[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Tue Feb 25 10:47:47 GMT 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
7a262c4e by Andreas Tille at 2020-02-25T10:47:43+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Tue, 25 Feb 2020 08:56:56 +0000
+Last-Update: Tue, 25 Feb 2020 10:43:59 +0000
 
  Source                        | Vote   | Tasks                                      |                                 Tags                                 
 -------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------


=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Mon, 24 Feb 2020 15:45:23 +0100
+Last-Update: Tue, 25 Feb 2020 10:43:59 +0000
 
  source                        |             version             |        upstream_version         |                       uploaders                                             | Last uploader        |     Last uploaded      
 -------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -9,7 +9,7 @@ Last-Update: Mon, 24 Feb 2020 15:45:23 +0100
  bbmap                         | 38.73                           | 38.79                           | Andreas Tille                                                               | Andreas Tille        | 2019-11-22 21:04:16+00
  bcbio                         | 1.1.9                           | 1.2.0                           | Steffen Moeller                                                             | Michael R. Crusoe    | 2020-02-14 17:19:16+00
  beast2-mcmc                   | 2.6.0                           | 2.6.1                           | Andreas Tille,Olivier Sallou                                                | Andreas Tille        | 2019-07-31 13:08:02+00
- biobambam2                    | 2.0.153                         | 2.0.154+ds                      | Andreas Tille                                                               | Andreas Tille        | 2020-02-05 13:20:41+00
+ biobambam2                    | 2.0.153                         | 2.0.156+ds                      | Andreas Tille                                                               | Andreas Tille        | 2020-02-05 13:20:41+00
  biojava-live                  | 1.7.1                           | 1.9.3                           | Andreas Tille,Olivier Sallou,Steffen Moeller                                | Andreas Tille        | 2018-11-12 15:49:23+00
  biomaj3                       | 3.1.14                          | 3.1.16                          | Olivier Sallou                                                              | Olivier Sallou       | 2020-02-08 18:22:42+00
  biomaj3-core                  | 3.0.19                          | 3.0.22                          | Olivier Sallou                                                              | Olivier Sallou       | 2019-11-12 11:20:23+00
@@ -44,15 +44,14 @@ Last-Update: Mon, 24 Feb 2020 15:45:23 +0100
  libgclib                      | 0.11.4                          | 0.11.7                          | Andreas Tille,Michael R. Crusoe,Steffen Moeller                             | Michael R. Crusoe    | 2020-02-14 13:04:26+00
  libics                        | 1.6.3                           | 1.6.4                           | Andreas Tille                                                               | Andreas Tille        | 2019-08-01 12:39:13+00
  libjloda-java                 | 0.0+git20180523.cbaf6d1         | 0.0+git20200221.17916cc         | Andreas Tille                                                               | Andreas Tille        | 2018-05-25 21:49:43+00
- libmaus2                      | 2.0.698                         | 2.0.700                         | Andreas Tille,Steffen Moeller                                               | Andreas Tille        | 2020-02-05 10:04:12+00
+ libmaus2                      | 2.0.698                         | 2.0.703                         | Andreas Tille,Steffen Moeller                                               | Andreas Tille        | 2020-02-05 10:04:12+00
  libsis-base-java              | 18.09~pre1+git20180827.fe4953e  | 18.09~pre1+git20180928.45fbd31  | Andreas Tille,Olivier Sallou,Tim Booth                                      | Andreas Tille        | 2018-09-26 08:35:30+00
- libundead                     | 1.0.10                          | 1.1.0                           | Andreas Tille                                                               | Andreas Tille        | 2019-09-13 21:06:10+00
+ libundead                     | 1.0.10                          | 1.1.1                           | Andreas Tille                                                               | Andreas Tille        | 2019-09-13 21:06:10+00
