Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
9972ec26 by Andreas Tille at 2020-12-15T13:46:02+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,160 +1,163 @@
-Last-Update: Tue, 15 Dec 2020 01:42:04 +0000
+Last-Update: Tue, 15 Dec 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 192 | {imaging,covid-19} |
- orthanc | 102 | {imaging,covid-19,practice} |
+ dcmtk | 190 | {imaging,covid-19} |
+ orthanc | 100 | {imaging,covid-19,practice} |
orthanc-wsi | 56 | {covid-19,laboratory,practice,oncology,his,imaging} |
gdcm | 42 | {imaging-dev} |
- htsjdk | 34 | {bio-dev} |
+ htsjdk | 35 | {bio-dev} |
+ amide | 27 | {imaging} |
dicom3tools | 23 | {imaging} |
dcm2niix | 21 | {imaging} |
- gdcm | 20 | {imaging,covid-19} |
gnumed-server | 20 | {covid-19,practice} |
- dicomscope | 18 | {imaging} |
+ dicomscope | 19 | {imaging} |
+ gdcm | 19 | {imaging,covid-19} |
+ adun.app | 15 | {bio} |
invesalius | 15 | {imaging} |
- adun.app | 14 | {bio} |
- nifticlib | 14 | {imaging} |
- dicomnifti | 13 | {imaging} |
- ngs-sdk | 13 | {bio-dev} |
+ ngs-sdk | 15 | {bio-dev} |
+ nifticlib | 15 | {imaging} |
+ dicomnifti | 14 | {imaging} |
+ minc-tools | 13 | {imaging} |
gdcm | 12 | {imaging-dev} |
- minc-tools | 12 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
pixelmed | 11 | {imaging} |
- openslide | 10 | {imaging} |
- melting | 9 | {bio,cloud} |
+ melting | 10 | {bio,cloud} |
+ plastimatch | 10 | {imaging} |
+ vtk-dicom | 10 | {imaging} |
+ biosig | 9 | {imaging,physics} |
+ ea-utils | 9 | {bio} |
+ king | 9 | {imaging,typesetting} |
+ librg-utils-perl | 9 | {bio} |
+ openslide | 9 | {imaging} |
orthanc-webviewer | 9 | {imaging} |
- plastimatch | 9 | {imaging} |
- biosig | 8 | {imaging,physics} |
- ea-utils | 8 | {bio} |
+ fastlink | 8 | {bio,cloud} |
insighttoolkit4 | 8 | {imaging-dev} |
- librg-utils-perl | 8 | {bio} |
- vtk-dicom | 8 | {imaging} |
+ jebl2 | 8 | {bio-dev} |
+ ngs-sdk | 8 | {bio-dev} |
+ obitools | 8 | {bio} |
+ salmon | 8 | {covid-19,bio} |
bamkit | 7 | {bio,covid-19} |
- fastlink | 7 | {bio,cloud} |
- jebl2 | 7 | {bio-dev} |
- king | 7 | {imaging,typesetting} |
- ngs-sdk | 7 | {bio-dev} |
- obitools | 7 | {bio} |
+ libpal-java | 7 | {bio-dev} |
+ nifti2dicom | 7 | {imaging} |
orthanc-dicomweb | 7 | {imaging,covid-19} |
pymia | 7 | {imaging-dev} |
- salmon | 7 | {covid-19,bio} |
- libpal-java | 6 | {bio-dev} |
+ rambo-k | 7 | {bio} |
+ seqsero | 7 | {bio} |
+ treeview | 7 | {bio,bio-phylogeny} |
+ beast-mcmc | 6 | {bio,bio-phylogeny} |
+ biojava-live | 6 | {bio-dev} |
+ libncl | 6 | {bio} |
nifti2dicom | 6 | {imaging} |
- rambo-k | 6 | {bio} |
- seqsero | 6 | {bio} |
- beast-mcmc | 5 | {bio,bio-phylogeny} |
- biojava-live | 5 | {bio-dev} |
+ phybin | 6 | {bio} |
+ phyutility | 6 | {cloud,bio} |
+ piler | 6 | {bio} |
+ placnet | 6 | {bio} |
+ prime-phylo | 6 | {cloud,bio} |
+ prottest | 6 | {bio-phylogeny,bio} |
+ rdp-alignment | 6 | {bio} |
+ staden | 6 | {bio} |
+ arden | 5 | {bio,cloud} |
+ bio-tradis | 5 | {bio,bio-dev} |
