[med-svn] [Git][med-team/python-pbcore][master] 7 commits: Drop pyxb also from test depends

Andreas Tille gitlab at salsa.debian.org
Tue Feb 25 08:10:19 GMT 2020



Andreas Tille pushed to branch master at Debian Med / python-pbcore


Commits:
99ff6f9d by Andreas Tille at 2020-02-25T08:50:14+01:00
Drop pyxb also from test depends

- - - - -
70a1e3ee by Andreas Tille at 2020-02-25T08:52:00+01:00
New upstream version 1.7.1+git20200206.d66cbbf+dfsg
- - - - -
101757e5 by Andreas Tille at 2020-02-25T08:52:00+01:00
routine-update: New upstream version

- - - - -
2e5fddac by Andreas Tille at 2020-02-25T08:52:02+01:00
Update upstream source from tag 'upstream/1.7.1+git20200206.d66cbbf+dfsg'

Update to upstream version '1.7.1+git20200206.d66cbbf+dfsg'
with Debian dir 7b61a6f97adb694b422aa55e46eb312fb3ac7e93
- - - - -
cb00da4a by Andreas Tille at 2020-02-25T08:52:08+01:00
routine-update: Add salsa-ci file

- - - - -
d32549e4 by Andreas Tille at 2020-02-25T09:05:58+01:00
Cleanup d/changelog

- - - - -
629a1ed2 by Andreas Tille at 2020-02-25T09:09:48+01:00
Upload to unstable

- - - - -


8 changed files:

- debian/changelog
- + debian/salsa-ci.yml
- debian/tests/control
- pbcore/io/dataset/pyxb/DataSetXsd.py
- pbcore/io/dataset/pyxb/_pbbase.py
- pbcore/io/dataset/pyxb/_pbmeta.py
- pbcore/io/dataset/pyxb/_pbrk.py
- pbcore/io/dataset/pyxb/_pbsample.py


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+python-pbcore (1.7.1+git20200206.d66cbbf+dfsg-1) unstable; urgency=medium
+
+  [ Gianfranco Costamagna ]
+  * Drop pyxb also from test depends (Closes: #950336)
+
+  [ Andreas Tille ]
+  * New upstream version
+  * Add salsa-ci file (routine-update)
+
+ -- Andreas Tille <tille at debian.org>  Tue, 25 Feb 2020 09:06:14 +0100
+
 python-pbcore (1.7.1+git20200129.c55621e+dfsg-1) unstable; urgency=medium
 
   * Remove python3-pyxb from Build-Depends


=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+  - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml


=====================================
debian/tests/control
=====================================
@@ -1,3 +1,3 @@
 Tests: run-unit-test
-Depends: @, python3-pytest, python3-pyxb, python3-pytest-runner, python3-pytest-xdist, python3-pytest-cov
+Depends: @, python3-pytest, python3-pytest-runner, python3-pytest-xdist, python3-pytest-cov
 Restrictions: allow-stderr


=====================================
pbcore/io/dataset/pyxb/DataSetXsd.py
=====================================
The diff for this file was not included because it is too large.

=====================================
pbcore/io/dataset/pyxb/_pbbase.py
=====================================
The diff for this file was not included because it is too large.

=====================================
pbcore/io/dataset/pyxb/_pbmeta.py
=====================================
The diff for this file was not included because it is too large.

=====================================
pbcore/io/dataset/pyxb/_pbrk.py
=====================================
The diff for this file was not included because it is too large.

=====================================
pbcore/io/dataset/pyxb/_pbsample.py
=====================================
@@ -1,12 +1,10 @@
 # pbcore/io/dataset/pyxb/_pbsample.py
 # -*- coding: utf-8 -*-
 # PyXB bindings for NM:a7c0866985dba806fe3112e9fbc4707c9f978443
-# Generated 2019-11-05 15:31:34.025710 by PyXB version 1.2.6 using Python 3.7.3.final.0
+# Generated 2020-02-06 10:10:19.700747 by PyXB version 1.2.6 using Python 3.7.3.final.0
 # Namespace http://pacificbiosciences.com/PacBioSampleInfo.xsd [xmlns:pbsample]
 
 from __future__ import unicode_literals
-import _pbbase as _ImportedBinding__pbbase
-import pyxb.binding.datatypes
 import pyxb
 import pyxb.binding
 import pyxb.binding.saxer
@@ -16,8 +14,7 @@ import pyxb.utils.domutils
 import sys
 import pyxb.utils.six as _six
 # Unique identifier for bindings created at the same time
-_GenerationUID = pyxb.utils.utility.UniqueIdentifier(
-    'urn:uuid:670030a8-0024-11ea-b259-0026b9fe0aec')
+_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:ef0acb54-490b-11ea-a47b-005056875d19')
 