  metaphlan2                    | 2.9.22                          | 2.96.1                          | Andreas Tille                                                               | Andreas Tille        | 2019-11-08 07:19:11+00
  mmseqs2                       | 10-6d92c                        | 11-e1a1c                        | Shayan Doust                                                                | Andreas Tille        | 2020-02-11 22:38:56+00
  mothur                        | 1.42.1                          | 1.43.0                          | Andreas Tille,Steffen Moeller,Tomasz Buchert                                | Andreas Tille        | 2019-08-01 19:09:05+00
  mummer                        | 3.23                            | 4.0.0~beta2                     | Andreas Tille,Charles Plessy,Steffen Moeller                                | Andreas Tille        | 2018-06-11 07:19:31+00
  ncbi-blast+                   | 2.9.0                           | 2.10.0                          | Aaron M. Ucko,Andreas Tille,Olivier Sallou                                  | Aaron M. Ucko        | 2020-02-17 01:50:53+00
- ncbi-vdb                      | 2.9.3                           | 2.10.3                          | Andreas Tille                                                               | Andreas Tille        | 2019-01-14 21:36:23+00
  nibabel                       | 2.5.1                           | 3.0.1                           | Michael Hanke,Yaroslav Halchenko                                            | Andreas Tille        | 2020-01-20 10:35:09+00
  pbcopper                      | 1.3.0                           | 1.4.0                           | Andreas Tille                                                               | Andreas Tille        | 2020-01-29 08:51:15+00
  pbgenomicconsensus            | 2.3.2                           | 2.3.3                           | Andreas Tille                                                               | Liubov Chuprikova    | 2019-04-07 15:33:36+00
@@ -84,6 +83,206 @@ Last-Update: Mon, 24 Feb 2020 15:45:23 +0100
  unanimity                     | 3.3.0                           | 4.2.0                           | Afif Elghraoui,Andreas Tille                                                | Adrian Bunk          | 2019-02-06 07:34:42+00
  vsearch                       | 2.14.1                          | 2.14.2                          | Andreas Tille,Tim Booth                                                     | Andreas Tille        | 2019-12-17 10:07:09+00
  xmedcon                       | 0.16.1                          | 0.16.2                          | Andreas Tille,Roland Marcus Rutschmann                                      | Andreas Tille        | 2019-01-25 18:23:59+00
-(82 rows)
+(81 rows)
 
 
+ source                        |   id   | severity  |                                                                                                                                                                                                                           title                                                                                                                                                                                                                           
+-------------------------------+--------+-----------+-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
+ abyss                         | 920282 | important | abyss fails to build on hurd - googletest EXPECT_DEATH
+ amide                         | 901677 | normal    | amide: Window is too wide and not resizable
+ arb                           | 916406 | important | libarb-dev: Missing symbols in static libraries
+ arb                           | 918015 | wishlist  | [INTL:sv] Swedish strings for arb debconf
+ arb                           | 926017 | minor     | arb: Typo in package description: "website links unreachable, description outdated"
+ ariba                         | 951944 | serious   | ariba: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.7 returned exit code 13
+ bali-phy                      | 951991 | serious   | bali-phy: FTBFS: detected.hpp:52:7: error: invalid use of incomplete type ‘struct nlohmann::detail::detector<nlohmann::detail::nonesuch, void, nlohmann::detail::to_json_function, nlohmann::adl_serializer<ptree, void>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long int, long unsigned int, double, std::allocator, nlohmann::adl_serializer>&, ptree>’
+ ball                          | 936183 | normal    | ball: Python2 removal in sid/bullseye
+ bamtools                      | 865130 | important | reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz'
+ bcbio                         | 928076 | important | bcbio: Workflows not ready for non-developers to depend on.
