Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
085600aa by Andreas Tille at 2020-12-17T13:45:41+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,102 +1,107 @@
-Last-Update: Thu, 17 Dec 2020 01:42:03 +0000
+Last-Update: Thu, 17 Dec 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 193 | {imaging,covid-19} |
- orthanc | 102 | {imaging,covid-19,practice} |
+ dcmtk | 192 | {imaging,covid-19} |
+ orthanc | 101 | {imaging,covid-19,practice} |
orthanc-wsi | 55 | {covid-19,laboratory,practice,oncology,his,imaging} |
gdcm | 43 | {imaging-dev} |
- htsjdk | 35 | {bio-dev} |
- amide | 28 | {imaging} |
- dicom3tools | 23 | {imaging} |
- dcm2niix | 21 | {imaging} |
- dicomscope | 19 | {imaging} |
- gdcm | 19 | {imaging,covid-19} |
- gnumed-server | 18 | {covid-19,practice} |
- ngs-sdk | 16 | {bio-dev} |
- adun.app | 15 | {bio} |
+ htsjdk | 36 | {bio-dev} |
+ amide | 31 | {imaging} |
+ dicom3tools | 24 | {imaging} |
+ dcm2niix | 20 | {imaging} |
+ gdcm | 20 | {imaging,covid-19} |
+ gnumed-server | 19 | {covid-19,practice} |
+ dicomscope | 18 | {imaging} |
+ odin | 18 | {imaging-dev,imaging} |
+ ngs-sdk | 17 | {bio-dev} |
+ adun.app | 16 | {bio} |
invesalius | 15 | {imaging} |
nifticlib | 15 | {imaging} |
dicomnifti | 14 | {imaging} |
- minc-tools | 13 | {imaging} |
+ minc-tools | 14 | {imaging} |
gdcm | 12 | {imaging-dev} |
+ pixelmed | 12 | {imaging} |
melting | 11 | {bio,cloud} |
ngs-sdk | 11 | {bio-dev} |
- pixelmed | 11 | {imaging} |
+ plastimatch | 11 | {imaging} |
+ ea-utils | 10 | {bio} |
librg-utils-perl | 10 | {bio} |
- plastimatch | 10 | {imaging} |
+ mia | 10 | {imaging} |
+ ngs-sdk | 10 | {bio-dev} |
+ openslide | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
biosig | 9 | {imaging,physics} |
- ea-utils | 9 | {bio} |
+ fastlink | 9 | {bio,cloud} |
+ insighttoolkit4 | 9 | {imaging-dev} |
+ jebl2 | 9 | {bio-dev} |
king | 9 | {imaging,typesetting} |
- mia | 9 | {imaging} |
- openslide | 9 | {imaging} |
+ obitools | 9 | {bio} |
orthanc-webviewer | 9 | {imaging} |
bamkit | 8 | {bio,covid-19} |
- fastlink | 8 | {bio,cloud} |
- insighttoolkit4 | 8 | {imaging-dev} |
- jebl2 | 8 | {bio-dev} |
- ngs-sdk | 8 | {bio-dev} |
- obitools | 8 | {bio} |
salmon | 8 | {covid-19,bio} |
+ treeview | 8 | {bio,bio-phylogeny} |
+ beast-mcmc | 7 | {bio,bio-phylogeny} |
+ biojava-live | 7 | {bio-dev} |
+ dicompyler | 7 | {oncology} |
libpal-java | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
orthanc-dicomweb | 7 | {imaging,covid-19} |
+ prime-phylo | 7 | {cloud,bio} |
pymia | 7 | {imaging-dev} |
rambo-k | 7 | {bio} |
seqsero | 7 | {bio} |
- treeview | 7 | {bio,bio-phylogeny} |
- beast-mcmc | 6 | {bio,bio-phylogeny} |
- biojava-live | 6 | {bio-dev} |
+ arden | 6 | {bio,cloud} |
+ bio-tradis | 6 | {bio,bio-dev} |
+ embassy-domalign | 6 | {cloud,bio} |
+ embassy-domsearch | 6 | {bio,cloud} |
+ lagan | 6 | {bio} |
libncl | 6 | {bio} |
+ mipe | 6 | {cloud,bio} |
nifti2dicom | 6 | {imaging} |
+ phast | 6 | {bio} |
phybin | 6 | {bio} |
phyutility | 6 | {cloud,bio} |
placnet | 6 | {bio} |
- prime-phylo | 6 | {cloud,bio} |
prottest | 6 | {bio-phylogeny,bio} |
rdp-alignment | 6 | {bio} |
