[med-svn] [Git][med-team/python-pbcore][upstream] New upstream version 1.7.1+git20200206.d66cbbf+dfsg
Andreas Tille
gitlab at salsa.debian.org
Tue Feb 25 08:10:29 GMT 2020
Andreas Tille pushed to branch upstream at Debian Med / python-pbcore
Commits:
70a1e3ee by Andreas Tille at 2020-02-25T08:52:00+01:00
New upstream version 1.7.1+git20200206.d66cbbf+dfsg
- - - - -
5 changed files:
- pbcore/io/dataset/pyxb/DataSetXsd.py
- pbcore/io/dataset/pyxb/_pbbase.py
- pbcore/io/dataset/pyxb/_pbmeta.py
- pbcore/io/dataset/pyxb/_pbrk.py
- pbcore/io/dataset/pyxb/_pbsample.py
Changes:
=====================================
pbcore/io/dataset/pyxb/DataSetXsd.py
=====================================
The diff for this file was not included because it is too large.
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pbcore/io/dataset/pyxb/_pbbase.py
=====================================
The diff for this file was not included because it is too large.
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pbcore/io/dataset/pyxb/_pbmeta.py
=====================================
The diff for this file was not included because it is too large.
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pbcore/io/dataset/pyxb/_pbrk.py
=====================================
The diff for this file was not included because it is too large.
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pbcore/io/dataset/pyxb/_pbsample.py
=====================================
@@ -1,12 +1,10 @@
# pbcore/io/dataset/pyxb/_pbsample.py
# -*- coding: utf-8 -*-
# PyXB bindings for NM:a7c0866985dba806fe3112e9fbc4707c9f978443
-# Generated 2019-11-05 15:31:34.025710 by PyXB version 1.2.6 using Python 3.7.3.final.0
+# Generated 2020-02-06 10:10:19.700747 by PyXB version 1.2.6 using Python 3.7.3.final.0
# Namespace http://pacificbiosciences.com/PacBioSampleInfo.xsd [xmlns:pbsample]
from __future__ import unicode_literals
-import _pbbase as _ImportedBinding__pbbase
-import pyxb.binding.datatypes
import pyxb
import pyxb.binding
import pyxb.binding.saxer
@@ -16,8 +14,7 @@ import pyxb.utils.domutils
import sys
import pyxb.utils.six as _six
# Unique identifier for bindings created at the same time
-_GenerationUID = pyxb.utils.utility.UniqueIdentifier(
- 'urn:uuid:670030a8-0024-11ea-b259-0026b9fe0aec')
+_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:ef0acb54-490b-11ea-a47b-005056875d19')
# Version of PyXB used to generate the bindings
_PyXBVersion = '1.2.6'
@@ -30,16 +27,16 @@ if pyxb.__version__ != _PyXBVersion:
_module_typeBindings = pyxb.utils.utility.Object()
# Import bindings for namespaces imported into schema
+import pyxb.binding.datatypes
+import _pbbase as _ImportedBinding__pbbase
# NOTE: All namespace declarations are reserved within the binding
-Namespace = pyxb.namespace.NamespaceForURI(
- 'http://pacificbiosciences.com/PacBioSampleInfo.xsd', create_if_missing=True)
+Namespace = pyxb.namespace.NamespaceForURI('http://pacificbiosciences.com/PacBioSampleInfo.xsd', create_if_missing=True)
Namespace.configureCategories(['typeBinding', 'elementBinding'])
_Namespace_pbbase = _ImportedBinding__pbbase.Namespace
_Namespace_pbbase.configureCategories(['typeBinding', 'elementBinding'])
-
-def CreateFromDocument(xml_text, default_namespace=None, location_base=None):
+def CreateFromDocument (xml_text, default_namespace=None, location_base=None):
"""Parse the given XML and use the document element to create a
Python instance.