+ bcftools                      | 819617 | important | FTBFS: any-i386 - floating point idiosyncracies
+ bcftools                      | 860682 | important | bcftools: FTBFS on i386: Test failures
+ bcftools                      | 860704 | important | python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1)
+ bcftools                      | 870060 | important | bcftools FTBFS on big endian: 107 tests failed
+ biococoa                      | 749736 | normal    | biococoa: GCC warnings that may lead to runtime issues with new GNUstep libraries
+ biojava4-live                 | 843712 | normal    | biojava4-live: FTBFS (failing tests)
+ biojava-live                  | 659824 | minor     | biojava-live: New version available
+ biomaj3                       | 950914 | minor     | python3-biomaj3: Depends on python-influxdb wich ftbs, patch to remove dependency
+ bwa                           | 942447 | normal    | Build bwa on ppc64el
+ camp                          | 900181 | normal    | camp: FTBFS on 32bit big endian: check metaclass->function("f4").call(object, camp::Args(1, 4, 15)).to<unsigned long>() == 20 has failed
+ cfflib                        | 936285 | serious   | cfflib: Python2 removal in sid/bullseye
+ clonalorigin                  | 884475 | wishlist  | clonalorigin: FTBFS on alpha: tests time out
+ dawg                          | 903886 | important | dawg: Test suite fails
+ dcmtk                         | 637687 | wishlist  | libdcmtk2-dev: Dcmtk headers cause compile failure
+ dcmtk                         | 675448 | important | dcmtk: dcmdjpeg does not set (0028, 2114) LossyImageCompressionMethod when decompressing lossy compressed DICOM file
+ dcmtk                         | 697073 | important | dcmtk: dcmdjpeg fails to decode a lossless JPEG
+ dcmtk                         | 714943 | wishlist  | Fwd: getscu stops working with dcmtk 3.6.0
+ dcmtk                         | 715029 | wishlist  | Fwd: dcmnet/libsrc/dulfsm.cc
+ dcmtk                         | 718557 | wishlist  | dcmtk: Missing transition in dcmqrscp
+ dcmtk                         | 724886 | wishlist  | IHE Radiology Technical Framework, Volume 2 (RAD TF-2)
+ dcmtk                         | 730610 | wishlist  | C-STORE SCU not working with JPIP Transfer Syntax
+ dcmtk                         | 731433 | normal    | iteration 9396u invokes undefined behavior [-Waggressive-loop-optimizations]
+ dcmtk                         | 748403 | normal    | Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls
+ dcmtk                         | 810926 | normal    | dcmtk-www: missing file name extension of /etc/apache2/conf-available/dcmtk
+ dcmtk                         | 859202 | normal    | warning: 'int readdir_r(DIR*, dirent*, dirent**)' is deprecated
+ dcmtk                         | 900196 | minor     | dcmtk: wrongly assumes that CMAKE_SYSTEM_VERSION to be non-empty
+ dcmtk                         | 913227 | normal    | dcmqrcbm.cc:319:38: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 128
+ dcmtk                         | 913585 | normal    | warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Sint32' {aka 'int'} [-Wformat=]
+ dcmtk                         | 935879 | normal    | Update to use CharLS 2.0
+ deepnano                      | 921566 | important | deepnano: autopkgtest times out since 2019-01-11
+ dicom3tools                   | 559313 | normal    | dicom3tools: dciodvfy aborts on valid RT Dose Storage file
+ dicom3tools                   | 631101 | wishlist  | dicom3tools: dcdump stops on extra 0,0 tag
+ dicom3tools                   | 704146 | wishlist  | Error - Undefined value length of other byte/word element is illegal in non-encapsulated transfer syntax
+ dicom3tools                   | 714989 | wishlist  | Error - Can't allocate any color cells
+ dicom3tools                   | 731158 | normal    | Error - Information Object Not found (=UltrasoundMultiframeImageStorage)
+ dicom3tools                   | 815628 | normal    | dicom3tools: dcintro man page missing
+ dicomscope                    | 927089 | normal    | dicomscope-doc: error merging doc-base files: format pdf already defined
+ discosnp                      | 942404 | serious   | discosnp: flaky autopkgtest: discoRes_k_31_c_auto_D_100_P_1_b_0_coherent.fa: No such file or directory
+ ea-utils                      | 846858 | normal    | src:ea-utils: New version available
+ ea-utils                      | 862118 | wishlist  | ea-utils: New upstream version available
+ elastix                       | 909280 | wishlist  | elastix: New upstream available
+ emboss                        | 682042 | normal    | emboss-data: ships bulky taxonomy and gene ontology data
+ falcon                        | 902132 | serious   | falcon: FTBFS since python-networkx version 2.1-1; fails in test suite
+ falcon                        | 936503 | serious   | falcon: Python2 removal in sid/bullseye
+ fastlink                      | 909713 | minor     | fastlink: Please provide autopkgtest
+ fastqc                        | 950311 | normal    | fastqc: FAIL strings in output - what does this mean?
