Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
65948721 by Andreas Tille at 2020-12-24T13:45:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,33 +1,34 @@
-Last-Update: Thu, 24 Dec 2020 01:42:04 +0000
+Last-Update: Thu, 24 Dec 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
dcmtk | 198 | {covid-19,imaging} |
orthanc | 105 | {imaging,covid-19,practice} |
- orthanc-wsi | 56 | {his,covid-19,imaging,practice,laboratory,oncology} |
+ orthanc-wsi | 58 | {his,covid-19,imaging,practice,laboratory,oncology} |
gdcm | 46 | {imaging-dev} |
- htsjdk | 32 | {bio-dev} |
+ htsjdk | 33 | {bio-dev} |
amide | 29 | {imaging} |
dicom3tools | 26 | {imaging} |
dicomscope | 21 | {imaging} |
gnumed-server | 19 | {covid-19,practice} |
invesalius | 19 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
- gdcm | 15 | {covid-19,imaging} |
odin | 15 | {imaging-dev,imaging} |
+ gdcm | 14 | {covid-19,imaging} |
adun.app | 13 | {bio} |
dcm2niix | 13 | {imaging} |
gdcm | 13 | {imaging-dev} |
+ nifticlib | 13 | {imaging} |
minc-tools | 12 | {imaging} |
- nifticlib | 12 | {imaging} |
+ ngs-sdk | 11 | {bio-dev} |
+ obitools | 11 | {bio} |
dicomnifti | 10 | {imaging} |
ea-utils | 10 | {bio} |
librg-utils-perl | 10 | {bio} |
melting | 10 | {cloud,bio} |
mia | 10 | {imaging} |
- ngs-sdk | 10 | {bio-dev} |
ngs-sdk | 9 | {bio-dev} |
- obitools | 9 | {bio} |
+ openslide | 9 | {imaging} |
orthanc-webviewer | 9 | {imaging} |
pixelmed | 9 | {imaging} |
plastimatch | 9 | {imaging} |
@@ -37,7 +38,6 @@ Last-Update: Thu, 24 Dec 2020 01:42:04 +0000
insighttoolkit4 | 8 | {imaging-dev} |
jebl2 | 8 | {bio-dev} |
king | 8 | {imaging,typesetting} |
- openslide | 8 | {imaging} |
prime-phylo | 8 | {bio,cloud} |
rambo-k | 8 | {bio} |
treeview | 8 | {bio,bio-phylogeny} |
@@ -45,33 +45,34 @@ Last-Update: Thu, 24 Dec 2020 01:42:04 +0000
biojava-live | 7 | {bio-dev} |
biosig | 7 | {physics,imaging} |
bio-tradis | 7 | {bio-dev,bio} |
- dicompyler | 7 | {oncology} |
embassy-domsearch | 7 | {bio,cloud} |
lagan | 7 | {bio} |
libncl | 7 | {bio} |
- libpal-java | 7 | {bio-dev} |
multiqc | 7 | {bio,covid-19} |
nifti2dicom | 7 | {imaging} |
orthanc-dicomweb | 7 | {imaging,covid-19} |
phybin | 7 | {bio} |
+ pymia | 7 | {imaging-dev} |
rdp-alignment | 7 | {bio} |
salmon | 7 | {covid-19,bio} |
seqsero | 7 | {bio} |
staden | 7 | {bio} |
arden | 6 | {cloud,bio} |
bitseq | 6 | {bio} |
+ dicompyler | 6 | {oncology} |
embassy-domalign | 6 | {bio,cloud} |
jmodeltest | 6 | {bio-phylogeny,bio} |
+ libpal-java | 6 | {bio-dev} |
mipe | 6 | {bio,cloud} |
+ orthanc-postgresql | 6 | {imaging} |
phast | 6 | {bio} |
phyutility | 6 | {cloud,bio} |
placnet | 6 | {bio} |
- prottest | 6 | {bio,bio-phylogeny} |
- pymia | 6 | {imaging-dev} |
saint | 6 | {bio} |
zalign | 6 | {bio,cloud} |
anfo | 5 | {cloud,bio} |
assemblytics | 5 | {bio} |
+ biomaj3-daemon | 5 | {bio} |
busco | 5 | {bio,covid-19} |
ecopcr | 5 | {bio} |
fastml | 5 | {bio} |
@@ -82,10 +83,10 @@ Last-Update: Thu, 24 Dec 2020 01:42:04 +0000