+ dicompyler | 5 | {oncology} |
+ ecopcr | 5 | {bio} |
+ embassy-domalign | 5 | {cloud,bio} |
+ embassy-domsearch | 5 | {bio,cloud} |
+ ghmm | 5 | {bio} |
ipig | 5 | {bio} |
- libncl | 5 | {bio} |
- multiqc | 5 | {covid-19,bio} |
- nifti2dicom | 5 | {imaging} |
+ jmodeltest | 5 | {bio-phylogeny,bio} |
+ lagan | 5 | {bio} |
+ librdp-taxonomy-tree-java | 5 | {bio-dev} |
+ mauve-aligner | 5 | {bio} |
+ mipe | 5 | {cloud,bio} |
orthanc-mysql | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
- phybin | 5 | {bio} |
- phyutility | 5 | {cloud,bio} |
- placnet | 5 | {bio} |
- prime-phylo | 5 | {cloud,bio} |
- prottest | 5 | {bio-phylogeny,bio} |
- rdp-alignment | 5 | {bio} |
- staden | 5 | {bio} |
- treeview | 5 | {bio,bio-phylogeny} |
- arden | 4 | {bio,cloud} |
+ pbdagcon | 5 | {bio} |
+ phast | 5 | {bio} |
+ rdp-classifier | 5 | {bio} |
+ runcircos-gui | 5 | {bio} |
+ saint | 5 | {bio} |
+ spread-phy | 5 | {bio-phylogeny,bio} |
+ stacks | 5 | {bio} |
+ zalign | 5 | {bio,cloud} |
+ anfo | 4 | {cloud,bio} |
bart-view | 4 | {imaging} |
- bio-tradis | 4 | {bio,bio-dev} |
+ brig | 4 | {bio} |
busco | 4 | {bio,covid-19} |
- dicompyler | 4 | {oncology} |
- ecopcr | 4 | {bio} |
elastix | 4 | {imaging} |
- embassy-domsearch | 4 | {bio,cloud} |
- ghmm | 4 | {bio} |
- jmodeltest | 4 | {bio-phylogeny,bio} |
- lagan | 4 | {bio} |
+ embassy-domainatrix | 4 | {bio,cloud} |
+ fastml | 4 | {bio} |
+ fsm-lite | 4 | {bio} |
+ jellyfish1 | 4 | {bio} |
+ lamarc | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
libminc | 4 | {imaging-dev} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
- mauve-aligner | 4 | {bio} |
- mipe | 4 | {cloud,bio} |
- pbdagcon | 4 | {bio} |
- phast | 4 | {bio} |
- piler | 4 | {bio} |
- rdp-classifier | 4 | {bio} |
- runcircos-gui | 4 | {bio} |
- saint | 4 | {bio} |
- spread-phy | 4 | {bio-phylogeny,bio} |
- stacks | 4 | {bio} |
- zalign | 4 | {bio,cloud} |
- anfo | 3 | {cloud,bio} |
+ metaphlan2 | 4 | {bio} |
+ microbegps | 4 | {bio} |
+ multiqc | 4 | {covid-19,bio} |
+ perm | 4 | {cloud,bio} |
+ proalign | 4 | {bio-phylogeny,bio} |
+ quorum | 4 | {bio} |
+ sga | 4 | {bio} |
+ sibsim4 | 4 | {cloud,bio} |
+ soapsnp | 4 | {bio} |
+ spaced | 4 | {bio} |
+ sprai | 4 | {bio} |
+ surankco | 4 | {bio} |
+ tracetuner | 4 | {bio} |
+ assemblytics | 3 | {bio} |
biomaj3-cli | 3 | {cloud} |
- brig | 3 | {bio} |
- embassy-domainatrix | 3 | {bio,cloud} |
- embassy-domalign | 3 | {cloud,bio} |
- fastml | 3 | {bio} |
- fsm-lite | 3 | {bio} |
+ bitseq | 3 | {bio} |
+ canu | 3 | {bio} |
+ clonalframeml | 3 | {covid-19,bio} |
+ clonalorigin | 3 | {bio} |
+ dindel | 3 | {bio} |
+ estscan | 3 | {bio} |
getdata | 3 | {bio} |
- jellyfish1 | 3 | {bio} |
- lamarc | 3 | {bio} |
- libsbml | 3 | {bio-dev} |
- metaphlan2 | 3 | {bio} |
- microbegps | 3 | {bio} |
+ hinge | 3 | {bio} |
+ logol | 3 | {bio} |
+ mhap | 3 | {bio-ngs,bio} |
oscar | 3 | {tools,practice,data} |
- perm | 3 | {cloud,bio} |
- proalign | 3 | {bio-phylogeny,bio} |
- quorum | 3 | {bio} |