@@ -63,8 +60,7 @@ def CreateFromDocument(xml_text, default_namespace=None, location_base=None):
return CreateFromDOM(dom.documentElement, default_namespace=default_namespace)
if default_namespace is None:
default_namespace = Namespace.fallbackNamespace()
- saxer = pyxb.binding.saxer.make_parser(
- fallback_namespace=default_namespace, location_base=location_base)
+ saxer = pyxb.binding.saxer.make_parser(fallback_namespace=default_namespace, location_base=location_base)
handler = saxer.getContentHandler()
xmld = xml_text
if isinstance(xmld, _six.text_type):
@@ -73,8 +69,7 @@ def CreateFromDocument(xml_text, default_namespace=None, location_base=None):
instance = handler.rootObject()
return instance
-
-def CreateFromDOM(node, default_namespace=None):
+def CreateFromDOM (node, default_namespace=None):
"""Create a Python instance from the given DOM node.
The node tag must correspond to an element declaration in this module.
@@ -91,35 +86,31 @@ class CTD_ANON (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 96, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 96, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
-
+
# Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BioSamplePointer uses Python identifier BioSamplePointer
- __BioSamplePointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(
- Namespace, 'BioSamplePointer'), 'BioSamplePointer', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_httppacificbiosciences_comPacBioSampleInfo_xsdBioSamplePointer', False, pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 103, 5), )
+ __BioSamplePointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer'), 'BioSamplePointer', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_httppacificbiosciences_comPacBioSampleInfo_xsdBioSamplePointer', False, pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 103, 5), )
- BioSamplePointer = property(
- __BioSamplePointer.value, __BioSamplePointer.set, None, 'Pointer to a single biological sample')
+
+ BioSamplePointer = property(__BioSamplePointer.value, __BioSamplePointer.set, None, 'Pointer to a single biological sample')
+
# Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BarcodedSamplePointers uses Python identifier BarcodedSamplePointers
- __BarcodedSamplePointers = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), 'BarcodedSamplePointers',
- '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_httppacificbiosciences_comPacBioSampleInfo_xsdBarcodedSamplePointers', False, pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 112, 1), )
+ __BarcodedSamplePointers = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), 'BarcodedSamplePointers', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_httppacificbiosciences_comPacBioSampleInfo_xsdBarcodedSamplePointers', False, pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 112, 1), )
- BarcodedSamplePointers = property(__BarcodedSamplePointers.value, __BarcodedSamplePointers.set,
- None, 'Back references to other BarcodedSampleType object UniqueIds which utilize this sample')
+
+ BarcodedSamplePointers = property(__BarcodedSamplePointers.value, __BarcodedSamplePointers.set, None, 'Back references to other BarcodedSampleType object UniqueIds which utilize this sample')
_ElementMap.update({
- __BioSamplePointer.name(): __BioSamplePointer,
- __BarcodedSamplePointers.name(): __BarcodedSamplePointers
+ __BioSamplePointer.name() : __BioSamplePointer,
+ __BarcodedSamplePointers.name() : __BarcodedSamplePointers
})
_AttributeMap.update({
-
+
})
-
-
_module_typeBindings.CTD_ANON = CTD_ANON
@@ -130,27 +121,23 @@ class CTD_ANON_ (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 116, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 116, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
-
+
# Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BarcodedSamplePointer uses Python identifier BarcodedSamplePointer
- __BarcodedSamplePointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer'), 'BarcodedSamplePointer',
- '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON__httppacificbiosciences_comPacBioSampleInfo_xsdBarcodedSamplePointer', True, pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 118, 4), )
+ __BarcodedSamplePointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer'), 'BarcodedSamplePointer', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON__httppacificbiosciences_comPacBioSampleInfo_xsdBarcodedSamplePointer', True, pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 118, 4), )
- BarcodedSamplePointer = property(
- __BarcodedSamplePointer.value, __BarcodedSamplePointer.set, None, 'Pointer to a group of barcoded samples')
+
+ BarcodedSamplePointer = property(__BarcodedSamplePointer.value, __BarcodedSamplePointer.set, None, 'Pointer to a group of barcoded samples')
_ElementMap.update({
- __BarcodedSamplePointer.name(): __BarcodedSamplePointer
+ __BarcodedSamplePointer.name() : __BarcodedSamplePointer
})
_AttributeMap.update({
-
+
})
-
-
_module_typeBindings.CTD_ANON_ = CTD_ANON_
@@ -161,27 +148,23 @@ class CTD_ANON_2 (pyxb.binding.basis.complexTypeDefinition):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 130, 2)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 130, 2)
_ElementMap = {}
_AttributeMap = {}
# Base type is pyxb.binding.datatypes.anyType
-
+
# Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BioSample uses Python identifier BioSample
- __BioSample = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(
- Namespace, 'BioSample'), 'BioSample', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioSampleInfo_xsdBioSample', True, pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 136, 1), )
+ __BioSample = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), 'BioSample', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioSampleInfo_xsdBioSample', True, pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 136, 1), )
- BioSample = property(__BioSample.value, __BioSample.set,
- None, 'An individual biological sample.')
