Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
41067d0b by Andreas Tille at 2020-12-28T13:45:23+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,41 +1,42 @@
-Last-Update: Mon, 28 Dec 2020 01:42:03 +0000
+Last-Update: Mon, 28 Dec 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 200 | {covid-19,imaging} |
- orthanc | 104 | {imaging,covid-19,practice} |
- orthanc-wsi | 57 | {his,covid-19,imaging,practice,laboratory,oncology} |
- gdcm | 45 | {imaging-dev} |
- htsjdk | 33 | {bio-dev} |
- amide | 29 | {imaging} |
- dicom3tools | 27 | {imaging} |
+ dcmtk | 198 | {covid-19,imaging} |
+ orthanc | 100 | {imaging,covid-19,practice} |
+ orthanc-wsi | 55 | {his,covid-19,imaging,practice,laboratory,oncology} |
+ gdcm | 44 | {imaging-dev} |
+ htsjdk | 32 | {bio-dev} |
+ amide | 31 | {imaging} |
+ dicom3tools | 28 | {imaging} |
dicomscope | 22 | {imaging} |
- gnumed-server | 19 | {covid-19,practice} |
- invesalius | 19 | {imaging} |
+ invesalius | 18 | {imaging} |
+ gnumed-server | 17 | {covid-19,practice} |
odin | 17 | {imaging-dev,imaging} |
+ dcm2niix | 16 | {imaging} |
+ gdcm | 15 | {imaging-dev} |
+ nifticlib | 15 | {imaging} |
adun.app | 14 | {bio} |
- dcm2niix | 14 | {imaging} |
- gdcm | 14 | {imaging-dev} |
- nifticlib | 14 | {imaging} |
- gdcm | 13 | {covid-19,imaging} |
- minc-tools | 13 | {imaging} |
- ngs-sdk | 13 | {bio-dev} |
- dicomnifti | 11 | {imaging} |
+ gdcm | 14 | {covid-19,imaging} |
+ minc-tools | 14 | {imaging} |
+ ngs-sdk | 14 | {bio-dev} |
+ dicomnifti | 12 | {imaging} |
+ ngs-sdk | 12 | {bio-dev} |
+ mia | 11 | {imaging} |
obitools | 11 | {bio} |
+ plastimatch | 11 | {imaging} |
king | 10 | {imaging,typesetting} |
librg-utils-perl | 10 | {bio} |
- mia | 10 | {imaging} |
- pixelmed | 10 | {imaging} |
- plastimatch | 10 | {imaging} |
+ openslide | 10 | {imaging} |
vtk-dicom | 10 | {imaging} |
+ biosig | 9 | {physics,imaging} |
ea-utils | 9 | {bio} |
fastlink | 9 | {bio,cloud} |
- insighttoolkit4 | 9 | {imaging-dev} |
melting | 9 | {cloud,bio} |
- openslide | 9 | {imaging} |
orthanc-webviewer | 9 | {imaging} |
+ pixelmed | 9 | {imaging} |
bamkit | 8 | {bio,covid-19} |
- biosig | 8 | {physics,imaging} |
+ insighttoolkit4 | 8 | {imaging-dev} |
lagan | 8 | {bio} |
multiqc | 8 | {bio,covid-19} |
prime-phylo | 8 | {bio,cloud} |
@@ -76,11 +77,13 @@ Last-Update: Mon, 28 Dec 2020 01:42:03 +0000
zalign | 6 | {bio,cloud} |
anfo | 5 | {cloud,bio} |
assemblytics | 5 | {bio} |
+ bart-view | 5 | {imaging} |
biomaj3-cli | 5 | {cloud} |
ecopcr | 5 | {bio} |
fastml | 5 | {bio} |
ghmm | 5 | {bio} |
lamarc | 5 | {bio} |
+ libminc | 5 | {imaging-dev} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
mauve-aligner | 5 | {bio} |
orthanc-mysql | 5 | {imaging} |