 # Version of PyXB used to generate the bindings
 _PyXBVersion = '1.2.6'
@@ -30,16 +27,16 @@ if pyxb.__version__ != _PyXBVersion:
 _module_typeBindings = pyxb.utils.utility.Object()
 
 # Import bindings for namespaces imported into schema
+import pyxb.binding.datatypes
+import _pbbase as _ImportedBinding__pbbase
 
 # NOTE: All namespace declarations are reserved within the binding
-Namespace = pyxb.namespace.NamespaceForURI(
-    'http://pacificbiosciences.com/PacBioSampleInfo.xsd', create_if_missing=True)
+Namespace = pyxb.namespace.NamespaceForURI('http://pacificbiosciences.com/PacBioSampleInfo.xsd', create_if_missing=True)
 Namespace.configureCategories(['typeBinding', 'elementBinding'])
 _Namespace_pbbase = _ImportedBinding__pbbase.Namespace
 _Namespace_pbbase.configureCategories(['typeBinding', 'elementBinding'])
 
-
-def CreateFromDocument(xml_text, default_namespace=None, location_base=None):
+def CreateFromDocument (xml_text, default_namespace=None, location_base=None):
     """Parse the given XML and use the document element to create a
     Python instance.
 
@@ -63,8 +60,7 @@ def CreateFromDocument(xml_text, default_namespace=None, location_base=None):
         return CreateFromDOM(dom.documentElement, default_namespace=default_namespace)
     if default_namespace is None:
         default_namespace = Namespace.fallbackNamespace()
-    saxer = pyxb.binding.saxer.make_parser(
-        fallback_namespace=default_namespace, location_base=location_base)
+    saxer = pyxb.binding.saxer.make_parser(fallback_namespace=default_namespace, location_base=location_base)
     handler = saxer.getContentHandler()
     xmld = xml_text
     if isinstance(xmld, _six.text_type):
@@ -73,8 +69,7 @@ def CreateFromDocument(xml_text, default_namespace=None, location_base=None):
     instance = handler.rootObject()
     return instance
 
-
-def CreateFromDOM(node, default_namespace=None):
+def CreateFromDOM (node, default_namespace=None):
     """Create a Python instance from the given DOM node.
     The node tag must correspond to an element declaration in this module.
 
@@ -91,35 +86,31 @@ class CTD_ANON (pyxb.binding.basis.complexTypeDefinition):
     _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
     _Abstract = False
     _ExpandedName = None
-    _XSDLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 96, 2)
+    _XSDLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 96, 2)
     _ElementMap = {}
     _AttributeMap = {}
     # Base type is pyxb.binding.datatypes.anyType
-
+    
     # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BioSamplePointer uses Python identifier BioSamplePointer
-    __BioSamplePointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(
-        Namespace, 'BioSamplePointer'), 'BioSamplePointer', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_httppacificbiosciences_comPacBioSampleInfo_xsdBioSamplePointer', False, pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 103, 5), )
+    __BioSamplePointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer'), 'BioSamplePointer', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_httppacificbiosciences_comPacBioSampleInfo_xsdBioSamplePointer', False, pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 103, 5), )
 
-    BioSamplePointer = property(
-        __BioSamplePointer.value, __BioSamplePointer.set, None, 'Pointer to a single biological sample')
+    
+    BioSamplePointer = property(__BioSamplePointer.value, __BioSamplePointer.set, None, 'Pointer to a single biological sample')
 
+    
     # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BarcodedSamplePointers uses Python identifier BarcodedSamplePointers
-    __BarcodedSamplePointers = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), 'BarcodedSamplePointers',
-                                                                       '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_httppacificbiosciences_comPacBioSampleInfo_xsdBarcodedSamplePointers', False, pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 112, 1), )
+    __BarcodedSamplePointers = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), 'BarcodedSamplePointers', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_httppacificbiosciences_comPacBioSampleInfo_xsdBarcodedSamplePointers', False, pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 112, 1), )
 
-    BarcodedSamplePointers = property(__BarcodedSamplePointers.value, __BarcodedSamplePointers.set,
-                                      None, 'Back references to other BarcodedSampleType object UniqueIds which utilize this sample')
+    
+    BarcodedSamplePointers = property(__BarcodedSamplePointers.value, __BarcodedSamplePointers.set, None, 'Back references to other BarcodedSampleType object UniqueIds which utilize this sample')
 
     _ElementMap.update({
-        __BioSamplePointer.name(): __BioSamplePointer,
-        __BarcodedSamplePointers.name(): __BarcodedSamplePointers
+        __BioSamplePointer.name() : __BioSamplePointer,
+        __BarcodedSamplePointers.name() : __BarcodedSamplePointers
     })
     _AttributeMap.update({
-
+        
     })
-
-
 _module_typeBindings.CTD_ANON = CTD_ANON
 
