Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
2ae306c1 by Andreas Tille at 2020-12-21T13:45:46+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,46 +1,45 @@
-Last-Update: Mon, 21 Dec 2020 01:42:04 +0000
+Last-Update: Mon, 21 Dec 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 200 | {imaging,covid-19} |
- orthanc | 104 | {imaging,covid-19,practice} |
- orthanc-wsi | 56 | {covid-19,laboratory,practice,oncology,his,imaging} |
- gdcm | 47 | {imaging-dev} |
+ dcmtk | 198 | {imaging,covid-19} |
+ orthanc | 103 | {imaging,covid-19,practice} |
+ orthanc-wsi | 55 | {covid-19,laboratory,practice,oncology,his,imaging} |
+ gdcm | 44 | {imaging-dev} |
htsjdk | 32 | {bio-dev} |
- amide | 29 | {imaging} |
- dicom3tools | 24 | {imaging} |
+ amide | 28 | {imaging} |
+ dicom3tools | 25 | {imaging} |
dicomscope | 21 | {imaging} |
gnumed-server | 20 | {covid-19,practice} |
- gdcm | 18 | {imaging,covid-19} |
- odin | 18 | {imaging-dev,imaging} |
+ gdcm | 17 | {imaging,covid-19} |
invesalius | 17 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
- dcm2niix | 15 | {imaging} |
- adun.app | 14 | {bio} |
- gdcm | 14 | {imaging-dev} |
- dicomnifti | 13 | {imaging} |
- minc-tools | 13 | {imaging} |
+ odin | 15 | {imaging-dev,imaging} |
+ dcm2niix | 14 | {imaging} |
+ adun.app | 13 | {bio} |
+ gdcm | 13 | {imaging-dev} |
nifticlib | 13 | {imaging} |
- mia | 11 | {imaging} |
+ dicomnifti | 12 | {imaging} |
+ minc-tools | 12 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
- plastimatch | 11 | {imaging} |
ea-utils | 10 | {bio} |
- insighttoolkit4 | 10 | {imaging-dev} |
- king | 10 | {imaging,typesetting} |
librg-utils-perl | 10 | {bio} |
melting | 10 | {bio,cloud} |
+ mia | 10 | {imaging} |
obitools | 10 | {bio} |
- openslide | 10 | {imaging} |
pixelmed | 10 | {imaging} |
- vtk-dicom | 10 | {imaging} |
- biosig | 9 | {imaging,physics} |
+ plastimatch | 10 | {imaging} |
fastlink | 9 | {bio,cloud} |
- jebl2 | 9 | {bio-dev} |
+ insighttoolkit4 | 9 | {imaging-dev} |
+ king | 9 | {imaging,typesetting} |
ngs-sdk | 9 | {bio-dev} |
+ openslide | 9 | {imaging} |
orthanc-webviewer | 9 | {imaging} |
+ vtk-dicom | 9 | {imaging} |
bamkit | 8 | {bio,covid-19} |
+ biosig | 8 | {imaging,physics} |
+ jebl2 | 8 | {bio-dev} |
treeview | 8 | {bio,bio-phylogeny} |
- beast-mcmc | 7 | {bio,bio-phylogeny} |
biojava-live | 7 | {bio-dev} |
dicompyler | 7 | {oncology} |
libpal-java | 7 | {bio-dev} |
@@ -53,12 +52,14 @@ Last-Update: Mon, 21 Dec 2020 01:42:04 +0000
salmon | 7 | {covid-19,bio} |
seqsero | 7 | {bio} |
arden | 6 | {bio,cloud} |
+ beast-mcmc | 6 | {bio,bio-phylogeny} |
bio-tradis | 6 | {bio,bio-dev} |
embassy-domalign | 6 | {cloud,bio} |
embassy-domsearch | 6 | {bio,cloud} |
lagan | 6 | {bio} |
libncl | 6 | {bio} |
mipe | 6 | {cloud,bio} |
+ multiqc | 6 | {covid-19,bio} |
phast | 6 | {bio} |
phybin | 6 | {bio} |
phyutility | 6 | {cloud,bio} |
@@ -77,7 +78,6 @@ Last-Update: Mon, 21 Dec 2020 01:42:04 +0000
libdivsufsort | 5 | {bio-dev} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
mauve-aligner | 5 | {bio} |
- multiqc | 5 | {covid-19,bio} |
orthanc-mysql | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
pbdagcon | 5 | {bio} |
@@ -88,7 +88,6 @@ Last-Update: Mon, 21 Dec 2020 01:42:04 +0000
spread-phy | 5 | {bio-phylogeny,bio} |
stacks | 5 | {bio} |
assemblytics | 4 | {bio} |
- bart-view | 4 | {imaging} |
brig | 4 | {bio} |
clonalorigin | 4 | {bio} |
elastix | 4 | {imaging} |
@@ -110,6 +109,7 @@ Last-Update: Mon, 21 Dec 2020 01:42:04 +0000
spaced | 4 | {bio} |
sprai | 4 | {bio} |
surankco | 4 | {bio} |
+ bart-view | 3 | {imaging} |
biomaj3-cli | 3 | {cloud} |
biomaj3-daemon | 3 | {bio} |
blasr | 3 | {bio,bio-ngs} |
@@ -133,18 +133,16 @@ Last-Update: Mon, 21 Dec 2020 01:42:04 +0000
gatb-core | 2 | {bio} |
libctapimkt | 2 | {practice} |
libmuscle | 2 | {bio-dev} |
- oscar | 2 | {tools,practice,data} |
plasmidseeker | 2 | {bio} |
salmid | 2 | {bio} |
samblaster | 2 | {bio,covid-19} |
samtools-legacy | 2 | {bio-dev} |
segemehl | 2 | {bio} |
sift | 2 | {bio} |
- sight | 2 | {imaging} |
tvc | 2 | {bio} |
acedb | 1 | {cloud,bio} |
- biosig | 1 | {physics,imaging-dev} |
biosig | 1 | {imaging-dev,physics} |
+ biosig | 1 | {physics,imaging-dev} |
gifticlib | 1 | {imaging-dev} |
htscodecs | 1 | {covid-19,bio-dev} |
intake | 1 | {bio,bio-dev} |
@@ -152,14 +150,17 @@ Last-Update: Mon, 21 Dec 2020 01:42:04 +0000
opencfu | 1 | {laboratory} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
+ oscar | 1 | {tools,practice,data} |
papyrus | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
pigx-rnaseq | 1 | {covid-19,bio} |
plasmidid | 1 | {bio,covid-19} |
seqan | 1 | {bio-dev} |
+ sight | 1 | {imaging} |
simpleitk | 1 | {imaging-dev} |
srf | 1 | {bio-dev} |
trace2dbest | 1 | {bio} |
+ vienna-rna | 1 | {covid-19,bio} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19,bio} |
@@ -221,8 +222,8 @@ Last-Update: Mon, 21 Dec 2020 01:42:04 +0000
pique | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
@@ -239,7 +240,6 @@ Last-Update: Mon, 21 Dec 2020 01:42:04 +0000
tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
- vienna-rna | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
yanagiba | 0 | {covid-19,bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2ae306c11e0c76085cef6ae63c39314566c10995
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2ae306c11e0c76085cef6ae63c39314566c10995
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