+
+ BioSample = property(__BioSample.value, __BioSample.set, None, 'An individual biological sample.')
_ElementMap.update({
- __BioSample.name(): __BioSample
+ __BioSample.name() : __BioSample
})
_AttributeMap.update({
-
+
})
-
-
_module_typeBindings.CTD_ANON_2 = CTD_ANON_2
@@ -192,176 +175,139 @@ class BioSampleType (_ImportedBinding__pbbase.BaseEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'BioSampleType')
- _XSDLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 8, 1)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 8, 1)
_ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy()
_AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy()
# Base type is _ImportedBinding__pbbase.BaseEntityType
-
+
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}DNABarcodes uses Python identifier DNABarcodes
- __DNABarcodes = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(
- Namespace, 'DNABarcodes'), 'DNABarcodes', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_httppacificbiosciences_comPacBioSampleInfo_xsdDNABarcodes', False, pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 15, 5), )
+ __DNABarcodes = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DNABarcodes'), 'DNABarcodes', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_httppacificbiosciences_comPacBioSampleInfo_xsdDNABarcodes', False, pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 15, 5), )
- DNABarcodes = property(__DNABarcodes.value, __DNABarcodes.set,
- None, 'A list of barcodes associated with the biological sample')
+
+ DNABarcodes = property(__DNABarcodes.value, __DNABarcodes.set, None, 'A list of barcodes associated with the biological sample')
+
# Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Attribute DateReceived uses Python identifier DateReceived
- __DateReceived = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
- None, 'DateReceived'), 'DateReceived', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_DateReceived', pyxb.binding.datatypes.dateTime)
- __DateReceived._DeclarationLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 34, 4)
- __DateReceived._UseLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 34, 4)
-
- DateReceived = property(__DateReceived.value, __DateReceived.set,
- None, 'Date the sample was received by the lab')
+ __DateReceived = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'DateReceived'), 'DateReceived', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_DateReceived', pyxb.binding.datatypes.dateTime)
+ __DateReceived._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 34, 4)
+ __DateReceived._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 34, 4)
+
+ DateReceived = property(__DateReceived.value, __DateReceived.set, None, 'Date the sample was received by the lab')
+
# Attribute Organism uses Python identifier Organism
- __Organism = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
- None, 'Organism'), 'Organism', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Organism', pyxb.binding.datatypes.string)
- __Organism._DeclarationLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 39, 4)
- __Organism._UseLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 39, 4)
-
- Organism = property(__Organism.value, __Organism.set,
- None, 'e.g. HIV, E.coli')
+ __Organism = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Organism'), 'Organism', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Organism', pyxb.binding.datatypes.string)
+ __Organism._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 39, 4)
+ __Organism._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 39, 4)
+
+ Organism = property(__Organism.value, __Organism.set, None, 'e.g. HIV, E.coli')
+
# Attribute Reference uses Python identifier Reference
- __Reference = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
- None, 'Reference'), 'Reference', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Reference', pyxb.binding.datatypes.string)
- __Reference._DeclarationLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 44, 4)
- __Reference._UseLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 44, 4)
-
- Reference = property(__Reference.value, __Reference.set, None,
- 'Name of reference, or pointer to one at e.g. NCBI RefSeq')
+ __Reference = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Reference'), 'Reference', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Reference', pyxb.binding.datatypes.string)
+ __Reference._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 44, 4)
+ __Reference._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 44, 4)
+
+ Reference = property(__Reference.value, __Reference.set, None, 'Name of reference, or pointer to one at e.g. NCBI RefSeq')
+
# Attribute DNAType uses Python identifier DNAType
- __DNAType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
- None, 'DNAType'), 'DNAType', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_DNAType', pyxb.binding.datatypes.string)
- __DNAType._DeclarationLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 49, 4)
- __DNAType._UseLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 49, 4)
-
- DNAType = property(__DNAType.value, __DNAType.set, None,
- 'shotgun library, amplicon, etc.')