 
@@ -130,27 +121,23 @@ class CTD_ANON_ (pyxb.binding.basis.complexTypeDefinition):
     _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
     _Abstract = False
     _ExpandedName = None
-    _XSDLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 116, 2)
+    _XSDLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 116, 2)
     _ElementMap = {}
     _AttributeMap = {}
     # Base type is pyxb.binding.datatypes.anyType
-
+    
     # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BarcodedSamplePointer uses Python identifier BarcodedSamplePointer
-    __BarcodedSamplePointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer'), 'BarcodedSamplePointer',
-                                                                      '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON__httppacificbiosciences_comPacBioSampleInfo_xsdBarcodedSamplePointer', True, pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 118, 4), )
+    __BarcodedSamplePointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer'), 'BarcodedSamplePointer', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON__httppacificbiosciences_comPacBioSampleInfo_xsdBarcodedSamplePointer', True, pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 118, 4), )
 
-    BarcodedSamplePointer = property(
-        __BarcodedSamplePointer.value, __BarcodedSamplePointer.set, None, 'Pointer to a group of barcoded samples')
+    
+    BarcodedSamplePointer = property(__BarcodedSamplePointer.value, __BarcodedSamplePointer.set, None, 'Pointer to a group of barcoded samples')
 
     _ElementMap.update({
-        __BarcodedSamplePointer.name(): __BarcodedSamplePointer
+        __BarcodedSamplePointer.name() : __BarcodedSamplePointer
     })
     _AttributeMap.update({
-
+        
     })
-
-
 _module_typeBindings.CTD_ANON_ = CTD_ANON_
 
 
@@ -161,27 +148,23 @@ class CTD_ANON_2 (pyxb.binding.basis.complexTypeDefinition):
     _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
     _Abstract = False
     _ExpandedName = None
-    _XSDLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 130, 2)
+    _XSDLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 130, 2)
     _ElementMap = {}
     _AttributeMap = {}
     # Base type is pyxb.binding.datatypes.anyType
-
+    
     # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BioSample uses Python identifier BioSample
-    __BioSample = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(
-        Namespace, 'BioSample'), 'BioSample', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioSampleInfo_xsdBioSample', True, pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 136, 1), )
+    __BioSample = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), 'BioSample', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioSampleInfo_xsdBioSample', True, pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 136, 1), )
 
-    BioSample = property(__BioSample.value, __BioSample.set,
-                         None, 'An individual biological sample.')
+    
+    BioSample = property(__BioSample.value, __BioSample.set, None, 'An individual biological sample.')
 
     _ElementMap.update({
-        __BioSample.name(): __BioSample
+        __BioSample.name() : __BioSample
     })
     _AttributeMap.update({
-
+        
     })
-
-
 _module_typeBindings.CTD_ANON_2 = CTD_ANON_2
 
 
@@ -192,176 +175,139 @@ class BioSampleType (_ImportedBinding__pbbase.BaseEntityType):
     _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
     _Abstract = False
     _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'BioSampleType')
-    _XSDLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 8, 1)
+    _XSDLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 8, 1)
     _ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy()
     _AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy()
     # Base type is _ImportedBinding__pbbase.BaseEntityType
-
+    
     # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}DNABarcodes uses Python identifier DNABarcodes
-    __DNABarcodes = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(
-        Namespace, 'DNABarcodes'), 'DNABarcodes', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_httppacificbiosciences_comPacBioSampleInfo_xsdDNABarcodes', False, pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 15, 5), )
+    __DNABarcodes = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DNABarcodes'), 'DNABarcodes', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_httppacificbiosciences_comPacBioSampleInfo_xsdDNABarcodes', False, pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 15, 5), )
 
-    DNABarcodes = property(__DNABarcodes.value, __DNABarcodes.set,
-                           None, 'A list of barcodes associated with the biological sample')
+    
+    DNABarcodes = property(__DNABarcodes.value, __DNABarcodes.set, None, 'A list of barcodes associated with the biological sample')
 
+    
     # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Attribute DateReceived uses Python identifier DateReceived
-    __DateReceived = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
-        None, 'DateReceived'), 'DateReceived', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_DateReceived', pyxb.binding.datatypes.dateTime)
-    __DateReceived._DeclarationLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 34, 4)
-    __DateReceived._UseLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 34, 4)
-
-    DateReceived = property(__DateReceived.value, __DateReceived.set,
-                            None, 'Date the sample was received by the lab')
+    __DateReceived = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'DateReceived'), 'DateReceived', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_DateReceived', pyxb.binding.datatypes.dateTime)
+    __DateReceived._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 34, 4)
+    __DateReceived._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 34, 4)
+    
+    DateReceived = property(__DateReceived.value, __DateReceived.set, None, 'Date the sample was received by the lab')
 
