Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
3316534d by Andreas Tille at 2020-12-16T13:45:54+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,43 +1,44 @@
-Last-Update: Wed, 16 Dec 2020 01:42:03 +0000
+Last-Update: Wed, 16 Dec 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 190 | {imaging,covid-19} |
- orthanc | 100 | {imaging,covid-19,practice} |
- orthanc-wsi | 56 | {covid-19,laboratory,practice,oncology,his,imaging} |
- gdcm | 42 | {imaging-dev} |
+ dcmtk | 193 | {imaging,covid-19} |
+ orthanc | 102 | {imaging,covid-19,practice} |
+ orthanc-wsi | 55 | {covid-19,laboratory,practice,oncology,his,imaging} |
+ gdcm | 43 | {imaging-dev} |
htsjdk | 35 | {bio-dev} |
- amide | 27 | {imaging} |
+ amide | 28 | {imaging} |
dicom3tools | 23 | {imaging} |
dcm2niix | 21 | {imaging} |
- gnumed-server | 20 | {covid-19,practice} |
dicomscope | 19 | {imaging} |
gdcm | 19 | {imaging,covid-19} |
+ gnumed-server | 18 | {covid-19,practice} |
+ ngs-sdk | 16 | {bio-dev} |
adun.app | 15 | {bio} |
invesalius | 15 | {imaging} |
- ngs-sdk | 15 | {bio-dev} |
nifticlib | 15 | {imaging} |
dicomnifti | 14 | {imaging} |
minc-tools | 13 | {imaging} |
gdcm | 12 | {imaging-dev} |
+ melting | 11 | {bio,cloud} |
ngs-sdk | 11 | {bio-dev} |
pixelmed | 11 | {imaging} |
- melting | 10 | {bio,cloud} |
+ librg-utils-perl | 10 | {bio} |
plastimatch | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
biosig | 9 | {imaging,physics} |
ea-utils | 9 | {bio} |
king | 9 | {imaging,typesetting} |
- librg-utils-perl | 9 | {bio} |
+ mia | 9 | {imaging} |
openslide | 9 | {imaging} |
orthanc-webviewer | 9 | {imaging} |
+ bamkit | 8 | {bio,covid-19} |
fastlink | 8 | {bio,cloud} |
insighttoolkit4 | 8 | {imaging-dev} |
jebl2 | 8 | {bio-dev} |
ngs-sdk | 8 | {bio-dev} |
obitools | 8 | {bio} |
salmon | 8 | {covid-19,bio} |
- bamkit | 7 | {bio,covid-19} |
libpal-java | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
orthanc-dicomweb | 7 | {imaging,covid-19} |
@@ -51,7 +52,6 @@ Last-Update: Wed, 16 Dec 2020 01:42:03 +0000
nifti2dicom | 6 | {imaging} |
phybin | 6 | {bio} |
phyutility | 6 | {cloud,bio} |
- piler | 6 | {bio} |
placnet | 6 | {bio} |
prime-phylo | 6 | {cloud,bio} |
prottest | 6 | {bio-phylogeny,bio} |
@@ -67,18 +67,20 @@ Last-Update: Wed, 16 Dec 2020 01:42:03 +0000
ipig | 5 | {bio} |
jmodeltest | 5 | {bio-phylogeny,bio} |
lagan | 5 | {bio} |
+ libdivsufsort | 5 | {bio-dev} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
mauve-aligner | 5 | {bio} |
mipe | 5 | {cloud,bio} |
+ multiqc | 5 | {covid-19,bio} |
orthanc-mysql | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
pbdagcon | 5 | {bio} |
phast | 5 | {bio} |
+ piler | 5 | {bio} |
rdp-classifier | 5 | {bio} |
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
spread-phy | 5 | {bio-phylogeny,bio} |
- stacks | 5 | {bio} |
zalign | 5 | {bio,cloud} |
anfo | 4 | {cloud,bio} |
bart-view | 4 | {imaging} |
@@ -90,11 +92,9 @@ Last-Update: Wed, 16 Dec 2020 01:42:03 +0000
fsm-lite | 4 | {bio} |
jellyfish1 | 4 | {bio} |
lamarc | 4 | {bio} |
- libdivsufsort | 4 | {bio-dev} |