+ __DNAType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'DNAType'), 'DNAType', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_DNAType', pyxb.binding.datatypes.string)
+ __DNAType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 49, 4)
+ __DNAType._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 49, 4)
+
+ DNAType = property(__DNAType.value, __DNAType.set, None, 'shotgun library, amplicon, etc.')
+
# Attribute Concentration uses Python identifier Concentration
- __Concentration = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
- None, 'Concentration'), 'Concentration', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Concentration', pyxb.binding.datatypes.float)
- __Concentration._DeclarationLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 54, 4)
- __Concentration._UseLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 54, 4)
-
- Concentration = property(__Concentration.value,
- __Concentration.set, None, 'in ng/uL, e.g. 250')
+ __Concentration = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Concentration'), 'Concentration', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Concentration', pyxb.binding.datatypes.float)
+ __Concentration._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 54, 4)
+ __Concentration._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 54, 4)
+
+ Concentration = property(__Concentration.value, __Concentration.set, None, 'in ng/uL, e.g. 250')
+
# Attribute QuantificationMethod uses Python identifier QuantificationMethod
- __QuantificationMethod = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
- None, 'QuantificationMethod'), 'QuantificationMethod', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_QuantificationMethod', pyxb.binding.datatypes.string)
- __QuantificationMethod._DeclarationLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 59, 4)
- __QuantificationMethod._UseLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 59, 4)
-
- QuantificationMethod = property(
- __QuantificationMethod.value, __QuantificationMethod.set, None, 'e.g. Qubit')
+ __QuantificationMethod = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'QuantificationMethod'), 'QuantificationMethod', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_QuantificationMethod', pyxb.binding.datatypes.string)
+ __QuantificationMethod._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 59, 4)
+ __QuantificationMethod._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 59, 4)
+
+ QuantificationMethod = property(__QuantificationMethod.value, __QuantificationMethod.set, None, 'e.g. Qubit')
+
# Attribute SMRTBellConcentration uses Python identifier SMRTBellConcentration
- __SMRTBellConcentration = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
- None, 'SMRTBellConcentration'), 'SMRTBellConcentration', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SMRTBellConcentration', pyxb.binding.datatypes.float)
- __SMRTBellConcentration._DeclarationLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 64, 4)
- __SMRTBellConcentration._UseLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 64, 4)
-
- SMRTBellConcentration = property(
- __SMRTBellConcentration.value, __SMRTBellConcentration.set, None, 'in ng/uL, e.g. 4.5')
+ __SMRTBellConcentration = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SMRTBellConcentration'), 'SMRTBellConcentration', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SMRTBellConcentration', pyxb.binding.datatypes.float)
+ __SMRTBellConcentration._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 64, 4)
+ __SMRTBellConcentration._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 64, 4)
+
+ SMRTBellConcentration = property(__SMRTBellConcentration.value, __SMRTBellConcentration.set, None, 'in ng/uL, e.g. 4.5')
+
# Attribute SMRTBellQuantificationMethod uses Python identifier SMRTBellQuantificationMethod
- __SMRTBellQuantificationMethod = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
- None, 'SMRTBellQuantificationMethod'), 'SMRTBellQuantificationMethod', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SMRTBellQuantificationMethod', pyxb.binding.datatypes.string)
- __SMRTBellQuantificationMethod._DeclarationLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 69, 4)
- __SMRTBellQuantificationMethod._UseLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 69, 4)
-
- SMRTBellQuantificationMethod = property(
- __SMRTBellQuantificationMethod.value, __SMRTBellQuantificationMethod.set, None, 'e.g. Qubit')
+ __SMRTBellQuantificationMethod = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SMRTBellQuantificationMethod'), 'SMRTBellQuantificationMethod', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SMRTBellQuantificationMethod', pyxb.binding.datatypes.string)
+ __SMRTBellQuantificationMethod._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 69, 4)
