Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
6cf5ebad by Andreas Tille at 2020-12-25T13:46:17+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,54 +1,55 @@
-Last-Update: Fri, 25 Dec 2020 01:42:03 +0000
+Last-Update: Fri, 25 Dec 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 198 | {covid-19,imaging} |
+ dcmtk | 200 | {covid-19,imaging} |
orthanc | 105 | {imaging,covid-19,practice} |
orthanc-wsi | 58 | {his,covid-19,imaging,practice,laboratory,oncology} |
- gdcm | 46 | {imaging-dev} |
- htsjdk | 33 | {bio-dev} |
- amide | 29 | {imaging} |
+ gdcm | 45 | {imaging-dev} |
+ htsjdk | 35 | {bio-dev} |
+ amide | 28 | {imaging} |
dicom3tools | 26 | {imaging} |
dicomscope | 21 | {imaging} |
gnumed-server | 19 | {covid-19,practice} |
invesalius | 19 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
- odin | 15 | {imaging-dev,imaging} |
- gdcm | 14 | {covid-19,imaging} |
- adun.app | 13 | {bio} |
+ odin | 16 | {imaging-dev,imaging} |
+ adun.app | 14 | {bio} |
dcm2niix | 13 | {imaging} |
+ gdcm | 13 | {covid-19,imaging} |
gdcm | 13 | {imaging-dev} |
nifticlib | 13 | {imaging} |
minc-tools | 12 | {imaging} |
- ngs-sdk | 11 | {bio-dev} |
+ ngs-sdk | 12 | {bio-dev} |
obitools | 11 | {bio} |
dicomnifti | 10 | {imaging} |
ea-utils | 10 | {bio} |
librg-utils-perl | 10 | {bio} |
melting | 10 | {cloud,bio} |
mia | 10 | {imaging} |
+ vtk-dicom | 10 | {imaging} |
+ fastlink | 9 | {bio,cloud} |
+ king | 9 | {imaging,typesetting} |
ngs-sdk | 9 | {bio-dev} |
- openslide | 9 | {imaging} |
orthanc-webviewer | 9 | {imaging} |
pixelmed | 9 | {imaging} |
plastimatch | 9 | {imaging} |
- vtk-dicom | 9 | {imaging} |
bamkit | 8 | {bio,covid-19} |
- fastlink | 8 | {bio,cloud} |
+ bio-tradis | 8 | {bio-dev,bio} |
insighttoolkit4 | 8 | {imaging-dev} |
jebl2 | 8 | {bio-dev} |
- king | 8 | {imaging,typesetting} |
+ lagan | 8 | {bio} |
+ multiqc | 8 | {bio,covid-19} |
+ openslide | 8 | {imaging} |
prime-phylo | 8 | {bio,cloud} |
rambo-k | 8 | {bio} |
treeview | 8 | {bio,bio-phylogeny} |
beast-mcmc | 7 | {bio-phylogeny,bio} |
biojava-live | 7 | {bio-dev} |
biosig | 7 | {physics,imaging} |
- bio-tradis | 7 | {bio-dev,bio} |
embassy-domsearch | 7 | {bio,cloud} |
- lagan | 7 | {bio} |
libncl | 7 | {bio} |
- multiqc | 7 | {bio,covid-19} |
+ mipe | 7 | {bio,cloud} |
nifti2dicom | 7 | {imaging} |
orthanc-dicomweb | 7 | {imaging,covid-19} |
phybin | 7 | {bio} |
@@ -59,26 +60,27 @@ Last-Update: Fri, 25 Dec 2020 01:42:03 +0000
staden | 7 | {bio} |
arden | 6 | {cloud,bio} |
bitseq | 6 | {bio} |
+ busco | 6 | {bio,covid-19} |
+ canu | 6 | {bio} |
dicompyler | 6 | {oncology} |
embassy-domalign | 6 | {bio,cloud} |
