Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
762e72ec by Andreas Tille at 2020-12-22T13:46:06+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,14 +1,14 @@
-Last-Update: Tue, 22 Dec 2020 01:42:03 +0000
+Last-Update: Tue, 22 Dec 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 198 | {imaging,covid-19} |
- orthanc | 103 | {imaging,covid-19,practice} |
+ dcmtk | 197 | {imaging,covid-19} |
+ orthanc | 104 | {imaging,covid-19,practice} |
orthanc-wsi | 55 | {covid-19,laboratory,practice,oncology,his,imaging} |
- gdcm | 44 | {imaging-dev} |
+ gdcm | 47 | {imaging-dev} |
htsjdk | 32 | {bio-dev} |
- amide | 28 | {imaging} |
- dicom3tools | 25 | {imaging} |
+ amide | 29 | {imaging} |
+ dicom3tools | 26 | {imaging} |
dicomscope | 21 | {imaging} |
gnumed-server | 20 | {covid-19,practice} |
gdcm | 17 | {imaging,covid-19} |
@@ -17,104 +17,106 @@ Last-Update: Tue, 22 Dec 2020 01:42:03 +0000
odin | 15 | {imaging-dev,imaging} |
dcm2niix | 14 | {imaging} |
adun.app | 13 | {bio} |
- gdcm | 13 | {imaging-dev} |
- nifticlib | 13 | {imaging} |
- dicomnifti | 12 | {imaging} |
+ gdcm | 12 | {imaging-dev} |
minc-tools | 12 | {imaging} |
- ngs-sdk | 11 | {bio-dev} |
+ nifticlib | 12 | {imaging} |
+ dicomnifti | 10 | {imaging} |
ea-utils | 10 | {bio} |
librg-utils-perl | 10 | {bio} |
melting | 10 | {bio,cloud} |
mia | 10 | {imaging} |
- obitools | 10 | {bio} |
- pixelmed | 10 | {imaging} |
- plastimatch | 10 | {imaging} |
+ ngs-sdk | 10 | {bio-dev} |
+ bamkit | 9 | {bio,covid-19} |
fastlink | 9 | {bio,cloud} |
insighttoolkit4 | 9 | {imaging-dev} |
- king | 9 | {imaging,typesetting} |
ngs-sdk | 9 | {bio-dev} |
- openslide | 9 | {imaging} |
+ obitools | 9 | {bio} |
orthanc-webviewer | 9 | {imaging} |
+ pixelmed | 9 | {imaging} |
+ plastimatch | 9 | {imaging} |
vtk-dicom | 9 | {imaging} |
- bamkit | 8 | {bio,covid-19} |
biosig | 8 | {imaging,physics} |
jebl2 | 8 | {bio-dev} |
+ king | 8 | {imaging,typesetting} |
+ openslide | 8 | {imaging} |
+ rambo-k | 8 | {bio} |
treeview | 8 | {bio,bio-phylogeny} |
+ beast-mcmc | 7 | {bio,bio-phylogeny} |
biojava-live | 7 | {bio-dev} |
+ bio-tradis | 7 | {bio,bio-dev} |
dicompyler | 7 | {oncology} |
+ embassy-domsearch | 7 | {bio,cloud} |
+ lagan | 7 | {bio} |
+ libncl | 7 | {bio} |
libpal-java | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
orthanc-dicomweb | 7 | {imaging,covid-19} |
+ phybin | 7 | {bio} |
+ placnet | 7 | {bio} |
prime-phylo | 7 | {cloud,bio} |
- pymia | 7 | {imaging-dev} |
- rambo-k | 7 | {bio} |
rdp-alignment | 7 | {bio} |
salmon | 7 | {covid-19,bio} |
seqsero | 7 | {bio} |
+ staden | 7 | {bio} |
arden | 6 | {bio,cloud} |
- beast-mcmc | 6 | {bio,bio-phylogeny} |
- bio-tradis | 6 | {bio,bio-dev} |
+ bitseq | 6 | {bio} |
embassy-domalign | 6 | {cloud,bio} |
- embassy-domsearch | 6 | {bio,cloud} |
