | 3 | {bio} |
- soapaligner | 3 | {bio} |
- suitename | 3 | {bio} |
- biosig | 2 | {physics,imaging-dev} |
- blasr | 2 | {bio,bio-ngs} |
- delly | 2 | {bio,covid-19} |
- gatb-core | 2 | {bio} |
+ perm | 3 | {cloud,bio} |
+ proalign | 3 | {bio-phylogeny,bio} |
+ quorum | 3 | {bio} |
+ sga | 3 | {bio} |
+ sibsim4 | 3 | {cloud,bio} |
+ soapsnp | 3 | {bio} |
+ spaced | 3 | {bio} |
+ sprai | 3 | {bio} |
+ surankco | 3 | {bio} |
+ tracetuner | 3 | {bio} |
+ assemblytics | 2 | {bio} |
+ biomaj3-daemon | 2 | {bio} |
+ bitseq | 2 | {bio} |
+ blimps | 2 | {bio} |
+ canu | 2 | {bio} |
+ clonalframeml | 2 | {covid-19,bio} |
+ clonalorigin | 2 | {bio} |
+ dindel | 2 | {bio} |
+ estscan | 2 | {bio} |
gifticlib | 2 | {imaging-dev} |
- libbio-mage-utils-perl | 2 | {bio-dev} |
+ hinge | 2 | {bio} |
libctapimkt | 2 | {practice} |
- libmuscle | 2 | {bio-dev} |
- plasmidseeker | 2 | {bio} |
- samblaster | 2 | {bio,covid-19} |
- segemehl | 2 | {bio} |
- seqan | 2 | {bio-dev} |
+ logol | 2 | {bio} |
+ mhap | 2 | {bio-ngs,bio} |
+ paraclu | 2 | {bio,cloud} |
+ pscan-chip | 2 | {bio} |
+ qcumber | 2 | {bio} |
+ rtax | 2 | {cloud,bio} |
+ salmid | 2 | {bio} |
+ sift | 2 | {bio} |
sight | 2 | {imaging} |
- simpleitk | 2 | {imaging-dev} |
- tvc | 2 | {bio} |
- yaha | 2 | {bio} |
+ soapaligner | 2 | {bio} |
+ suitename | 2 | {bio} |
acedb | 1 | {cloud,bio} |
- bambamc | 1 | {bio-dev} |
- bbmap | 1 | {covid-19,bio} |
biosig | 1 | {imaging-dev,physics} |
- blimps | 1 | {bio} |
- ctn | 1 | {imaging-dev} |
- emboss-explorer | 1 | {bio} |
- gatb-core | 1 | {bio-dev} |
+ biosig | 1 | {physics,imaging-dev} |
+ blasr | 1 | {bio,bio-ngs} |
+ delly | 1 | {bio,covid-19} |
+ gatb-core | 1 | {bio} |
intake | 1 | {bio,bio-dev} |
- libbpp-core | 1 | {bio-dev} |
- libbpp-phyl | 1 | {bio-dev} |
- libbpp-phyl-omics | 1 | {bio-dev} |
- libbpp-popgen | 1 | {bio-dev} |
- libbpp-raa | 1 | {bio-dev} |
- libbpp-seq | 1 | {bio-dev} |
- libbpp-seq-omics | 1 | {bio-dev} |
- libchado-perl | 1 | {bio-dev} |
- libdisorder | 1 | {bio-dev} |
- libgenome | 1 | {bio-dev} |
- libgkarrays | 1 | {bio-dev} |
- libhmsbeagle | 1 | {bio-dev} |
- libmems | 1 | {bio-dev} |
- libncl | 1 | {bio-dev} |
- libqes | 1 | {bio-dev} |
- libseqlib | 1 | {bio-dev} |
- libstatgen | 1 | {bio-dev} |
+ libbio-mage-utils-perl | 1 | {bio-dev} |
+ libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
- ncbi-vdb | 1 | {bio-dev} |
- opencfu | 1 | {laboratory} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
- pbseqlib | 1 | {bio-dev} |
pigx-rnaseq | 1 | {covid-19,bio} |
plasmidid | 1 | {bio,covid-19} |
+ plasmidseeker | 1 | {bio} |
+ samblaster | 1 | {bio,covid-19} |
samtools-legacy | 1 | {bio-dev} |
- sift | 1 | {bio} |
- srf | 1 | {bio-dev} |
- thesias | 1 | {bio,covid-19} |
- trace2dbest | 1 | {bio} |
+ segemehl | 1 | {bio} |
+ seqan | 1 | {bio-dev} |
+ simpleitk | 1 | {imaging-dev} |
+ tvc | 1 | {bio} |
+ yaha | 1 | {bio} |
atropos | 0 | {bio} |
+ bambamc | 0 | {bio-dev} |
+ bbmap | 0 | {covid-19,bio} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
@@ -191,27 +165,49 @@ Last-Update: Mon, 14 Dec 2020 01:42:04 +0000
bustools | 0 | {covid-19,bio} |
camp | 0 | {imaging-dev} |
cat-bat | 0 | {bio,covid-19} |
+ ctn | 0 | {imaging-dev} |
cufflinks | 0 | {cloud,bio} |
dextractor | 0 | {covid-19,bio} |
+ emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
+ gatb-core | 0 | {bio-dev} |
htscodecs | 0 | {covid-19,bio-dev} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
+ libbpp-core | 0 | {bio-dev} |
+ libbpp-phyl | 0 | {bio-dev} |
+ libbpp-phyl-omics | 0 | {bio-dev} |
+ libbpp-popgen | 0 | {bio-dev} |
+ libbpp-raa | 0 | {bio-dev} |
+ libbpp-seq | 0 | {bio-dev} |
+ libbpp-seq-omics | 0 | {bio-dev} |
+ libchado-perl | 0 | {bio-dev} |
+ libdisorder | 0 | {bio-dev} |
+ libgenome | 0 | {bio-dev} |
+ libgkarrays | 0 | {bio-dev} |
+ libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {bio-dev,covid-19} |
+ libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
+ libncl | 0 | {bio-dev} |
libpsortb | 0 | {bio-dev} |
+ libqes | 0 | {bio-dev} |
+ libseqlib | 0 | {bio-dev} |
+ libstatgen | 0 | {bio-dev} |
libxdf | 0 | {imaging-dev} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
nanosv | 0 | {covid-19,bio} |
+ ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
+ opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbseqlib | 0 | {bio-dev} |
@@ -219,8 +215,8 @@ Last-Update: Mon, 14 Dec 2020 01:42:04 +0000
pique | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -232,7 +228,10 @@ Last-Update: Mon, 14 Dec 2020 01:42:04 +0000
skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
spaln | 0 | {covid-19,bio} |
+ srf | 0 | {bio-dev} |
+ thesias | 0 | {bio,covid-19} |
tophat-recondition | 0 | {bio,covid-19} |
+ trace2dbest | 0 | {bio} |
varna | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
vienna-rna | 0 | {covid-19,bio} |
@@ -244,5 +243,5 @@ Last-Update: Mon, 14 Dec 2020 01:42:04 +0000
q2-sample-classifier | -1 | {bio-dev,bio} |
sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
-(273 rows)
+(272 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b5d4c58e8ba517eb186c1a57ae4cce87adabc077
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b5d4c58e8ba517eb186c1a57ae4cce87adabc077
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20201214/febd7dfd/attachment-0001.html>