+ __SMRTBellQuantificationMethod._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 69, 4)
+
+ SMRTBellQuantificationMethod = property(__SMRTBellQuantificationMethod.value, __SMRTBellQuantificationMethod.set, None, 'e.g. Qubit')
+
# Attribute BufferName uses Python identifier BufferName
- __BufferName = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
- None, 'BufferName'), 'BufferName', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_BufferName', pyxb.binding.datatypes.string)
- __BufferName._DeclarationLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 74, 4)
- __BufferName._UseLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 74, 4)
-
- BufferName = property(__BufferName.value,
- __BufferName.set, None, 'e.g. Tris HCl')
+ __BufferName = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'BufferName'), 'BufferName', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_BufferName', pyxb.binding.datatypes.string)
+ __BufferName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 74, 4)
+ __BufferName._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 74, 4)
+
+ BufferName = property(__BufferName.value, __BufferName.set, None, 'e.g. Tris HCl')
+
# Attribute SamplePrepKit uses Python identifier SamplePrepKit
- __SamplePrepKit = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
- None, 'SamplePrepKit'), 'SamplePrepKit', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SamplePrepKit', pyxb.binding.datatypes.string)
- __SamplePrepKit._DeclarationLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 79, 4)
- __SamplePrepKit._UseLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 79, 4)
-
- SamplePrepKit = property(
- __SamplePrepKit.value, __SamplePrepKit.set, None, 'e.g. SMRTbell Template Prep Kit')
+ __SamplePrepKit = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SamplePrepKit'), 'SamplePrepKit', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SamplePrepKit', pyxb.binding.datatypes.string)
+ __SamplePrepKit._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 79, 4)
+ __SamplePrepKit._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 79, 4)
+
+ SamplePrepKit = property(__SamplePrepKit.value, __SamplePrepKit.set, None, 'e.g. SMRTbell Template Prep Kit')
+
# Attribute TargetLibrarySize uses Python identifier TargetLibrarySize
- __TargetLibrarySize = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(
- None, 'TargetLibrarySize'), 'TargetLibrarySize', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_TargetLibrarySize', pyxb.binding.datatypes.string)
- __TargetLibrarySize._DeclarationLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 84, 4)
- __TargetLibrarySize._UseLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 84, 4)
-
- TargetLibrarySize = property(
- __TargetLibrarySize.value, __TargetLibrarySize.set, None, '2000, 10000, 20000')
+ __TargetLibrarySize = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'TargetLibrarySize'), 'TargetLibrarySize', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_TargetLibrarySize', pyxb.binding.datatypes.string)
+ __TargetLibrarySize._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 84, 4)
+ __TargetLibrarySize._UseLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 84, 4)
+
+ TargetLibrarySize = property(__TargetLibrarySize.value, __TargetLibrarySize.set, None, '2000, 10000, 20000')
_ElementMap.update({
- __DNABarcodes.name(): __DNABarcodes
+ __DNABarcodes.name() : __DNABarcodes
})
_AttributeMap.update({
- __DateReceived.name(): __DateReceived,
- __Organism.name(): __Organism,
- __Reference.name(): __Reference,
- __DNAType.name(): __DNAType,
- __Concentration.name(): __Concentration,
- __QuantificationMethod.name(): __QuantificationMethod,
- __SMRTBellConcentration.name(): __SMRTBellConcentration,
- __SMRTBellQuantificationMethod.name(): __SMRTBellQuantificationMethod,
- __BufferName.name(): __BufferName,
- __SamplePrepKit.name(): __SamplePrepKit,
- __TargetLibrarySize.name(): __TargetLibrarySize
+ __DateReceived.name() : __DateReceived,
+ __Organism.name() : __Organism,
+ __Reference.name() : __Reference,
+ __DNAType.name() : __DNAType,
+ __Concentration.name() : __Concentration,
+ __QuantificationMethod.name() : __QuantificationMethod,
+ __SMRTBellConcentration.name() : __SMRTBellConcentration,
+ __SMRTBellQuantificationMethod.name() : __SMRTBellQuantificationMethod,
+ __BufferName.name() : __BufferName,
+ __SamplePrepKit.name() : __SamplePrepKit,
+ __TargetLibrarySize.name() : __TargetLibrarySize
})
-
-
_module_typeBindings.BioSampleType = BioSampleType
Namespace.addCategoryObject('typeBinding', 'BioSampleType', BioSampleType)
@@ -373,76 +319,63 @@ class CTD_ANON_3 (_ImportedBinding__pbbase.BaseEntityType):
_ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY
_Abstract = False
_ExpandedName = None
- _XSDLocation = pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 19, 6)
+ _XSDLocation = pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 19, 6)
_ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy()
_AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy()
# Base type is _ImportedBinding__pbbase.BaseEntityType
-
+
# Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}DNABarcode uses Python identifier DNABarcode
- __DNABarcode = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(
- Namespace, 'DNABarcode'), 'DNABarcode', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioSampleInfo_xsdDNABarcode', True, pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 23, 10), )
+ __DNABarcode = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DNABarcode'), 'DNABarcode', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioSampleInfo_xsdDNABarcode', True, pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 23, 10), )
- DNABarcode = property(__DNABarcode.value, __DNABarcode.set, None,
- 'A sequence of barcodes associated with the biological sample')
+
+ DNABarcode = property(__DNABarcode.value, __DNABarcode.set, None, 'A sequence of barcodes associated with the biological sample')
+
# Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
-
+
# Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType
_ElementMap.update({
- __DNABarcode.name(): __DNABarcode
+ __DNABarcode.name() : __DNABarcode
})
_AttributeMap.update({
-
+
})
-
-
_module_typeBindings.CTD_ANON_3 = CTD_ANON_3
-BioSamplePointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointers'), CTD_ANON,
- documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 92, 1))
-Namespace.addCategoryObject(
- 'elementBinding', BioSamplePointers.name().localName(), BioSamplePointers)
+BioSamplePointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointers'), CTD_ANON, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 92, 1))
+Namespace.addCategoryObject('elementBinding', BioSamplePointers.name().localName(), BioSamplePointers)
-BarcodedSamplePointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), CTD_ANON_,
- documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 112, 1))
-Namespace.addCategoryObject('elementBinding', BarcodedSamplePointers.name(
-).localName(), BarcodedSamplePointers)
+BarcodedSamplePointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), CTD_ANON_, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 112, 1))
+Namespace.addCategoryObject('elementBinding', BarcodedSamplePointers.name().localName(), BarcodedSamplePointers)
-BioSamples = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamples'), CTD_ANON_2,
- documentation='List of biological samples.', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 126, 1))
-Namespace.addCategoryObject(
- 'elementBinding', BioSamples.name().localName(), BioSamples)
+BioSamples = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamples'), CTD_ANON_2, documentation='List of biological samples.', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 126, 1))
+Namespace.addCategoryObject('elementBinding', BioSamples.name().localName(), BioSamples)
-BioSample = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), BioSampleType,
- documentation='An individual biological sample.', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 136, 1))
-Namespace.addCategoryObject(
- 'elementBinding', BioSample.name().localName(), BioSample)
+BioSample = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), BioSampleType, documentation='An individual biological sample.', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 136, 1))
+Namespace.addCategoryObject('elementBinding', BioSample.name().localName(), BioSample)
-CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON,
- documentation='Pointer to a single biological sample', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 103, 5)))
-CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), CTD_ANON_, scope=CTD_ANON,
- documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 112, 1)))
+CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON, documentation='Pointer to a single biological sample', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 103, 5)))
+CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), CTD_ANON_, scope=CTD_ANON, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 112, 1)))
-def _BuildAutomaton():
+def _BuildAutomaton ():
# Remove this helper function from the namespace after it is invoked
global _BuildAutomaton
del _BuildAutomaton
@@ -451,32 +384,26 @@ def _BuildAutomaton():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(
- Namespace, 'BarcodedSamplePointers')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 102, 5))
- st_0 = fac.State(symbol, is_initial=True,