+ ipig | 6 | {bio} |
+ jellyfish1 | 6 | {bio} |
jmodeltest | 6 | {bio-phylogeny,bio} |
libpal-java | 6 | {bio-dev} |
- mipe | 6 | {bio,cloud} |
orthanc-postgresql | 6 | {imaging} |
phast | 6 | {bio} |
phyutility | 6 | {cloud,bio} |
placnet | 6 | {bio} |
+ runcircos-gui | 6 | {bio} |
saint | 6 | {bio} |
zalign | 6 | {bio,cloud} |
anfo | 5 | {cloud,bio} |
assemblytics | 5 | {bio} |
biomaj3-daemon | 5 | {bio} |
- busco | 5 | {bio,covid-19} |
ecopcr | 5 | {bio} |
fastml | 5 | {bio} |
ghmm | 5 | {bio} |
- ipig | 5 | {bio} |
- jellyfish1 | 5 | {bio} |
lamarc | 5 | {bio} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
mauve-aligner | 5 | {bio} |
@@ -87,55 +89,53 @@ Last-Update: Fri, 25 Dec 2020 01:42:03 +0000
piler | 5 | {bio} |
proalign | 5 | {bio-phylogeny,bio} |
prottest | 5 | {bio,bio-phylogeny} |
+ pscan-chip | 5 | {bio} |
+ quorum | 5 | {bio} |
rdp-classifier | 5 | {bio} |
- runcircos-gui | 5 | {bio} |
sga | 5 | {bio} |
sibsim4 | 5 | {bio,cloud} |
+ spaced | 5 | {bio} |
sprai | 5 | {bio} |
spread-phy | 5 | {bio,bio-phylogeny} |
biomaj3-cli | 4 | {cloud} |
+ blasr | 4 | {bio,bio-ngs} |
brig | 4 | {bio} |
- canu | 4 | {bio} |
clonalframeml | 4 | {bio,covid-19} |
clonalorigin | 4 | {bio} |
elastix | 4 | {imaging} |
embassy-domainatrix | 4 | {cloud,bio} |
+ estscan | 4 | {bio} |
fsm-lite | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
libminc | 4 | {imaging-dev} |
metaphlan2 | 4 | {bio} |
+ mhap | 4 | {bio-ngs,bio} |
microbegps | 4 | {bio} |
paraclu | 4 | {cloud,bio} |
perm | 4 | {cloud,bio} |
- pscan-chip | 4 | {bio} |
- quorum | 4 | {bio} |
rtax | 4 | {bio,cloud} |
soapaligner | 4 | {bio} |
soapsnp | 4 | {bio} |
- spaced | 4 | {bio} |
stacks | 4 | {bio} |
surankco | 4 | {bio} |
- yaha | 4 | {bio} |
bart-view | 3 | {imaging} |
- blasr | 3 | {bio,bio-ngs} |
delly | 3 | {covid-19,bio} |
dindel | 3 | {bio} |
- estscan | 3 | {bio} |
getdata | 3 | {bio} |
hinge | 3 | {bio} |
libsbml | 3 | {bio-dev} |
logol | 3 | {bio} |
- mhap | 3 | {bio-ngs,bio} |
qcumber | 3 | {bio} |
- samblaster | 3 | {bio,covid-19} |
segemehl | 3 | {bio} |
suitename | 3 | {bio} |
tracetuner | 3 | {bio} |
+ yaha | 3 | {bio} |
blimps | 2 | {bio} |
gatb-core | 2 | {bio} |
libctapimkt | 2 | {practice} |
libmuscle | 2 | {bio-dev} |
plasmidseeker | 2 | {bio} |
+ samblaster | 2 | {bio,covid-19} |
samtools-legacy | 2 | {bio-dev} |
sift | 2 | {bio} |
tvc | 2 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/6cf5ebad78b4a48d8ea3629802c2a551173445fb
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/6cf5ebad78b4a48d8ea3629802c2a551173445fb
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