librdp-taxonomy-tree-java | 5 | {bio-dev} |
mauve-aligner | 5 | {bio} |
orthanc-mysql | 5 | {imaging} |
- orthanc-postgresql | 5 | {imaging} |
pbdagcon | 5 | {bio} |
piler | 5 | {bio} |
proalign | 5 | {bio-phylogeny,bio} |
+ prottest | 5 | {bio,bio-phylogeny} |
rdp-classifier | 5 | {bio} |
runcircos-gui | 5 | {bio} |
sga | 5 | {bio} |
@@ -93,7 +94,6 @@ Last-Update: Thu, 24 Dec 2020 01:42:04 +0000
sprai | 5 | {bio} |
spread-phy | 5 | {bio,bio-phylogeny} |
biomaj3-cli | 4 | {cloud} |
- biomaj3-daemon | 4 | {bio} |
brig | 4 | {bio} |
canu | 4 | {bio} |
clonalframeml | 4 | {bio,covid-19} |
@@ -115,6 +115,7 @@ Last-Update: Thu, 24 Dec 2020 01:42:04 +0000
spaced | 4 | {bio} |
stacks | 4 | {bio} |
surankco | 4 | {bio} |
+ yaha | 4 | {bio} |
bart-view | 3 | {imaging} |
blasr | 3 | {bio,bio-ngs} |
delly | 3 | {covid-19,bio} |
@@ -130,7 +131,6 @@ Last-Update: Thu, 24 Dec 2020 01:42:04 +0000
segemehl | 3 | {bio} |
suitename | 3 | {bio} |
tracetuner | 3 | {bio} |
- yaha | 3 | {bio} |
blimps | 2 | {bio} |
gatb-core | 2 | {bio} |
libctapimkt | 2 | {practice} |
@@ -145,9 +145,9 @@ Last-Update: Thu, 24 Dec 2020 01:42:04 +0000
emmax | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
htscodecs | 1 | {bio-dev,covid-19} |
- intake | 1 | {bio-dev,bio} |
libvistaio | 1 | {imaging-dev} |
nanosv | 1 | {covid-19,bio} |
+ nifticlib | 1 | {imaging-dev} |
opencfu | 1 | {laboratory} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
@@ -158,6 +158,7 @@ Last-Update: Thu, 24 Dec 2020 01:42:04 +0000
plasmidid | 1 | {bio,covid-19} |
salmid | 1 | {bio} |
seqan | 1 | {bio-dev} |
+ sight | 1 | {imaging} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
skewer | 1 | {bio} |
@@ -170,8 +171,8 @@ Last-Update: Thu, 24 Dec 2020 01:42:04 +0000
bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics,imaging-dev} |
- biosig | 0 | {physics} |
biosig | 0 | {imaging-dev,physics} |
+ biosig | 0 | {physics} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
@@ -182,6 +183,7 @@ Last-Update: Thu, 24 Dec 2020 01:42:04 +0000
emboss-explorer | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
+ intake | 0 | {bio-dev,bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -224,15 +226,14 @@ Last-Update: Thu, 24 Dec 2020 01:42:04 +0000
pique | 0 | {bio} |
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {bio} |
python-seqcluster | 0 | {covid-19,bio-dev} |
+ python-seqcluster | 0 | {bio} |
q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
shovill | 0 | {covid-19,bio} |
- sight | 0 | {imaging} |
simpleitk | 0 | {imaging-dev} |
simrisc | 0 | {oncology} |
smrtanalysis | 0 | {covid-19,bio} |
@@ -248,5 +249,5 @@ Last-Update: Thu, 24 Dec 2020 01:42:04 +0000
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
-(278 rows)
+(279 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/659487211378aebfe8fd7ba727f86967391347d7
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/659487211378aebfe8fd7ba727f86967391347d7
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