- final_update=final_update, is_unordered_catenation=False)
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 102, 5))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(
- Namespace, 'BioSamplePointer')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 103, 5))
- st_1 = fac.State(symbol, is_initial=True,
- final_update=final_update, is_unordered_catenation=False)
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 103, 5))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
transitions = []
st_0._set_transitionSet(transitions)
transitions = []
st_1._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-
-
CTD_ANON._Automaton = _BuildAutomaton()
-CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_,
- documentation='Pointer to a group of barcoded samples', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 118, 4)))
-def _BuildAutomaton_():
+CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_, documentation='Pointer to a group of barcoded samples', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 118, 4)))
+
+def _BuildAutomaton_ ():
# Remove this helper function from the namespace after it is invoked
global _BuildAutomaton_
del _BuildAutomaton_
@@ -485,26 +412,22 @@ def _BuildAutomaton_():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(
- Namespace, 'BarcodedSamplePointer')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 118, 4))
- st_0 = fac.State(symbol, is_initial=True,
- final_update=final_update, is_unordered_catenation=False)
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 118, 4))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
transitions.append(fac.Transition(st_0, [
- ]))
+ ]))
st_0._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-
-
CTD_ANON_._Automaton = _BuildAutomaton_()
-CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), BioSampleType, scope=CTD_ANON_2,
- documentation='An individual biological sample.', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 136, 1)))
-def _BuildAutomaton_2():
+CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), BioSampleType, scope=CTD_ANON_2, documentation='An individual biological sample.', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 136, 1)))
+
+def _BuildAutomaton_2 ():
# Remove this helper function from the namespace after it is invoked
global _BuildAutomaton_2
del _BuildAutomaton_2
@@ -513,129 +436,109 @@ def _BuildAutomaton_2():
counters = set()
states = []
final_update = set()
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(
- Namespace, 'BioSample')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 132, 4))
- st_0 = fac.State(symbol, is_initial=True,
- final_update=final_update, is_unordered_catenation=False)
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSample')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 132, 4))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
transitions = []
transitions.append(fac.Transition(st_0, [
- ]))
+ ]))
st_0._set_transitionSet(transitions)
return fac.Automaton(states, counters, False, containing_state=None)
-
-
CTD_ANON_2._Automaton = _BuildAutomaton_2()
-BioSampleType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DNABarcodes'), CTD_ANON_3, scope=BioSampleType,
- documentation='A list of barcodes associated with the biological sample', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 15, 5)))
-def _BuildAutomaton_3():
+BioSampleType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DNABarcodes'), CTD_ANON_3, scope=BioSampleType, documentation='A list of barcodes associated with the biological sample', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 15, 5)))
+
+def _BuildAutomaton_3 ():
# Remove this helper function from the namespace after it is invoked
global _BuildAutomaton_3
del _BuildAutomaton_3
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioBaseDataModel.xsd', 98, 3))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioBaseDataModel.xsd', 98, 3))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 15, 5))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 15, 5))
counters.add(cc_1)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
- symbol = pyxb.binding.content.ElementUse(BioSampleType._UseForTag(pyxb.namespace.ExpandedName(
- _Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioBaseDataModel.xsd', 98, 3))
- st_0 = fac.State(symbol, is_initial=True,
- final_update=final_update, is_unordered_catenation=False)
+ symbol = pyxb.binding.content.ElementUse(BioSampleType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioBaseDataModel.xsd', 98, 3))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(BioSampleType._UseForTag(pyxb.namespace.ExpandedName(
- Namespace, 'DNABarcodes')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 15, 5))
- st_1 = fac.State(symbol, is_initial=True,