@@ -97,7 +100,6 @@ Last-Update: Mon, 28 Dec 2020 01:42:03 +0000
spaced | 5 | {bio} |
sprai | 5 | {bio} |
spread-phy | 5 | {bio,bio-phylogeny} |
- bart-view | 4 | {imaging} |
blasr | 4 | {bio,bio-ngs} |
brig | 4 | {bio} |
clonalframeml | 4 | {bio,covid-19} |
@@ -106,7 +108,6 @@ Last-Update: Mon, 28 Dec 2020 01:42:03 +0000
embassy-domainatrix | 4 | {cloud,bio} |
estscan | 4 | {bio} |
fsm-lite | 4 | {bio} |
- libminc | 4 | {imaging-dev} |
metaphlan2 | 4 | {bio} |
mhap | 4 | {bio-ngs,bio} |
microbegps | 4 | {bio} |
@@ -124,6 +125,7 @@ Last-Update: Mon, 28 Dec 2020 01:42:03 +0000
libdivsufsort | 3 | {bio-dev} |
logol | 3 | {bio} |
qcumber | 3 | {bio} |
+ samblaster | 3 | {bio,covid-19} |
segemehl | 3 | {bio} |
suitename | 3 | {bio} |
tracetuner | 3 | {bio} |
@@ -134,7 +136,6 @@ Last-Update: Mon, 28 Dec 2020 01:42:03 +0000
libmuscle | 2 | {bio-dev} |
libsbml | 2 | {bio-dev} |
plasmidseeker | 2 | {bio} |
- samblaster | 2 | {bio,covid-19} |
samtools-legacy | 2 | {bio-dev} |
sift | 2 | {bio} |
tvc | 2 | {bio} |
@@ -142,7 +143,6 @@ Last-Update: Mon, 28 Dec 2020 01:42:03 +0000
bustools | 1 | {bio,covid-19} |
dextractor | 1 | {covid-19,bio} |
emmax | 1 | {bio} |
- gifticlib | 1 | {imaging-dev} |
htscodecs | 1 | {bio-dev,covid-19} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
@@ -159,7 +159,6 @@ Last-Update: Mon, 28 Dec 2020 01:42:03 +0000
salmid | 1 | {bio} |
seqan | 1 | {bio-dev} |
sight | 1 | {imaging} |
- simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
skewer | 1 | {bio} |
srf | 1 | {bio-dev} |
@@ -170,9 +169,9 @@ Last-Update: Mon, 28 Dec 2020 01:42:03 +0000
bambamc | 0 | {bio-dev} |
bbmap | 0 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
- biosig | 0 | {physics,imaging-dev} |
biosig | 0 | {physics} |
biosig | 0 | {imaging-dev,physics} |
+ biosig | 0 | {physics,imaging-dev} |
biosyntax | 0 | {bio} |
bmtk | 0 | {psychology} |
camp | 0 | {imaging-dev} |
@@ -183,6 +182,7 @@ Last-Update: Mon, 28 Dec 2020 01:42:03 +0000
emboss-explorer | 0 | {bio} |
fis-gtm | 0 | {his} |
gatb-core | 0 | {bio-dev} |
+ gifticlib | 0 | {imaging-dev} |
intake | 0 | {bio-dev,bio} |
kmerresistance | 0 | {bio} |
libbigwig | 0 | {bio-dev} |
@@ -225,8 +225,8 @@ Last-Update: Mon, 28 Dec 2020 01:42:03 +0000
pique | 0 | {bio} |
pplacer | 0 | {covid-19,bio,bio-phylogeny} |
python-bcbio-gff | 0 | {bio-dev} |
- python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-seqcluster | 0 | {covid-19,bio-dev} |
q2-sample-classifier | 0 | {bio,bio-dev} |
resfinder-db | 0 | {bio} |
sambamba | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/41067d0ba3d1492f8d32cadb96bc50b6323ab96b
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/41067d0ba3d1492f8d32cadb96bc50b6323ab96b
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