Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
321d2a1c by Andreas Tille at 2020-12-27T13:45:15+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,67 +1,68 @@
-Last-Update: Sun, 27 Dec 2020 01:42:03 +0000
+Last-Update: Sun, 27 Dec 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 201 | {covid-19,imaging} |
- orthanc | 105 | {imaging,covid-19,practice} |
- orthanc-wsi | 58 | {his,covid-19,imaging,practice,laboratory,oncology} |
- gdcm | 44 | {imaging-dev} |
+ dcmtk | 200 | {covid-19,imaging} |
+ orthanc | 104 | {imaging,covid-19,practice} |
+ orthanc-wsi | 57 | {his,covid-19,imaging,practice,laboratory,oncology} |
+ gdcm | 45 | {imaging-dev} |
htsjdk | 33 | {bio-dev} |
- amide | 30 | {imaging} |
+ amide | 29 | {imaging} |
dicom3tools | 27 | {imaging} |
dicomscope | 22 | {imaging} |
gnumed-server | 19 | {covid-19,practice} |
invesalius | 19 | {imaging} |
odin | 17 | {imaging-dev,imaging} |
- ngs-sdk | 15 | {bio-dev} |
adun.app | 14 | {bio} |
+ dcm2niix | 14 | {imaging} |
+ gdcm | 14 | {imaging-dev} |
nifticlib | 14 | {imaging} |
- dcm2niix | 13 | {imaging} |
gdcm | 13 | {covid-19,imaging} |
- gdcm | 13 | {imaging-dev} |
minc-tools | 13 | {imaging} |
- ngs-sdk | 12 | {bio-dev} |
+ ngs-sdk | 13 | {bio-dev} |
dicomnifti | 11 | {imaging} |
obitools | 11 | {bio} |
king | 10 | {imaging,typesetting} |
librg-utils-perl | 10 | {bio} |
- melting | 10 | {cloud,bio} |
mia | 10 | {imaging} |
pixelmed | 10 | {imaging} |
plastimatch | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
ea-utils | 9 | {bio} |
fastlink | 9 | {bio,cloud} |
+ insighttoolkit4 | 9 | {imaging-dev} |
+ melting | 9 | {cloud,bio} |
openslide | 9 | {imaging} |
orthanc-webviewer | 9 | {imaging} |
bamkit | 8 | {bio,covid-19} |
biosig | 8 | {physics,imaging} |
- bio-tradis | 8 | {bio-dev,bio} |
- insighttoolkit4 | 8 | {imaging-dev} |
- jebl2 | 8 | {bio-dev} |
lagan | 8 | {bio} |
multiqc | 8 | {bio,covid-19} |
- ngs-sdk | 8 | {bio-dev} |
prime-phylo | 8 | {bio,cloud} |
rambo-k | 8 | {bio} |
treeview | 8 | {bio,bio-phylogeny} |
beast-mcmc | 7 | {bio-phylogeny,bio} |
biojava-live | 7 | {bio-dev} |
+ bio-tradis | 7 | {bio-dev,bio} |
+ dicompyler | 7 | {oncology} |
embassy-domsearch | 7 | {bio,cloud} |
+ jebl2 | 7 | {bio-dev} |
libncl | 7 | {bio} |
mipe | 7 | {bio,cloud} |
+ ngs-sdk | 7 | {bio-dev} |
nifti2dicom | 7 | {imaging} |
orthanc-dicomweb | 7 | {imaging,covid-19} |
phybin | 7 | {bio} |
+ pymia | 7 | {imaging-dev} |
rdp-alignment | 7 | {bio} |
salmon | 7 | {covid-19,bio} |
seqsero | 7 | {bio} |
staden | 7 | {bio} |
arden | 6 | {cloud,bio} |
+ biomaj3-daemon | 6 | {bio} |
bitseq | 6 | {bio} |
busco | 6 | {bio,covid-19} |
canu | 6 | {bio} |
- dicompyler | 6 | {oncology} |
embassy-domalign | 6 | {bio,cloud} |
ipig | 6 | {bio} |
jellyfish1 | 6 | {bio} |
@@ -71,13 +72,11 @@ Last-Update: Sun, 27 Dec 2020 01:42:03 +0000
phast | 6 | {bio} |
phyutility | 6 | {cloud,bio} |
placnet | 6 | {bio} |
- pymia | 6 | {imaging-dev} |
- runcircos-gui | 6 | {bio} |
saint | 6 | {bio} |
zalign | 6 | {bio,cloud} |
anfo | 5 | {cloud,bio} |
assemblytics | 5 | {bio} |
- biomaj3-daemon | 5 | {bio} |
+ biomaj3-cli | 5 | {cloud} |
ecopcr | 5 | {bio} |
fastml | 5 | {bio} |
ghmm | 5 | {bio} |
@@ -92,13 +91,13 @@ Last-Update: Sun, 27 Dec 2020 01:42:03 +0000
pscan-chip | 5 | {bio} |