- sga | 3 | {bio} |
- sibsim4 | 3 | {cloud,bio} |
- soapsnp | 3 | {bio} |
- spaced | 3 | {bio} |
- sprai | 3 | {bio} |
- surankco | 3 | {bio} |
- tracetuner | 3 | {bio} |
- assemblytics | 2 | {bio} |
+ paraclu | 3 | {bio,cloud} |
+ pscan-chip | 3 | {bio} |
+ qcumber | 3 | {bio} |
+ rtax | 3 | {cloud,bio} |
+ soapaligner | 3 | {bio} |
+ suitename | 3 | {bio} |
biomaj3-daemon | 2 | {bio} |
- bitseq | 2 | {bio} |
+ blasr | 2 | {bio,bio-ngs} |
blimps | 2 | {bio} |
- canu | 2 | {bio} |
- clonalframeml | 2 | {covid-19,bio} |
- clonalorigin | 2 | {bio} |
- dindel | 2 | {bio} |
- estscan | 2 | {bio} |
+ delly | 2 | {bio,covid-19} |
+ gatb-core | 2 | {bio} |
gifticlib | 2 | {imaging-dev} |
- hinge | 2 | {bio} |
libctapimkt | 2 | {practice} |
- logol | 2 | {bio} |
- mhap | 2 | {bio-ngs,bio} |
- paraclu | 2 | {bio,cloud} |
- pscan-chip | 2 | {bio} |
- qcumber | 2 | {bio} |
- rtax | 2 | {cloud,bio} |
+ libsbml | 2 | {bio-dev} |
+ plasmidseeker | 2 | {bio} |
salmid | 2 | {bio} |
+ samblaster | 2 | {bio,covid-19} |
+ segemehl | 2 | {bio} |
sift | 2 | {bio} |
sight | 2 | {imaging} |
- soapaligner | 2 | {bio} |
- suitename | 2 | {bio} |
+ tvc | 2 | {bio} |
+ yaha | 2 | {bio} |
acedb | 1 | {cloud,bio} |
- biosig | 1 | {imaging-dev,physics} |
biosig | 1 | {physics,imaging-dev} |
- blasr | 1 | {bio,bio-ngs} |
- delly | 1 | {bio,covid-19} |
- gatb-core | 1 | {bio} |
+ biosig | 1 | {imaging-dev,physics} |
intake | 1 | {bio,bio-dev} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
+ opencfu | 1 | {laboratory} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
pigx-rnaseq | 1 | {covid-19,bio} |
plasmidid | 1 | {bio,covid-19} |
- plasmidseeker | 1 | {bio} |
- samblaster | 1 | {bio,covid-19} |
samtools-legacy | 1 | {bio-dev} |
- segemehl | 1 | {bio} |
seqan | 1 | {bio-dev} |
simpleitk | 1 | {imaging-dev} |
- tvc | 1 | {bio} |
- yaha | 1 | {bio} |
+ trace2dbest | 1 | {bio} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19,bio} |
@@ -207,7 +210,6 @@ Last-Update: Tue, 15 Dec 2020 01:42:04 +0000
nanosv | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
- opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
pbseqlib | 0 | {bio-dev} |
@@ -215,8 +217,8 @@ Last-Update: Tue, 15 Dec 2020 01:42:04 +0000
pique | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -231,7 +233,6 @@ Last-Update: Tue, 15 Dec 2020 01:42:04 +0000
srf | 0 | {bio-dev} |
thesias | 0 | {bio,covid-19} |
tophat-recondition | 0 | {bio,covid-19} |
- trace2dbest | 0 | {bio} |
varna | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
vienna-rna | 0 | {covid-19,bio} |
@@ -243,5 +244,5 @@ Last-Update: Tue, 15 Dec 2020 01:42:04 +0000
q2-sample-classifier | -1 | {bio-dev,bio} |
sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
-(272 rows)
+(273 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9972ec26ff0aba86580fa79150385a3f5627e77b
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9972ec26ff0aba86580fa79150385a3f5627e77b
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