Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
8e1ff48f by Andreas Tille at 2020-12-23T13:46:07+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,72 +1,72 @@
-Last-Update: Wed, 23 Dec 2020 01:42:03 +0000
+Last-Update: Wed, 23 Dec 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 197 | {imaging,covid-19} |
- orthanc | 104 | {imaging,covid-19,practice} |
- orthanc-wsi | 55 | {covid-19,laboratory,practice,oncology,his,imaging} |
- gdcm | 47 | {imaging-dev} |
+ dcmtk | 198 | {covid-19,imaging} |
+ orthanc | 105 | {imaging,covid-19,practice} |
+ orthanc-wsi | 56 | {his,covid-19,imaging,practice,laboratory,oncology} |
+ gdcm | 46 | {imaging-dev} |
htsjdk | 32 | {bio-dev} |
amide | 29 | {imaging} |
dicom3tools | 26 | {imaging} |
dicomscope | 21 | {imaging} |
- gnumed-server | 20 | {covid-19,practice} |
- gdcm | 17 | {imaging,covid-19} |
- invesalius | 17 | {imaging} |
+ gnumed-server | 19 | {covid-19,practice} |
+ invesalius | 19 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
+ gdcm | 15 | {covid-19,imaging} |
odin | 15 | {imaging-dev,imaging} |
- dcm2niix | 14 | {imaging} |
adun.app | 13 | {bio} |
- gdcm | 12 | {imaging-dev} |
+ dcm2niix | 13 | {imaging} |
+ gdcm | 13 | {imaging-dev} |
minc-tools | 12 | {imaging} |
nifticlib | 12 | {imaging} |
dicomnifti | 10 | {imaging} |
ea-utils | 10 | {bio} |
librg-utils-perl | 10 | {bio} |
- melting | 10 | {bio,cloud} |
+ melting | 10 | {cloud,bio} |
mia | 10 | {imaging} |
ngs-sdk | 10 | {bio-dev} |
- bamkit | 9 | {bio,covid-19} |
- fastlink | 9 | {bio,cloud} |
- insighttoolkit4 | 9 | {imaging-dev} |
ngs-sdk | 9 | {bio-dev} |
obitools | 9 | {bio} |
orthanc-webviewer | 9 | {imaging} |
pixelmed | 9 | {imaging} |
plastimatch | 9 | {imaging} |
vtk-dicom | 9 | {imaging} |
- biosig | 8 | {imaging,physics} |
+ bamkit | 8 | {bio,covid-19} |
+ fastlink | 8 | {bio,cloud} |
+ insighttoolkit4 | 8 | {imaging-dev} |
jebl2 | 8 | {bio-dev} |
king | 8 | {imaging,typesetting} |
openslide | 8 | {imaging} |
+ prime-phylo | 8 | {bio,cloud} |
rambo-k | 8 | {bio} |
treeview | 8 | {bio,bio-phylogeny} |
- beast-mcmc | 7 | {bio,bio-phylogeny} |
+ beast-mcmc | 7 | {bio-phylogeny,bio} |
biojava-live | 7 | {bio-dev} |
- bio-tradis | 7 | {bio,bio-dev} |
+ biosig | 7 | {physics,imaging} |
+ bio-tradis | 7 | {bio-dev,bio} |
dicompyler | 7 | {oncology} |
embassy-domsearch | 7 | {bio,cloud} |
lagan | 7 | {bio} |
libncl | 7 | {bio} |
libpal-java | 7 | {bio-dev} |
+ multiqc | 7 | {bio,covid-19} |
nifti2dicom | 7 | {imaging} |
orthanc-dicomweb | 7 | {imaging,covid-19} |
phybin | 7 | {bio} |
- placnet | 7 | {bio} |
- prime-phylo | 7 | {cloud,bio} |
rdp-alignment | 7 | {bio} |
salmon | 7 | {covid-19,bio} |
seqsero | 7 | {bio} |
staden | 7 | {bio} |
- arden | 6 | {bio,cloud} |
+ arden | 6 | {cloud,bio} |
bitseq | 6 | {bio} |
- embassy-domalign | 6 | {cloud,bio} |
+ embassy-domalign | 6 | {bio,cloud} |
jmodeltest | 6 | {bio-phylogeny,bio} |
- mipe | 6 | {cloud,bio} |
- multiqc | 6 | {covid-19,bio} |
+ mipe | 6 | {bio,cloud} |
phast | 6 | {bio} |
phyutility | 6 | {cloud,bio} |
- prottest | 6 | {bio-phylogeny,bio} |
+ placnet | 6 | {bio} |
+ prottest | 6 | {bio,bio-phylogeny} |
pymia | 6 | {imaging-dev} |
saint | 6 | {bio} |
zalign | 6 | {bio,cloud} |
@@ -89,27 +89,27 @@ Last-Update: Wed, 23 Dec 2020 01:42:03 +0000
rdp-classifier | 5 | {bio} |
runcircos-gui | 5 | {bio} |
sga | 5 | {bio} |
- sibsim4 | 5 | {cloud,bio} |
+ sibsim4 | 5 | {bio,cloud} |
sprai | 5 | {bio} |
- spread-phy | 5 | {bio-phylogeny,bio} |
+ spread-phy | 5 | {bio,bio-phylogeny} |
biomaj3-cli | 4 | {cloud} |
biomaj3-daemon | 4 | {bio} |
brig | 4 | {bio} |
canu | 4 | {bio} |
- clonalframeml | 4 | {covid-19,bio} |
+ clonalframeml | 4 | {bio,covid-19} |
clonalorigin | 4 | {bio} |