staden | 6 | {bio} |
- arden | 5 | {bio,cloud} |
- bio-tradis | 5 | {bio,bio-dev} |
- dicompyler | 5 | {oncology} |
+ zalign | 6 | {bio,cloud} |
+ anfo | 5 | {cloud,bio} |
ecopcr | 5 | {bio} |
- embassy-domalign | 5 | {cloud,bio} |
- embassy-domsearch | 5 | {bio,cloud} |
ghmm | 5 | {bio} |
ipig | 5 | {bio} |
+ jellyfish1 | 5 | {bio} |
jmodeltest | 5 | {bio-phylogeny,bio} |
- lagan | 5 | {bio} |
libdivsufsort | 5 | {bio-dev} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
mauve-aligner | 5 | {bio} |
- mipe | 5 | {cloud,bio} |
multiqc | 5 | {covid-19,bio} |
orthanc-mysql | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
pbdagcon | 5 | {bio} |
- phast | 5 | {bio} |
piler | 5 | {bio} |
rdp-classifier | 5 | {bio} |
runcircos-gui | 5 | {bio} |
saint | 5 | {bio} |
spread-phy | 5 | {bio-phylogeny,bio} |
- zalign | 5 | {bio,cloud} |
- anfo | 4 | {cloud,bio} |
+ assemblytics | 4 | {bio} |
bart-view | 4 | {imaging} |
+ bitseq | 4 | {bio} |
brig | 4 | {bio} |
busco | 4 | {bio,covid-19} |
+ clonalorigin | 4 | {bio} |
elastix | 4 | {imaging} |
embassy-domainatrix | 4 | {bio,cloud} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
- jellyfish1 | 4 | {bio} |
lamarc | 4 | {bio} |
libminc | 4 | {imaging-dev} |
metaphlan2 | 4 | {bio} |
microbegps | 4 | {bio} |
perm | 4 | {cloud,bio} |
proalign | 4 | {bio-phylogeny,bio} |
+ pscan-chip | 4 | {bio} |
quorum | 4 | {bio} |
sga | 4 | {bio} |
sibsim4 | 4 | {cloud,bio} |
@@ -106,12 +111,12 @@ Last-Update: Thu, 17 Dec 2020 01:42:03 +0000
stacks | 4 | {bio} |
surankco | 4 | {bio} |
tracetuner | 4 | {bio} |
- assemblytics | 3 | {bio} |
biomaj3-cli | 3 | {cloud} |
- bitseq | 3 | {bio} |
+ biomaj3-daemon | 3 | {bio} |
+ blasr | 3 | {bio,bio-ngs} |
canu | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
- clonalorigin | 3 | {bio} |
+ delly | 3 | {bio,covid-19} |
dindel | 3 | {bio} |
estscan | 3 | {bio} |
getdata | 3 | {bio} |
@@ -120,16 +125,12 @@ Last-Update: Thu, 17 Dec 2020 01:42:03 +0000
mhap | 3 | {bio-ngs,bio} |
oscar | 3 | {tools,practice,data} |
paraclu | 3 | {bio,cloud} |
- pscan-chip | 3 | {bio} |
qcumber | 3 | {bio} |
rtax | 3 | {cloud,bio} |
- sight | 3 | {imaging} |
soapaligner | 3 | {bio} |
suitename | 3 | {bio} |
- biomaj3-daemon | 2 | {bio} |
- blasr | 2 | {bio,bio-ngs} |
+ yaha | 3 | {bio} |
blimps | 2 | {bio} |
- delly | 2 | {bio,covid-19} |
gatb-core | 2 | {bio} |
libctapimkt | 2 | {practice} |
libsbml | 2 | {bio-dev} |
@@ -139,8 +140,8 @@ Last-Update: Thu, 17 Dec 2020 01:42:03 +0000
samtools-legacy | 2 | {bio-dev} |
segemehl | 2 | {bio} |
sift | 2 | {bio} |
+ sight | 2 | {imaging} |
tvc | 2 | {bio} |
- yaha | 2 | {bio} |
acedb | 1 | {cloud,bio} |
biosig | 1 | {imaging-dev,physics} |
biosig | 1 | {physics,imaging-dev} |
@@ -219,8 +220,8 @@ Last-Update: Thu, 17 Dec 2020 01:42:03 +0000
pique | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
@@ -246,5 +247,5 @@ Last-Update: Thu, 17 Dec 2020 01:42:03 +0000
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
-(275 rows)
+(276 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/085600aab1d52c90aa285f464ac13f77edca3c6e
--
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