quorum | 5 | {bio} |
rdp-classifier | 5 | {bio} |
+ runcircos-gui | 5 | {bio} |
sga | 5 | {bio} |
sibsim4 | 5 | {bio,cloud} |
spaced | 5 | {bio} |
sprai | 5 | {bio} |
spread-phy | 5 | {bio,bio-phylogeny} |
bart-view | 4 | {imaging} |
- biomaj3-cli | 4 | {cloud} |
blasr | 4 | {bio,bio-ngs} |
brig | 4 | {bio} |
clonalframeml | 4 | {bio,covid-19} |
@@ -107,7 +106,6 @@ Last-Update: Sun, 27 Dec 2020 01:42:03 +0000
embassy-domainatrix | 4 | {cloud,bio} |
estscan | 4 | {bio} |
fsm-lite | 4 | {bio} |
- libdivsufsort | 4 | {bio-dev} |
libminc | 4 | {imaging-dev} |
metaphlan2 | 4 | {bio} |
mhap | 4 | {bio-ngs,bio} |
@@ -123,7 +121,7 @@ Last-Update: Sun, 27 Dec 2020 01:42:03 +0000
dindel | 3 | {bio} |
getdata | 3 | {bio} |
hinge | 3 | {bio} |
- libsbml | 3 | {bio-dev} |
+ libdivsufsort | 3 | {bio-dev} |
logol | 3 | {bio} |
qcumber | 3 | {bio} |
segemehl | 3 | {bio} |
@@ -134,6 +132,7 @@ Last-Update: Sun, 27 Dec 2020 01:42:03 +0000
gatb-core | 2 | {bio} |
libctapimkt | 2 | {practice} |
libmuscle | 2 | {bio-dev} |
+ libsbml | 2 | {bio-dev} |
plasmidseeker | 2 | {bio} |
samblaster | 2 | {bio,covid-19} |
samtools-legacy | 2 | {bio-dev} |
@@ -145,6 +144,8 @@ Last-Update: Sun, 27 Dec 2020 01:42:03 +0000
emmax | 1 | {bio} |
gifticlib | 1 | {imaging-dev} |
htscodecs | 1 | {bio-dev,covid-19} |
+ libbio-mage-utils-perl | 1 | {bio-dev} |
+ libchado-perl | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
nanosv | 1 | {covid-19,bio} |
nifticlib | 1 | {imaging-dev} |
@@ -152,7 +153,6 @@ Last-Update: Sun, 27 Dec 2020 01:42:03 +0000
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
oscar | 1 | {tools,practice,data} |
- papyrus | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
pigx-rnaseq | 1 | {covid-19,bio} |
plasmidid | 1 | {bio,covid-19} |
@@ -171,8 +171,8 @@ Last-Update: Sun, 27 Dec 2020 01:42:03 +0000
bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biosig | 0 | {physics,imaging-dev} |
- biosig | 0 | {imaging-dev,physics} |
biosig | 0 | {physics} |
+ biosig | 0 | {imaging-dev,physics} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
@@ -187,7 +187,6 @@ Last-Update: Sun, 27 Dec 2020 01:42:03 +0000
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
- libbio-mage-utils-perl | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
libbpp-core | 0 | {bio-dev} |
libbpp-phyl | 0 | {bio-dev} |
@@ -196,7 +195,6 @@ Last-Update: Sun, 27 Dec 2020 01:42:03 +0000
libbpp-raa | 0 | {bio-dev} |
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
- libchado-perl | 0 | {bio-dev} |
libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
@@ -220,6 +218,7 @@ Last-Update: Sun, 27 Dec 2020 01:42:03 +0000
ncbi-vdb | 0 | {bio-dev} |
nifticlib | 0 | {imaging-dev} |
orthanc-imagej | 0 | {imaging} |
+ papyrus | 0 | {imaging-dev} |
parallel-fastq-dump | 0 | {covid-19} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
@@ -249,5 +248,5 @@ Last-Update: Sun, 27 Dec 2020 01:42:03 +0000
orthanc-python | -1 | {covid-19} |
sight | -1 | {imaging-dev} |
svim | -1 | {bio} |
-(279 rows)
+(278 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/321d2a1c0b9ce03c38f0f758a07bf3f95ef3d962
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/321d2a1c0b9ce03c38f0f758a07bf3f95ef3d962
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