elastix | 4 | {imaging} |
- embassy-domainatrix | 4 | {bio,cloud} |
+ embassy-domainatrix | 4 | {cloud,bio} |
fsm-lite | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
libminc | 4 | {imaging-dev} |
metaphlan2 | 4 | {bio} |
microbegps | 4 | {bio} |
- paraclu | 4 | {bio,cloud} |
+ paraclu | 4 | {cloud,bio} |
perm | 4 | {cloud,bio} |
pscan-chip | 4 | {bio} |
quorum | 4 | {bio} |
- rtax | 4 | {cloud,bio} |
+ rtax | 4 | {bio,cloud} |
soapaligner | 4 | {bio} |
soapsnp | 4 | {bio} |
spaced | 4 | {bio} |
@@ -117,7 +117,7 @@ Last-Update: Wed, 23 Dec 2020 01:42:03 +0000
surankco | 4 | {bio} |
bart-view | 3 | {imaging} |
blasr | 3 | {bio,bio-ngs} |
- delly | 3 | {bio,covid-19} |
+ delly | 3 | {covid-19,bio} |
dindel | 3 | {bio} |
estscan | 3 | {bio} |
getdata | 3 | {bio} |
@@ -135,23 +135,21 @@ Last-Update: Wed, 23 Dec 2020 01:42:03 +0000
gatb-core | 2 | {bio} |
libctapimkt | 2 | {practice} |
libmuscle | 2 | {bio-dev} |
- openslide | 2 | {imaging-dev} |
plasmidseeker | 2 | {bio} |
samtools-legacy | 2 | {bio-dev} |
sift | 2 | {bio} |
tvc | 2 | {bio} |
- acedb | 1 | {cloud,bio} |
- biosig | 1 | {imaging-dev,physics} |
- biosig | 1 | {physics,imaging-dev} |
- bustools | 1 | {covid-19,bio} |
+ acedb | 1 | {bio,cloud} |
+ bustools | 1 | {bio,covid-19} |
dextractor | 1 | {covid-19,bio} |
emmax | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
- htscodecs | 1 | {covid-19,bio-dev} |
- intake | 1 | {bio,bio-dev} |
+ htscodecs | 1 | {bio-dev,covid-19} |
+ intake | 1 | {bio-dev,bio} |
libvistaio | 1 | {imaging-dev} |
nanosv | 1 | {covid-19,bio} |
opencfu | 1 | {laboratory} |
+ openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
oscar | 1 | {tools,practice,data} |
papyrus | 1 | {imaging-dev} |
@@ -166,12 +164,14 @@ Last-Update: Wed, 23 Dec 2020 01:42:03 +0000
srf | 1 | {bio-dev} |
trace2dbest | 1 | {bio} |
vienna-rna | 1 | {covid-19,bio} |
- yanagiba | 1 | {covid-19,bio} |
+ yanagiba | 1 | {bio,covid-19} |
atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
- bbmap | 0 | {covid-19,bio} |
+ bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
+ biosig | 0 | {physics,imaging-dev} |
biosig | 0 | {physics} |
+ biosig | 0 | {imaging-dev,physics} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
@@ -201,7 +201,7 @@ Last-Update: Wed, 23 Dec 2020 01:42:03 +0000
libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {bio-dev,covid-19} |
+ libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
libmialm | 0 | {imaging-dev} |
libncl | 0 | {bio-dev} |
@@ -214,7 +214,7 @@ Last-Update: Wed, 23 Dec 2020 01:42:03 +0000
metastudent-data-2 | 0 | {bio} |
mia | 0 | {imaging-dev} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
+ milib | 0 | {bio-dev,covid-19} |
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
@@ -222,22 +222,22 @@ Last-Update: Wed, 23 Dec 2020 01:42:03 +0000
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
pique | 0 | {bio} |
- pplacer | 0 | {bio-phylogeny,bio,covid-19} |
+ pplacer | 0 | {covid-19,bio,bio-phylogeny} |
python-bcbio-gff | 0 | {bio-dev} |
python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
- q2-sample-classifier | 0 | {bio-dev,bio} |
+ q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
- shovill | 0 | {bio,covid-19} |
+ shovill | 0 | {covid-19,bio} |
sight | 0 | {imaging} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
- smrtanalysis | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {covid-19,bio} |
spaln | 0 | {covid-19,bio} |
- thesias | 0 | {bio,covid-19} |
+ thesias | 0 | {covid-19,bio} |
tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8e1ff48f6652960896b8f76f0919b1460b385f5b
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8e1ff48f6652960896b8f76f0919b1460b385f5b
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