- lagan | 6 | {bio} |
- libncl | 6 | {bio} |
+ jmodeltest | 6 | {bio-phylogeny,bio} |
mipe | 6 | {cloud,bio} |
multiqc | 6 | {covid-19,bio} |
phast | 6 | {bio} |
- phybin | 6 | {bio} |
phyutility | 6 | {cloud,bio} |
- placnet | 6 | {bio} |
prottest | 6 | {bio-phylogeny,bio} |
- staden | 6 | {bio} |
+ pymia | 6 | {imaging-dev} |
+ saint | 6 | {bio} |
zalign | 6 | {bio,cloud} |
anfo | 5 | {cloud,bio} |
- bitseq | 5 | {bio} |
+ assemblytics | 5 | {bio} |
busco | 5 | {bio,covid-19} |
ecopcr | 5 | {bio} |
+ fastml | 5 | {bio} |
ghmm | 5 | {bio} |
ipig | 5 | {bio} |
jellyfish1 | 5 | {bio} |
- jmodeltest | 5 | {bio-phylogeny,bio} |
- libdivsufsort | 5 | {bio-dev} |
+ lamarc | 5 | {bio} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
mauve-aligner | 5 | {bio} |
orthanc-mysql | 5 | {imaging} |
orthanc-postgresql | 5 | {imaging} |
pbdagcon | 5 | {bio} |
piler | 5 | {bio} |
+ proalign | 5 | {bio-phylogeny,bio} |
rdp-classifier | 5 | {bio} |
runcircos-gui | 5 | {bio} |
- saint | 5 | {bio} |
+ sga | 5 | {bio} |
+ sibsim4 | 5 | {cloud,bio} |
+ sprai | 5 | {bio} |
spread-phy | 5 | {bio-phylogeny,bio} |
- stacks | 5 | {bio} |
- assemblytics | 4 | {bio} |
+ biomaj3-cli | 4 | {cloud} |
+ biomaj3-daemon | 4 | {bio} |
brig | 4 | {bio} |
+ canu | 4 | {bio} |
+ clonalframeml | 4 | {covid-19,bio} |
clonalorigin | 4 | {bio} |
elastix | 4 | {imaging} |
embassy-domainatrix | 4 | {bio,cloud} |
- fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
- lamarc | 4 | {bio} |
+ libdivsufsort | 4 | {bio-dev} |
libminc | 4 | {imaging-dev} |
metaphlan2 | 4 | {bio} |
microbegps | 4 | {bio} |
paraclu | 4 | {bio,cloud} |
perm | 4 | {cloud,bio} |
- proalign | 4 | {bio-phylogeny,bio} |
pscan-chip | 4 | {bio} |
quorum | 4 | {bio} |
- sga | 4 | {bio} |
- sibsim4 | 4 | {cloud,bio} |
+ rtax | 4 | {cloud,bio} |
+ soapaligner | 4 | {bio} |
soapsnp | 4 | {bio} |
spaced | 4 | {bio} |
- sprai | 4 | {bio} |
+ stacks | 4 | {bio} |
surankco | 4 | {bio} |
bart-view | 3 | {imaging} |
- biomaj3-cli | 3 | {cloud} |
- biomaj3-daemon | 3 | {bio} |
blasr | 3 | {bio,bio-ngs} |
- canu | 3 | {bio} |
- clonalframeml | 3 | {covid-19,bio} |
delly | 3 | {bio,covid-19} |
dindel | 3 | {bio} |
estscan | 3 | {bio} |
@@ -124,8 +126,8 @@ Last-Update: Tue, 22 Dec 2020 01:42:03 +0000
logol | 3 | {bio} |
mhap | 3 | {bio-ngs,bio} |
qcumber | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
- soapaligner | 3 | {bio} |
+ samblaster | 3 | {bio,covid-19} |
+ segemehl | 3 | {bio} |
suitename | 3 | {bio} |
tracetuner | 3 | {bio} |
yaha | 3 | {bio} |
@@ -133,34 +135,38 @@ Last-Update: Tue, 22 Dec 2020 01:42:03 +0000
gatb-core | 2 | {bio} |
libctapimkt | 2 | {practice} |
libmuscle | 2 | {bio-dev} |
+ openslide | 2 | {imaging-dev} |
plasmidseeker | 2 | {bio} |
- salmid | 2 | {bio} |