+ freemedforms-project          | 874880 | serious   | [freemedforms-project] Future Qt4 removal from Buster
+ garli                         | 907905 | normal    | garli: FTBFS randomly (failing tests)
+ gatb-core                     | 929564 | normal    | gatb-core-testdata: broken symlink: /usr/share/doc/gatb-core/test/gatb-core-cppunit -> ../../../../lib/gatb-core/gatb-core-cppunit
+ gdcm                          | 731435 | normal    | warning: iteration 55823u invokes undefined behavior [-Waggressive-loop-optimizations]
+ gdcm                          | 749783 | normal    | gdcm: Conflicting declarations of jpeg_memory_mgr may lead to invalid function calls
+ gdcm                          | 826048 | wishlist  | Faulty CMake file impairs compiling against GDCM
+ gdcm                          | 947990 | important | gdcm: Doesn't build on ports without java
+ gemma                         | 952190 | serious   | gemma: FTBFS: dh_auto_test: error: make -j1 check returned exit code 2
+ gentle                        | 732691 | normal    | Pressing "alignment or Ctrl+G"   only results in a dialog with a  cancel button
+ ghmm                          | 936609 | normal    | ghmm: Python2 removal in sid/bullseye
+ gnumed-client                 | 936630 | serious   | gnumed-client: Python2 removal in sid/bullseye
+ gnumed-server                 | 936631 | normal    | gnumed-server: Python2 removal in sid/bullseye
+ harvest-tools                 | 943055 | normal    | harvest-tools: Python2 removal in sid/bullseye
+ htsjdk                        | 877590 | normal    | FTBFS: error: package org.testng does not exist
+ htsjdk                        | 920588 | normal    | htsjdk: Autopkgtest for htsjdk
+ htslib                        | 922860 | normal    | Packages do not contain the upstream README file
+ idba                          | 909716 | minor     | idba: Please provide autopkgtest
+ igv                           | 940606 | normal    | new upstream (2.6.3)
+ insighttoolkit4               | 724711 | wishlist  | insighttoolkit4: Drops architecture support
+ insighttoolkit4               | 759794 | wishlist  | insighttoolkit4: FTBFS on amd64 with ENOSPC
+ insighttoolkit4               | 780659 | wishlist  | insighttoolkit only built on amd64 and i386
+ insighttoolkit4               | 801367 | normal    | please reduce the size of the swig generated translation units
+ insighttoolkit4               | 853752 | wishlist  | src:insighttoolkit4: Add documentation package
+ insighttoolkit4               | 943677 | normal    | please package insighttoolkit5 (5.0 and 5.1 beta 1 are out)
+ insighttoolkit4               | 944179 | important | insighttoolkit4: non-standard gcc/g++ used for build (gcc-8)
+ ismrmrd                       | 863168 | important | ismrmrd FTBFS on armhf: 1 failure is detected in the test module "ISMRMRD Unit Tests"
+ jellyfish1                    | 875328 | wishlist  | jellyfish1: FTBFS: __sync_val_compare_and_swap_8 undefined
+ khmer                         | 851830 | minor     | arm64 has flaky tests
+ kineticstools                 | 936797 | serious   | kineticstools: Python2 removal in sid/bullseye
+ kissplice                     | 936798 | normal    | kissplice: Python2 removal in sid/bullseye
+ kmer                          | 936802 | normal    | kmer: Python2 removal in sid/bullseye
+ libgtextutils                 | 925745 | serious   | libgtextutils: ftbfs with GCC-9
+ libhmsbeagle                  | 950367 | normal    | confuses DEB_HOST_MULTIARCH and DEB_HOST_GNU_TYPE
+ libjung-free-java             | 884379 | minor     | libjung-free-java: New version available
+ liblemon                      | 925749 | serious   | liblemon: ftbfs with GCC-9
+ liblemon                      | 936888 | normal    | liblemon: Python2 removal in sid/bullseye