- final_update=final_update, is_unordered_catenation=False)
+ symbol = pyxb.binding.content.ElementUse(BioSampleType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DNABarcodes')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 15, 5))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
transitions = []
transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_0, True)]))
+ fac.UpdateInstruction(cc_0, True) ]))
transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_0, False)]))
+ fac.UpdateInstruction(cc_0, False) ]))
st_0._set_transitionSet(transitions)
transitions = []
transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_1, True)]))
+ fac.UpdateInstruction(cc_1, True) ]))
st_1._set_transitionSet(transitions)
return fac.Automaton(states, counters, True, containing_state=None)
-
-
BioSampleType._Automaton = _BuildAutomaton_3()
-CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DNABarcode'), _ImportedBinding__pbbase.DNABarcode, scope=CTD_ANON_3,
- documentation='A sequence of barcodes associated with the biological sample', location=pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 23, 10)))
-def _BuildAutomaton_4():
+CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DNABarcode'), _ImportedBinding__pbbase.DNABarcode, scope=CTD_ANON_3, documentation='A sequence of barcodes associated with the biological sample', location=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 23, 10)))
+
+def _BuildAutomaton_4 ():
# Remove this helper function from the namespace after it is invoked
global _BuildAutomaton_4
del _BuildAutomaton_4
import pyxb.utils.fac as fac
counters = set()
- cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 19, 6))
+ cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 19, 6))
counters.add(cc_0)
- cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioBaseDataModel.xsd', 98, 3))
+ cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioBaseDataModel.xsd', 98, 3))
counters.add(cc_1)
- cc_2 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location(
- '/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 23, 10))
+ cc_2 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 23, 10))
counters.add(cc_2)
states = []
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
final_update.add(fac.UpdateInstruction(cc_1, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(
- _Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioBaseDataModel.xsd', 98, 3))
- st_0 = fac.State(symbol, is_initial=True,
- final_update=final_update, is_unordered_catenation=False)
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioBaseDataModel.xsd', 98, 3))
+ st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_0)
final_update = set()
final_update.add(fac.UpdateInstruction(cc_0, False))
final_update.add(fac.UpdateInstruction(cc_2, False))
- symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(
- Namespace, 'DNABarcode')), pyxb.utils.utility.Location('/tmp/tmpxnspo6c2xsds/PacBioSampleInfo.xsd', 23, 10))
- st_1 = fac.State(symbol, is_initial=True,
- final_update=final_update, is_unordered_catenation=False)
+ symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DNABarcode')), pyxb.utils.utility.Location('/tmp/tmptd_ghkedxsds/PacBioSampleInfo.xsd', 23, 10))
+ st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False)
states.append(st_1)
transitions = []
transitions.append(fac.Transition(st_0, [
fac.UpdateInstruction(cc_0, True),
- fac.UpdateInstruction(cc_1, False)]))
+ fac.UpdateInstruction(cc_1, False) ]))
transitions.append(fac.Transition(st_0, [
- fac.UpdateInstruction(cc_1, True)]))
+ fac.UpdateInstruction(cc_1, True) ]))
transitions.append(fac.Transition(st_1, [
fac.UpdateInstruction(cc_0, True),
- fac.UpdateInstruction(cc_1, False)]))
+ fac.UpdateInstruction(cc_1, False) ]))
transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_1, False)]))
+ fac.UpdateInstruction(cc_1, False) ]))
st_0._set_transitionSet(transitions)
transitions = []
transitions.append(fac.Transition(st_0, [
fac.UpdateInstruction(cc_0, True),
- fac.UpdateInstruction(cc_2, False)]))
+ fac.UpdateInstruction(cc_2, False) ]))
transitions.append(fac.Transition(st_1, [
fac.UpdateInstruction(cc_0, True),
- fac.UpdateInstruction(cc_2, False)]))
+ fac.UpdateInstruction(cc_2, False) ]))
transitions.append(fac.Transition(st_1, [
- fac.UpdateInstruction(cc_2, True)]))
+ fac.UpdateInstruction(cc_2, True) ]))
st_1._set_transitionSet(transitions)
return fac.Automaton(states, counters, True, containing_state=None)
-
-
CTD_ANON_3._Automaton = _BuildAutomaton_4()
+
View it on GitLab: https://salsa.debian.org/med-team/python-pbcore/-/commit/70a1e3ee0ab7b8db922f135450d5e56072673d3d
--
View it on GitLab: https://salsa.debian.org/med-team/python-pbcore/-/commit/70a1e3ee0ab7b8db922f135450d5e56072673d3d
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