- samblaster | 2 | {bio,covid-19} |
samtools-legacy | 2 | {bio-dev} |
- segemehl | 2 | {bio} |
sift | 2 | {bio} |
tvc | 2 | {bio} |
acedb | 1 | {cloud,bio} |
biosig | 1 | {imaging-dev,physics} |
biosig | 1 | {physics,imaging-dev} |
+ bustools | 1 | {covid-19,bio} |
+ dextractor | 1 | {covid-19,bio} |
+ emmax | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
htscodecs | 1 | {covid-19,bio-dev} |
intake | 1 | {bio,bio-dev} |
libvistaio | 1 | {imaging-dev} |
+ nanosv | 1 | {covid-19,bio} |
opencfu | 1 | {laboratory} |
- openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
oscar | 1 | {tools,practice,data} |
papyrus | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
pigx-rnaseq | 1 | {covid-19,bio} |
plasmidid | 1 | {bio,covid-19} |
+ salmid | 1 | {bio} |
seqan | 1 | {bio-dev} |
- sight | 1 | {imaging} |
simpleitk | 1 | {imaging-dev} |
+ skesa | 1 | {bio} |
+ skewer | 1 | {bio} |
srf | 1 | {bio-dev} |
trace2dbest | 1 | {bio} |
vienna-rna | 1 | {covid-19,bio} |
+ yanagiba | 1 | {covid-19,bio} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19,bio} |
@@ -168,15 +174,12 @@ Last-Update: Tue, 22 Dec 2020 01:42:03 +0000
biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
- bustools | 0 | {covid-19,bio} |
camp | 0 | {imaging-dev} |
cat-bat | 0 | {bio,covid-19} |
ctn | 0 | {imaging-dev} |
cufflinks | 0 | {cloud,bio} |
- dextractor | 0 | {covid-19,bio} |
eegdev | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
- emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
kmerresistance | 0 | {bio} |
@@ -212,7 +215,6 @@ Last-Update: Tue, 22 Dec 2020 01:42:03 +0000
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
- nanosv | 0 | {covid-19,bio} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
@@ -222,18 +224,17 @@ Last-Update: Tue, 22 Dec 2020 01:42:03 +0000
pique | 0 | {bio} |
pplacer | 0 | {bio-phylogeny,bio,covid-19} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
q2-sample-classifier | 0 | {bio-dev,bio} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
shovill | 0 | {bio,covid-19} |
+ sight | 0 | {imaging} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
- skesa | 0 | {bio} |
- skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
spaln | 0 | {covid-19,bio} |
thesias | 0 | {bio,covid-19} |
@@ -242,7 +243,6 @@ Last-Update: Tue, 22 Dec 2020 01:42:03 +0000
varscan | 0 | {covid-19,bio} |
vtk-dicom | 0 | {imaging-dev} |
xdffileio | 0 | {imaging-dev} |
- yanagiba | 0 | {covid-19,bio} |
mssstest | -1 | {tools} |
orthanc-gdcm | -1 | {imaging} |
orthanc-python | -1 | {covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/762e72ec3fb3f8730591b8ff0f4900f7c78de5f2
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/762e72ec3fb3f8730591b8ff0f4900f7c78de5f2
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