+    
     # Attribute Organism uses Python identifier Organism
-    __Organism = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
-        None, 'Organism'), 'Organism', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Organism', pyxb.binding.datatypes.string)
-    __Organism._DeclarationLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 39, 4)
-    __Organism._UseLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 39, 4)
-
-    Organism = property(__Organism.value, __Organism.set,
-                        None, 'e.g. HIV, E.coli')
+    __Organism = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Organism'), 'Organism', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Organism', pyxb.binding.datatypes.string)
+    __Organism._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 39, 4)
+    __Organism._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 39, 4)
+    
+    Organism = property(__Organism.value, __Organism.set, None, 'e.g. HIV, E.coli')
 
+    
     # Attribute Reference uses Python identifier Reference
-    __Reference = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
-        None, 'Reference'), 'Reference', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Reference', pyxb.binding.datatypes.string)
-    __Reference._DeclarationLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 44, 4)
-    __Reference._UseLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 44, 4)
-
-    Reference = property(__Reference.value, __Reference.set, None,
-                         'Name of reference, or pointer to one at e.g. NCBI RefSeq')
+    __Reference = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Reference'), 'Reference', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Reference', pyxb.binding.datatypes.string)
+    __Reference._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 44, 4)
+    __Reference._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 44, 4)
+    
+    Reference = property(__Reference.value, __Reference.set, None, 'Name of reference, or pointer to one at e.g. NCBI RefSeq')
 
+    
     # Attribute DNAType uses Python identifier DNAType
-    __DNAType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
-        None, 'DNAType'), 'DNAType', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_DNAType', pyxb.binding.datatypes.string)
-    __DNAType._DeclarationLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 49, 4)
-    __DNAType._UseLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 49, 4)
-
-    DNAType = property(__DNAType.value, __DNAType.set, None,
-                       'shotgun library, amplicon, etc.')
+    __DNAType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'DNAType'), 'DNAType', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_DNAType', pyxb.binding.datatypes.string)
+    __DNAType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 49, 4)
+    __DNAType._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 49, 4)
+    
+    DNAType = property(__DNAType.value, __DNAType.set, None, 'shotgun library, amplicon, etc.')
 
+    
     # Attribute Concentration uses Python identifier Concentration
-    __Concentration = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
-        None, 'Concentration'), 'Concentration', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Concentration', pyxb.binding.datatypes.float)
-    __Concentration._DeclarationLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 54, 4)
-    __Concentration._UseLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 54, 4)
-
-    Concentration = property(__Concentration.value,
-                             __Concentration.set, None, 'in ng/uL, e.g. 250')
+    __Concentration = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Concentration'), 'Concentration', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Concentration', pyxb.binding.datatypes.float)
+    __Concentration._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 54, 4)
+    __Concentration._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 54, 4)
+    
+    Concentration = property(__Concentration.value, __Concentration.set, None, 'in ng/uL, e.g. 250')
 
+    
     # Attribute QuantificationMethod uses Python identifier QuantificationMethod
-    __QuantificationMethod = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
-        None, 'QuantificationMethod'), 'QuantificationMethod', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_QuantificationMethod', pyxb.binding.datatypes.string)
-    __QuantificationMethod._DeclarationLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 59, 4)
-    __QuantificationMethod._UseLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 59, 4)
-
-    QuantificationMethod = property(
-        __QuantificationMethod.value, __QuantificationMethod.set, None, 'e.g. Qubit')
+    __QuantificationMethod = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'QuantificationMethod'), 'QuantificationMethod', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_QuantificationMethod', pyxb.binding.datatypes.string)
+    __QuantificationMethod._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 59, 4)
+    __QuantificationMethod._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 59, 4)
+    
+    QuantificationMethod = property(__QuantificationMethod.value, __QuantificationMethod.set, None, 'e.g. Qubit')
 
+    
     # Attribute SMRTBellConcentration uses Python identifier SMRTBellConcentration
-    __SMRTBellConcentration = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
-        None, 'SMRTBellConcentration'), 'SMRTBellConcentration', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SMRTBellConcentration', pyxb.binding.datatypes.float)
-    __SMRTBellConcentration._DeclarationLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 64, 4)
-    __SMRTBellConcentration._UseLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 64, 4)
-
-    SMRTBellConcentration = property(
-        __SMRTBellConcentration.value, __SMRTBellConcentration.set, None, 'in ng/uL, e.g. 4.5')
+    __SMRTBellConcentration = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SMRTBellConcentration'), 'SMRTBellConcentration', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SMRTBellConcentration', pyxb.binding.datatypes.float)
+    __SMRTBellConcentration._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 64, 4)
+    __SMRTBellConcentration._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 64, 4)
+    
+    SMRTBellConcentration = property(__SMRTBellConcentration.value, __SMRTBellConcentration.set, None, 'in ng/uL, e.g. 4.5')
 