+ libmaus2                      | 934619 | serious   | libmaus2 FTBFS (mostly 32bit): error: no matching function for call
+ librostlab-blast              | 832138 | wishlist  | librostlab-blast: The package should compile without forcing the older -std=c++03
+ librostlab-blast              | 851472 | normal    | librostlab-blast: autopkg test suite failure
+ libsis-base-java              | 929530 | important | libsis-base-java: unaligned access on armhf
+ libsis-jhdf5-java             | 842815 | serious   | libsis-jhdf5-java: FTBFS: java.lang.NoClassDefFoundError: Could not initialize class ch.systemsx.cisd.hdf5.CharacterEncoding
+ libsis-jhdf5-java             | 846735 | serious   | libsis-jhdf5-java: FTBFS: java.lang.NoClassDefFoundError: Could not initialize class ch.systemsx.cisd.hdf5.CharacterEncoding
+ libundead                     | 859667 | important | "Will be removed once new version of libbiod is available"
+ macs                          | 949204 | serious   | macs FTBFS on most architectures. test failures
+ macsyfinder                   | 933928 | normal    | macsyfinder: Port to Python3 needed
+ macsyfinder                   | 936977 | normal    | macsyfinder: Python2 removal in sid/bullseye
+ medicalterms                  | 602423 | important | hunspell-de-med: german dictionary unusable
+ mencal                        | 607008 | normal    | mencal: with l10n, calendar header formatting not aligned with column content
+ metaphlan2-data               | 839925 | important | metaphlan2-data: postinst deletes shipped file: /var/lib/metaphlan2-data/markers.fasta
+ mipe                          | 890788 | minor     | mipe: Please provide autopkgtest
+ mriconvert                    | 617342 | normal    | 32-bit multiframe image conversion ignores frames
+ ncbi-blast+                   | 891197 | normal    | Please switch to pcre2
+ ncbi-tools6                   | 225651 | wishlist  | ncbi-tools-x11: want Cn3D++
+ nibabel                       | 868229 | normal    | NotImplementedError: Pixel Data is compressed in a format pydicom does not yet handle. Cannot return array
+ nut-nutrition                 | 339838 | wishlist  | nut-nutrition: Would like to record 'snacks' and change the number of meals
+ obitools                      | 935340 | normal    | obitools: Port to Python3 needed
+ obitools                      | 937177 | normal    | obitools: Python2 removal in sid/bullseye
+ opencfu                       | 922589 | serious   | FTBFS against opencv 4.0.1 (exp)
+ openslide-python              | 842150 | wishlist  | RunningDeepZoomServerOnApache
+ opensurgsim                   | 912110 | important | opensurgsim FTBFS: test failures
+ opensurgsim                   | 914338 | normal    | opensurgsim ftbfs with ld --as-needed
+ orthanc                       | 829380 | wishlist  | orthanc: please provide orthanc_upgrade script
+ orthanc-postgresql            | 829383 | wishlist  | orthanc-postgresql: please provide backup script
+ orthanc-webviewer             | 828949 | minor     | orthanc-webviewer: "better" suggestion for cache location
+ paleomix                      | 933750 | normal    | paleomix: Port to Python3 needed
+ paleomix                      | 937232 | normal    | paleomix: Python2 removal in sid/bullseye
+ pbalign                       | 937252 | serious   | pbalign: Python2 removal in sid/bullseye
+ pbbam                         | 829741 | important | pbbam: FTBFS (32-bit): pbmerge assertion failure
+ pbbarcode                     | 937253 | serious   | pbbarcode: Python2 removal in sid/bullseye
+ pbgenomicconsensus            | 937255 | serious   | pbgenomicconsensus: Python2 removal in sid/bullseye
+ pbh5tools                     | 937256 | serious   | pbh5tools: Python2 removal in sid/bullseye
+ pdb2pqr                       | 937262 | normal    | pdb2pqr: Python2 removal in sid/bullseye
+ phast                         | 911983 | serious   | phast FTBFS on architectures where char is unsigned
