[med-svn] [Git][med-team/flexbar][master] 14 commits: Clean up after build-time tests (Fixes un-reproducible build)
Nilesh Patra
gitlab at salsa.debian.org
Tue Dec 22 04:15:41 GMT 2020
Nilesh Patra pushed to branch master at Debian Med / flexbar
Commits:
884b3dbc by Nilesh Patra at 2020-12-22T09:14:40+05:30
Clean up after build-time tests (Fixes un-reproducible build)
- - - - -
277554e6 by Nilesh Patra at 2020-12-22T09:27:32+05:30
Really add autopkgtests
- - - - -
8e9cc9e2 by Nilesh Patra at 2020-12-22T09:27:42+05:30
Remove useless file
- - - - -
0c31c6ca by Nilesh Patra at 2020-12-22T09:30:02+05:30
Clean Up after autopkgtests as well
- - - - -
6c76dc19 by Nilesh Patra at 2020-12-22T09:30:12+05:30
Update changelog
- - - - -
990cbcd2 by Nilesh Patra at 2020-12-22T09:30:29+05:30
routine-update: Standards-Version: 4.5.1
- - - - -
c34b88d9 by Nilesh Patra at 2020-12-22T09:30:30+05:30
routine-update: debhelper-compat 13
- - - - -
c5a8e31e by Nilesh Patra at 2020-12-22T09:30:39+05:30
routine-update: Remove trailing whitespace in debian/changelog
- - - - -
b4ce8dcc by Nilesh Patra at 2020-12-22T09:30:39+05:30
routine-update: Add salsa-ci file
- - - - -
d70b0983 by Nilesh Patra at 2020-12-22T09:30:40+05:30
routine-update: Rules-Requires-Root: no
- - - - -
622240b3 by Nilesh Patra at 2020-12-22T09:30:50+05:30
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
- - - - -
877cd86c by Nilesh Patra at 2020-12-22T09:34:59+05:30
Rename tag
- - - - -
b027f599 by Nilesh Patra at 2020-12-22T09:35:24+05:30
Switch watch version to 4
- - - - -
686e301d by Nilesh Patra at 2020-12-22T09:36:23+05:30
Update changelog
- - - - -
9 changed files:
- debian/changelog
- debian/control
- debian/lintian-overrides
- debian/rules
- + debian/salsa-ci.yml
- − debian/test
- debian/tests/run-unit-tests
- debian/upstream/metadata
- debian/watch
Changes:
=====================================
debian/changelog
=====================================
@@ -1,9 +1,31 @@
+flexbar (1:3.5.0-3) unstable; urgency=medium
+
+ * Team Upload.
+ [ Steffen Möller ]
+ * Added ref to conda
+
+ [ Nilesh Patra ]
+ * Clean up after build-time tests
+ (Fixes un-reproducible build)
+ * Really add autopkgtests
+ * Remove useless file
+ * Standards-Version: 4.5.1 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Remove trailing whitespace in debian/changelog (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
+ Repository-Browse.
+ * Switch watch version to 4
+
+ -- Nilesh Patra <npatra974 at gmail.com> Tue, 22 Dec 2020 09:30:50 +0530
+
flexbar (1:3.5.0-2) unstable; urgency=medium
* Team upload.
-
+
[Saira Hussain]
- * Add autopkgtest
+ * Add autopkgtest
-- Saira Hussain <saira.h0213 at zoho.com> Fri, 02 Aug 2019 11:43:53 +0100
=====================================
debian/control
=====================================
@@ -4,16 +4,17 @@ Uploaders: Andreas Tille <tille at debian.org>,
Tony Travis <ajt at minke.ukfsn.org>
Section: science
Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
libtbb-dev,
cmake,
libseqan2-dev,
zlib1g-dev,
libbz2-dev
-Standards-Version: 4.4.0
+Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/flexbar
Vcs-Git: https://salsa.debian.org/med-team/flexbar.git
Homepage: https://github.com/seqan/flexbar
+Rules-Requires-Root: no
Package: flexbar
Architecture: any
=====================================
debian/lintian-overrides
=====================================
@@ -1,2 +1,2 @@
# Upstream intends to provide both kind of compressions to test
-flexbar: duplicated-compressed-file usr/share/doc/flexbar/examples/*
+flexbar: compressed-duplicate usr/share/doc/flexbar/examples/*
=====================================
debian/rules
=====================================
@@ -15,8 +15,9 @@ ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
export HOME=/tmp ; \
which flexbar ; \
./flexbar_test.sh
+ rm -f test/result_*fast[aq] test/result_*.log
endif
override_dh_auto_clean:
dh_auto_clean
- rm -f test/result_*fast[aq]
+ rm -f test/result_*fast[aq] test/result_*.log
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/test deleted
=====================================
@@ -1 +0,0 @@
-test/*
\ No newline at end of file
=====================================
debian/tests/run-unit-tests
=====================================
@@ -19,7 +19,5 @@ cd "${AUTOPKGTEST_TMP}"
# Just for debugging
set -x
-# Perform the test suite
-
-# Perform the fasta test suite
-
+./flexbar_test.sh
+rm -f test/result_*fast[aq] test/result_*.log
=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,5 @@
+Bug-Database: https://github.com/seqan/flexbar/issues
+Bug-Submit: https://github.com/seqan/flexbar/issues/new
Reference:
Author: >
Matthias Dodt and Johannes T. Roehr and Rina Ahmed and
@@ -22,3 +24,5 @@ Registry:
Entry: SCR_013001
- Name: conda:bioconda
Entry: flexbar
+Repository: https://github.com/seqan/flexbar.git
+Repository-Browse: https://github.com/seqan/flexbar
=====================================
debian/watch
=====================================
@@ -1,3 +1,3 @@
-version=3
+version=4
https://github.com/seqan/flexbar/releases .*/archive/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
View it on GitLab: https://salsa.debian.org/med-team/flexbar/-/compare/fcddc45709891cf2359d04bd1a15ae1b200d4738...686e301d33c29744ecc6776a93de88fd38f6d89e
--
View it on GitLab: https://salsa.debian.org/med-team/flexbar/-/compare/fcddc45709891cf2359d04bd1a15ae1b200d4738...686e301d33c29744ecc6776a93de88fd38f6d89e
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