libminc | 4 | {imaging-dev} |
metaphlan2 | 4 | {bio} |
microbegps | 4 | {bio} |
- multiqc | 4 | {covid-19,bio} |
perm | 4 | {cloud,bio} |
proalign | 4 | {bio-phylogeny,bio} |
quorum | 4 | {bio} |
@@ -103,6 +103,7 @@ Last-Update: Wed, 16 Dec 2020 01:42:03 +0000
soapsnp | 4 | {bio} |
spaced | 4 | {bio} |
sprai | 4 | {bio} |
+ stacks | 4 | {bio} |
surankco | 4 | {bio} |
tracetuner | 4 | {bio} |
assemblytics | 3 | {bio} |
@@ -122,6 +123,7 @@ Last-Update: Wed, 16 Dec 2020 01:42:03 +0000
pscan-chip | 3 | {bio} |
qcumber | 3 | {bio} |
rtax | 3 | {cloud,bio} |
+ sight | 3 | {imaging} |
soapaligner | 3 | {bio} |
suitename | 3 | {bio} |
biomaj3-daemon | 2 | {bio} |
@@ -129,22 +131,22 @@ Last-Update: Wed, 16 Dec 2020 01:42:03 +0000
blimps | 2 | {bio} |
delly | 2 | {bio,covid-19} |
gatb-core | 2 | {bio} |
- gifticlib | 2 | {imaging-dev} |
libctapimkt | 2 | {practice} |
libsbml | 2 | {bio-dev} |
plasmidseeker | 2 | {bio} |
salmid | 2 | {bio} |
samblaster | 2 | {bio,covid-19} |
+ samtools-legacy | 2 | {bio-dev} |
segemehl | 2 | {bio} |
sift | 2 | {bio} |
- sight | 2 | {imaging} |
tvc | 2 | {bio} |
yaha | 2 | {bio} |
acedb | 1 | {cloud,bio} |
- biosig | 1 | {physics,imaging-dev} |
biosig | 1 | {imaging-dev,physics} |
+ biosig | 1 | {physics,imaging-dev} |
+ gifticlib | 1 | {imaging-dev} |
+ htscodecs | 1 | {covid-19,bio-dev} |
intake | 1 | {bio,bio-dev} |
- libbio-mage-utils-perl | 1 | {bio-dev} |
libmuscle | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
opencfu | 1 | {laboratory} |
@@ -154,7 +156,6 @@ Last-Update: Wed, 16 Dec 2020 01:42:03 +0000
pbcopper | 1 | {bio-dev} |
pigx-rnaseq | 1 | {covid-19,bio} |
plasmidid | 1 | {bio,covid-19} |
- samtools-legacy | 1 | {bio-dev} |
seqan | 1 | {bio-dev} |
simpleitk | 1 | {imaging-dev} |
trace2dbest | 1 | {bio} |
@@ -175,10 +176,10 @@ Last-Update: Wed, 16 Dec 2020 01:42:03 +0000
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
- htscodecs | 0 | {covid-19,bio-dev} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
+ libbio-mage-utils-perl | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libbpp-core | 0 | {bio-dev} |
libbpp-phyl | 0 | {bio-dev} |
@@ -205,6 +206,7 @@ Last-Update: Wed, 16 Dec 2020 01:42:03 +0000
libxdf | 0 | {imaging-dev} |
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
+ mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
nanosv | 0 | {covid-19,bio} |
@@ -219,6 +221,7 @@ Last-Update: Wed, 16 Dec 2020 01:42:03 +0000
python-bcbio-gff | 0 | {bio-dev} |
python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
@@ -241,8 +244,7 @@ Last-Update: Wed, 16 Dec 2020 01:42:03 +0000
mssstest | -1 | {tools} |
orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
- q2-sample-classifier | -1 | {bio-dev,bio} |
sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
-(273 rows)
+(275 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3316534dae2c0a772ee22b0c15f1a98492ad12fb
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/3316534dae2c0a772ee22b0c15f1a98492ad12fb
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