+    
     # Attribute SMRTBellQuantificationMethod uses Python identifier SMRTBellQuantificationMethod
-    __SMRTBellQuantificationMethod = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
-        None, 'SMRTBellQuantificationMethod'), 'SMRTBellQuantificationMethod', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SMRTBellQuantificationMethod', pyxb.binding.datatypes.string)
-    __SMRTBellQuantificationMethod._DeclarationLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 69, 4)
-    __SMRTBellQuantificationMethod._UseLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 69, 4)
-
-    SMRTBellQuantificationMethod = property(
-        __SMRTBellQuantificationMethod.value, __SMRTBellQuantificationMethod.set, None, 'e.g. Qubit')
+    __SMRTBellQuantificationMethod = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SMRTBellQuantificationMethod'), 'SMRTBellQuantificationMethod', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SMRTBellQuantificationMethod', pyxb.binding.datatypes.string)
+    __SMRTBellQuantificationMethod._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 69, 4)
+    __SMRTBellQuantificationMethod._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 69, 4)
+    
+    SMRTBellQuantificationMethod = property(__SMRTBellQuantificationMethod.value, __SMRTBellQuantificationMethod.set, None, 'e.g. Qubit')
 
+    
     # Attribute BufferName uses Python identifier BufferName
-    __BufferName = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
-        None, 'BufferName'), 'BufferName', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_BufferName', pyxb.binding.datatypes.string)
-    __BufferName._DeclarationLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 74, 4)
-    __BufferName._UseLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 74, 4)
-
-    BufferName = property(__BufferName.value,
-                          __BufferName.set, None, 'e.g. Tris HCl')
+    __BufferName = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'BufferName'), 'BufferName', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_BufferName', pyxb.binding.datatypes.string)
+    __BufferName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 74, 4)
+    __BufferName._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 74, 4)
+    
+    BufferName = property(__BufferName.value, __BufferName.set, None, 'e.g. Tris HCl')
 
+    
     # Attribute SamplePrepKit uses Python identifier SamplePrepKit
-    __SamplePrepKit = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
-        None, 'SamplePrepKit'), 'SamplePrepKit', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SamplePrepKit', pyxb.binding.datatypes.string)
-    __SamplePrepKit._DeclarationLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 79, 4)
-    __SamplePrepKit._UseLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 79, 4)
-
-    SamplePrepKit = property(
-        __SamplePrepKit.value, __SamplePrepKit.set, None, 'e.g. SMRTbell Template Prep Kit')
+    __SamplePrepKit = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SamplePrepKit'), 'SamplePrepKit', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SamplePrepKit', pyxb.binding.datatypes.string)
+    __SamplePrepKit._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 79, 4)
+    __SamplePrepKit._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 79, 4)
+    
+    SamplePrepKit = property(__SamplePrepKit.value, __SamplePrepKit.set, None, 'e.g. SMRTbell Template Prep Kit')
 
+    
     # Attribute TargetLibrarySize uses Python identifier TargetLibrarySize
-    __TargetLibrarySize = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
-        None, 'TargetLibrarySize'), 'TargetLibrarySize', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_TargetLibrarySize', pyxb.binding.datatypes.string)
-    __TargetLibrarySize._DeclarationLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 84, 4)
-    __TargetLibrarySize._UseLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 84, 4)
-
-    TargetLibrarySize = property(
-        __TargetLibrarySize.value, __TargetLibrarySize.set, None, '2000, 10000, 20000')
+    __TargetLibrarySize = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'TargetLibrarySize'), 'TargetLibrarySize', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_TargetLibrarySize', pyxb.binding.datatypes.string)
+    __TargetLibrarySize._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 84, 4)
+    __TargetLibrarySize._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 84, 4)
+    
+    TargetLibrarySize = property(__TargetLibrarySize.value, __TargetLibrarySize.set, None, '2000, 10000, 20000')
 
     _ElementMap.update({
-        __DNABarcodes.name(): __DNABarcodes
+        __DNABarcodes.name() : __DNABarcodes
     })
     _AttributeMap.update({
-        __DateReceived.name(): __DateReceived,
-        __Organism.name(): __Organism,
-        __Reference.name(): __Reference,
-        __DNAType.name(): __DNAType,
-        __Concentration.name(): __Concentration,
-        __QuantificationMethod.name(): __QuantificationMethod,
-        __SMRTBellConcentration.name(): __SMRTBellConcentration,
-        __SMRTBellQuantificationMethod.name(): __SMRTBellQuantificationMethod,
-        __BufferName.name(): __BufferName,
-        __SamplePrepKit.name(): __SamplePrepKit,
-        __TargetLibrarySize.name(): __TargetLibrarySize
+        __DateReceived.name() : __DateReceived,
+        __Organism.name() : __Organism,
+        __Reference.name() : __Reference,
+        __DNAType.name() : __DNAType,
+        __Concentration.name() : __Concentration,
+        __QuantificationMethod.name() : __QuantificationMethod,
+        __SMRTBellConcentration.name() : __SMRTBellConcentration,
+        __SMRTBellQuantificationMethod.name() : __SMRTBellQuantificationMethod,
+        __BufferName.name() : __BufferName,
+        __SamplePrepKit.name() : __SamplePrepKit,
+        __TargetLibrarySize.name() : __TargetLibrarySize
     })
-
-
 _module_typeBindings.BioSampleType = BioSampleType
 Namespace.addCategoryObject('typeBinding', 'BioSampleType', BioSampleType)
 