+ phast                         | 951660 | serious   | src:phast: fails to migrate to testing for too long
+ pixelmed                      | 706130 | normal    | Add support for MammographyCADSR
+ pixelmed                      | 706132 | normal    | javax.xml.transform.TransformerConfigurationException: Impossible de compiler la feuille de style
+ pixelmed                      | 706143 | normal    | Missing DoseUtilityLogOfReportMultiple.png
+ pixelmed                      | 716971 | normal    | pixelmed-java: Incorrect handling of C-ECHO-RQ
+ pixelmed                      | 728569 | normal    | Add PixelMed SCP
+ praat                         | 919490 | normal    | praat FTCBFS: many reasons
+ profnet                       | 905206 | serious   | profnet: autopkgtest regression
+ profphd                       | 897605 | normal    | profphd failure in stretch
+ profphd                       | 942064 | grave     | profphd: autopkgtest failure
+ prokka                        | 924128 | normal    | prokka: creates world writable directory tree /var/lib/prokka/*
+ psychopy                      | 730810 | normal    | psychopy: Movie support suboptimal
+ psychopy                      | 829424 | normal    | psychopy: ioHub uses inappropriate PID file location
+ pynast                        | 937488 | normal    | pynast: Python2 removal in sid/bullseye
+ pynast                        | 948081 | serious   | pynast build depends on and recommends the removed blast2 transitional package
+ python-biom-format            | 820060 | normal    | python-biom-format: broken on big-endian architectures
+ python-biom-format            | 950929 | normal    | python-biom-format: FTBFS with pandas 1.0: test failures
+ python-cobra                  | 951690 | serious   | src:python-cobra: fails to migrate to testing for too long
+ python-cogent                 | 950474 | important | python-cogent FTBFS on armel and i386: test failures
+ python-intervaltree-bio       | 920545 | serious   | python-intervaltree breaks python-intervaltree-bio autopkgtest
+ python-mne                    | 733270 | wishlist  | please provide python-mne-doc package
+ python-mne                    | 733271 | minor     | ship all data files needed for testing
+ python-pbcore                 | 860158 | normal    | python-pbcore: prints warnings with recent h5py on ppc64el
+ python-pbcore                 | 919052 | normal    | python-pbcore: some docs for pbcore are not found
+ python-pysam                  | 938092 | normal    | python-pysam: Python2 removal in sid/bullseye
+ python-ruffus                 | 841073 | wishlist  | python-ruffus: Needs 18 GB of RAM to build
+ q2-demux                      | 950933 | normal    | q2-demux: FTBFS with pandas 1.0: test failures
+ q2templates                   | 950931 | normal    | q2templates: FTBFS with pandas 1.0: test failures
+ q2-types                      | 950932 | normal    | q2-types: FTBFS with pandas 1.0: test failures
+ qcumber                       | 883260 | wishlist  | qcumber: [INLT:ru] Russian translation of debconf template
+ qcumber                       | 913936 | wishlist  | qcumber: [INTL:pt_BR] Brazilian Portuguese debconf templates translation
+ qiime                         | 950842 | important | autopkg tests fail with Python 3.8
+ qrisk2                        | 912118 | normal    | qrisk2: 2017 upstream release
+ qrisk2                        | 912119 | normal    | qrisk2: please provide qrisk3
+ rapmap                        | 909766 | important | Use Debian packaged spdlog instead of code copy of old version
+ relion                        | 952003 | serious   | relion: FTBFS: src/mpi.cpp:56:23: error: call to ‘MPI_Errhandler_set’ declared with attribute error: MPI_Errhandler_set was removed in MPI-3.0.  Use MPI_Comm_set_errhandler instead.