@@ -373,76 +319,63 @@ class CTD_ANON_3 (_ImportedBinding__pbbase.BaseEntityType):
     _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
     _Abstract = False
     _ExpandedName = None
-    _XSDLocation = pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 19, 6)
+    _XSDLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 19, 6)
     _ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy()
     _AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy()
     # Base type is _ImportedBinding__pbbase.BaseEntityType
-
+    
     # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}DNABarcode uses Python identifier DNABarcode
-    __DNABarcode = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(
-        Namespace, 'DNABarcode'), 'DNABarcode', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioSampleInfo_xsdDNABarcode', True, pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 23, 10), )
+    __DNABarcode = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DNABarcode'), 'DNABarcode', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioSampleInfo_xsdDNABarcode', True, pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 23, 10), )
 
-    DNABarcode = property(__DNABarcode.value, __DNABarcode.set, None,
-                          'A sequence of barcodes associated with the biological sample')
+    
+    DNABarcode = property(__DNABarcode.value, __DNABarcode.set, None, 'A sequence of barcodes associated with the biological sample')
 
+    
     # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+    
     # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
     _ElementMap.update({
-        __DNABarcode.name(): __DNABarcode
+        __DNABarcode.name() : __DNABarcode
     })
     _AttributeMap.update({
-
+        
     })
-
-
 _module_typeBindings.CTD_ANON_3 = CTD_ANON_3
 
 
-BioSamplePointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointers'), CTD_ANON,
-                                               documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 92, 1))
-Namespace.addCategoryObject(
-    'elementBinding', BioSamplePointers.name().localName(), BioSamplePointers)
+BioSamplePointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointers'), CTD_ANON, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 92, 1))
+Namespace.addCategoryObject('elementBinding', BioSamplePointers.name().localName(), BioSamplePointers)
 
-BarcodedSamplePointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), CTD_ANON_,
-                                                    documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 112, 1))
-Namespace.addCategoryObject('elementBinding', BarcodedSamplePointers.name(
-).localName(), BarcodedSamplePointers)
+BarcodedSamplePointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), CTD_ANON_, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 112, 1))
+Namespace.addCategoryObject('elementBinding', BarcodedSamplePointers.name().localName(), BarcodedSamplePointers)
 
-BioSamples = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamples'), CTD_ANON_2,
-                                        documentation='List of biological samples.', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 126, 1))
-Namespace.addCategoryObject(
-    'elementBinding', BioSamples.name().localName(), BioSamples)
+BioSamples = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamples'), CTD_ANON_2, documentation='List of biological samples.', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 126, 1))
+Namespace.addCategoryObject('elementBinding', BioSamples.name().localName(), BioSamples)
 
-BioSample = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), BioSampleType,
-                                       documentation='An individual biological sample.', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 136, 1))
-Namespace.addCategoryObject(
-    'elementBinding', BioSample.name().localName(), BioSample)
+BioSample = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), BioSampleType, documentation='An individual biological sample.', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 136, 1))
+Namespace.addCategoryObject('elementBinding', BioSample.name().localName(), BioSample)
 
 
-CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON,
-                                                documentation='Pointer to a single biological sample', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 103, 5)))
 
-CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), CTD_ANON_, scope=CTD_ANON,
-                                                documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 112, 1)))
+CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON, documentation='Pointer to a single biological sample', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 103, 5)))
 
+CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), CTD_ANON_, scope=CTD_ANON, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 112, 1)))
 
-def _BuildAutomaton():
+def _BuildAutomaton ():
     # Remove this helper function from the namespace after it is invoked
     global _BuildAutomaton
     del _BuildAutomaton
@@ -451,32 +384,26 @@ def _BuildAutomaton():
     counters = set()
     states = []
     final_update = set()
-    symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(
-        Namespace, 'BarcodedSamplePointers')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 102, 5))
-    st_0 = fac.State(symbol, is_initial=True,
-                     final_update=final_update, is_unordered_catenation=False)
+    symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 102, 5))
+    st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
     states.append(st_0)
     final_update = set()
-    symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(
-        Namespace, 'BioSamplePointer')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 103, 5))
-    st_1 = fac.State(symbol, is_initial=True,
-                     final_update=final_update, is_unordered_catenation=False)
+    symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 103, 5))
+    st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
     states.append(st_1)
     transitions = []
     st_0._set_transitionSet(transitions)
     transitions = []
     st_1._set_transitionSet(transitions)
     return fac.Automaton(states, counters, False, containing_state=None)
-
-
 CTD_ANON._Automaton = _BuildAutomaton()
 
 
-CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_,
-                                                 documentation='Pointer to a group of barcoded samples', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 118, 4)))
 
 
-def _BuildAutomaton_():
+CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_, documentation='Pointer to a group of barcoded samples', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 118, 4)))
+
+def _BuildAutomaton_ ():
     # Remove this helper function from the namespace after it is invoked
     global _BuildAutomaton_
     del _BuildAutomaton_
@@ -485,26 +412,22 @@ def _BuildAutomaton_():
     counters = set()
     states = []
     final_update = set()
-    symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(
-        Namespace, 'BarcodedSamplePointer')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 118, 4))
-    st_0 = fac.State(symbol, is_initial=True,
-                     final_update=final_update, is_unordered_catenation=False)
+    symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 118, 4))
+    st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
     states.append(st_0)
     transitions = []
     transitions.append(fac.Transition(st_0, [
-    ]))
+         ]))
     st_0._set_transitionSet(transitions)
     return fac.Automaton(states, counters, False, containing_state=None)
-
-
 CTD_ANON_._Automaton = _BuildAutomaton_()
 
 
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), BioSampleType, scope=CTD_ANON_2,
-                                                  documentation='An individual biological sample.', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 136, 1)))
 
 
-def _BuildAutomaton_2():
+CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), BioSampleType, scope=CTD_ANON_2, documentation='An individual biological sample.', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 136, 1)))
+
+def _BuildAutomaton_2 ():
     # Remove this helper function from the namespace after it is invoked
     global _BuildAutomaton_2
     del _BuildAutomaton_2
@@ -513,129 +436,109 @@ def _BuildAutomaton_2():
     counters = set()
     states = []
     final_update = set()
-    symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(
-        Namespace, 'BioSample')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 132, 4))
-    st_0 = fac.State(symbol, is_initial=True,
-                     final_update=final_update, is_unordered_catenation=False)
+    symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSample')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 132, 4))
+    st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
     states.append(st_0)
     transitions = []
     transitions.append(fac.Transition(st_0, [
-    ]))
+         ]))
     st_0._set_transitionSet(transitions)
     return fac.Automaton(states, counters, False, containing_state=None)
-
-
 CTD_ANON_2._Automaton = _BuildAutomaton_2()
 
 
-BioSampleType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DNABarcodes'), CTD_ANON_3, scope=BioSampleType,
-                                                     documentation='A list of barcodes associated with the biological sample', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 15, 5)))
 
 
-def _BuildAutomaton_3():
+BioSampleType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DNABarcodes'), CTD_ANON_3, scope=BioSampleType, documentation='A list of barcodes associated with the biological sample', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 15, 5)))
+
+def _BuildAutomaton_3 ():
     # Remove this helper function from the namespace after it is invoked
     global _BuildAutomaton_3
     del _BuildAutomaton_3
     import pyxb.utils.fac as fac
 
     counters = set()
-    cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioBaseDataModel.xsd', 98, 3))
+    cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioBaseDataModel.xsd', 98, 3))
     counters.add(cc_0)
-    cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 15, 5))
+    cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 15, 5))
     counters.add(cc_1)
     states = []
     final_update = set()
     final_update.add(fac.UpdateInstruction(cc_0, False))
-    symbol = pyxb.binding.content.ElementUse(BioSampleType._UseForTag(pyxb.namespace.ExpandedName(
-        _Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioBaseDataModel.xsd', 98, 3))
-    st_0 = fac.State(symbol, is_initial=True,
-                     final_update=final_update, is_unordered_catenation=False)
+    symbol = pyxb.binding.content.ElementUse(BioSampleType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioBaseDataModel.xsd', 98, 3))
+    st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
     states.append(st_0)
     final_update = set()
     final_update.add(fac.UpdateInstruction(cc_1, False))
-    symbol = pyxb.binding.content.ElementUse(BioSampleType._UseForTag(pyxb.namespace.ExpandedName(
-        Namespace, 'DNABarcodes')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 15, 5))
-    st_1 = fac.State(symbol, is_initial=True,
-                     final_update=final_update, is_unordered_catenation=False)
+    symbol = pyxb.binding.content.ElementUse(BioSampleType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DNABarcodes')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 15, 5))
+    st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
     states.append(st_1)
     transitions = []
     transitions.append(fac.Transition(st_0, [
-        fac.UpdateInstruction(cc_0, True)]))
+        fac.UpdateInstruction(cc_0, True) ]))
     transitions.append(fac.Transition(st_1, [
-        fac.UpdateInstruction(cc_0, False)]))
+        fac.UpdateInstruction(cc_0, False) ]))
     st_0._set_transitionSet(transitions)
     transitions = []
     transitions.append(fac.Transition(st_1, [
-        fac.UpdateInstruction(cc_1, True)]))
+        fac.UpdateInstruction(cc_1, True) ]))
     st_1._set_transitionSet(transitions)
     return fac.Automaton(states, counters, True, containing_state=None)
-
-
 BioSampleType._Automaton = _BuildAutomaton_3()
 