+ salmon                        | 952102 | serious   | salmon: FTBFS: SalmonAlevin.cpp:780:6: error: ‘class rapmap::utils::MappingConfig’ has no member named ‘maxSlack’
+ sambamba                      | 938431 | normal    | sambamba: Python2 removal in sid/bullseye
+ sambamba                      | 948919 | serious   | sambamba FTBFS: undefined reference to 'cram_to_bam'
+ seqan                         | 943260 | normal    | seqan: Python2 removal in sid/bullseye
+ seqan                         | 952203 | serious   | seqan: FTBFS: dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4 returned exit code 2
+ seqan2                        | 892222 | normal    | seqan2: FTBFS on hppa: app_test_seqan_tcoffee fails on 2trx.mlcs.fasta
+ seqan2                        | 917851 | important | seqan2 2.4.0+dfsg-9: FTBFS, alignment problem
+ simpleitk                     | 949355 | serious   | simpleitk FTBFS: test failures
+ smalr                         | 938500 | serious   | smalr: Python2 removal in sid/bullseye
+ smrtanalysis                  | 945737 | serious   | smrtanalysis: Python2 removal in sid/bullseye
+ snakemake                     | 943956 | wishlist  | snakemake: please make the build reproducible
+ snap                          | 927011 | minor     | snap: Package info contains a 404 url
+ snap-aligner                  | 848589 | normal    | snap-aligner: Build requires 188 GB of memory (fortunately not used, just allocated)
+ sofa-framework                | 588278 | minor     | sofa-tutorials: Sofa tutorials config file tutorial.pro uses SOFA_DIR=../.. that is incorrect
+ sofa-framework                | 639986 | normal    | sofa-apps: the menu Help in the sofa GUI do not show any enabled menu point e.g about, ...
+ sofa-framework                | 735099 | normal    | sofa-framework: FTBFS on sparc, powerpc (and ia64)
+ sofa-framework                | 875184 | serious   | [sofa-framework] Future Qt4 removal from Buster
+ spades                        | 853113 | normal    | spades: Fails to build with unhelpful error message in a "low" memory machine
+ sprai                         | 943280 | normal    | sprai: Python2 removal in sid/bullseye
+ sra-sdk                       | 943231 | normal    | sra-sdk: Python2 removal in sid/bullseye
+ sumaclust                     | 952093 | serious   | sumaclust: FTBFS: mtcompare_sumaclust.c:18:10: fatal error: libfasta/sequence.h: No such file or directory
+ tree-puzzle                   | 806214 | normal    | tree-puzzle: Package fails test suite
+ tree-puzzle                   | 890790 | minor     | tree-puzzle: Please provide autopkgtest
+ tree-puzzle                   | 951984 | serious   | tree-puzzle: FTBFS: mpi.h:322:57: error: static assertion failed: "MPI_Address was removed in MPI-3.0.  Use MPI_Get_address instead."
+ treeviewx                     | 846481 | minor     | src:treeviewx: Please remove statically linked code copy of libncl
+ tvc                           | 945720 | normal    | tvc: Python2 removal in sid/bullseye
+ unanimity                     | 938751 | serious   | unanimity: Python2 removal in sid/bullseye
+ unanimity                     | 939506 | serious   | unanimity ftbfs in unstable
+ xmedcon                       | 671828 | normal    | xmedcon: Cannot open file with YBR photometric interpretation
+ xmedcon                       | 779707 | normal    | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
+ xmedcon                       | 924017 | normal    | desktop entry
+(196 rows)
+



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7a262c4e3e1f1b797db62788d3d7fda59331fa89

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View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7a262c4e3e1f1b797db62788d3d7fda59331fa89
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