 
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DNABarcode'), _ImportedBinding__pbbase.DNABarcode, scope=CTD_ANON_3,
-                                                  documentation='A sequence of barcodes associated with the biological sample', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 23, 10)))
 
 
-def _BuildAutomaton_4():
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DNABarcode'), _ImportedBinding__pbbase.DNABarcode, scope=CTD_ANON_3, documentation='A sequence of barcodes associated with the biological sample', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 23, 10)))
+
+def _BuildAutomaton_4 ():
     # Remove this helper function from the namespace after it is invoked
     global _BuildAutomaton_4
     del _BuildAutomaton_4
     import pyxb.utils.fac as fac
 
     counters = set()
-    cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 19, 6))
+    cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 19, 6))
     counters.add(cc_0)
-    cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioBaseDataModel.xsd', 98, 3))
+    cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioBaseDataModel.xsd', 98, 3))
     counters.add(cc_1)
-    cc_2 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location(
-        '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 23, 10))
+    cc_2 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 23, 10))
     counters.add(cc_2)
     states = []
     final_update = set()
     final_update.add(fac.UpdateInstruction(cc_0, False))
     final_update.add(fac.UpdateInstruction(cc_1, False))
-    symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(
-        _Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioBaseDataModel.xsd', 98, 3))
-    st_0 = fac.State(symbol, is_initial=True,
-                     final_update=final_update, is_unordered_catenation=False)
+    symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioBaseDataModel.xsd', 98, 3))
+    st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
     states.append(st_0)
     final_update = set()
     final_update.add(fac.UpdateInstruction(cc_0, False))
     final_update.add(fac.UpdateInstruction(cc_2, False))
-    symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(
-        Namespace, 'DNABarcode')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 23, 10))
-    st_1 = fac.State(symbol, is_initial=True,
-                     final_update=final_update, is_unordered_catenation=False)
+    symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DNABarcode')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 23, 10))
+    st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
     states.append(st_1)
     transitions = []
     transitions.append(fac.Transition(st_0, [
         fac.UpdateInstruction(cc_0, True),
-        fac.UpdateInstruction(cc_1, False)]))
+        fac.UpdateInstruction(cc_1, False) ]))
     transitions.append(fac.Transition(st_0, [
-        fac.UpdateInstruction(cc_1, True)]))
+        fac.UpdateInstruction(cc_1, True) ]))
     transitions.append(fac.Transition(st_1, [
         fac.UpdateInstruction(cc_0, True),
-        fac.UpdateInstruction(cc_1, False)]))
+        fac.UpdateInstruction(cc_1, False) ]))
     transitions.append(fac.Transition(st_1, [
-        fac.UpdateInstruction(cc_1, False)]))
+        fac.UpdateInstruction(cc_1, False) ]))
     st_0._set_transitionSet(transitions)
     transitions = []
     transitions.append(fac.Transition(st_0, [
         fac.UpdateInstruction(cc_0, True),
-        fac.UpdateInstruction(cc_2, False)]))
+        fac.UpdateInstruction(cc_2, False) ]))
     transitions.append(fac.Transition(st_1, [
         fac.UpdateInstruction(cc_0, True),
-        fac.UpdateInstruction(cc_2, False)]))
+        fac.UpdateInstruction(cc_2, False) ]))
     transitions.append(fac.Transition(st_1, [
-        fac.UpdateInstruction(cc_2, True)]))
+        fac.UpdateInstruction(cc_2, True) ]))
     st_1._set_transitionSet(transitions)
     return fac.Automaton(states, counters, True, containing_state=None)
-
-
 CTD_ANON_3._Automaton = _BuildAutomaton_4()
+



View it on GitLab: https://salsa.debian.org/med-team/python-pbcore/-/compare/1419506d734681c2a63149dfd8f28c2ce74cf694...629a1ed264620e4cf78f3f14f666c44678cc3e72

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View it on GitLab: https://salsa.debian.org/med-team/python-pbcore/-/compare/1419506d734681c2a63149dfd8f28c2ce74cf694...629a1ed264620e4cf78f3f14f666c44678cc3e72
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