[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Wed Feb 26 13:45:43 GMT 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
296a7943 by Andreas Tille at 2020-02-26T13:45:38+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,221 +1,196 @@
-Last-Update: Wed, 26 Feb 2020 01:42:03 +0000
+Last-Update: Wed, 26 Feb 2020 13:42:03 +0000
 
  Source                        | Vote   | Tasks                                      |                                 Tags                                 
 -------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    173 | {imaging}                                  | 
- orthanc                       |     92 | {imaging,practice}                         | 
- gdcm                          |     52 | {imaging-dev}                              | 
- orthanc-wsi                   |     39 | {his,laboratory,oncology,practice,imaging} | 
- cfflib                        |     37 | {imaging-dev}                              | 
- dcm2niix                      |     34 | {imaging}                                  | 
- amide                         |     32 | {imaging}                                  | 
- dicomscope                    |     28 | {imaging}                                  | 
- medicalterms                  |     26 | {tools}                                    | 
- dicom3tools                   |     24 | {imaging}                                  | 
- htsjdk                        |     20 | {bio-dev}                                  | 
- gdcm                          |     17 | {imaging}                                  | 
+ dcmtk                         |    172 | {imaging}                                  | 
+ orthanc                       |     91 | {imaging,practice}                         | 
+ gdcm                          |     49 | {imaging-dev}                              | 
+ orthanc-wsi                   |     38 | {his,laboratory,oncology,practice,imaging} | 
+ cfflib                        |     35 | {imaging-dev}                              | 
+ dcm2niix                      |     33 | {imaging}                                  | 
+ amide                         |     31 | {imaging}                                  | 
+ dicomscope                    |     25 | {imaging}                                  | 
+ medicalterms                  |     25 | {tools}                                    | 
+ dicom3tools                   |     22 | {imaging}                                  | 
+ htsjdk                        |     19 | {bio-dev}                                  | 
  gnumed-server                 |     17 | {practice}                                 | 
- ngs-sdk                       |     15 | {bio-dev}                                  | 
- invesalius                    |     13 | {imaging}                                  | 
- pixelmed                      |     13 | {imaging}                                  | 
- adun.app                      |     12 | {bio}                                      | 
+ gdcm                          |     16 | {imaging}                                  | 
+ ngs-sdk                       |     13 | {bio-dev}                                  | 
+ pixelmed                      |     12 | {imaging}                                  | 
+ adun.app                      |     11 | {bio}                                      | 
  insighttoolkit4               |     11 | {imaging-dev}                              | 
- minc-tools                    |     11 | {imaging}                                  | 
- gdcm                          |     10 | {imaging-dev}                              | 
- jebl2                         |     10 | {bio-dev}                                  | 
- king                          |     10 | {imaging,typesetting}                      | 
- mia                           |     10 | {imaging}                                  | 
- tree-puzzle                   |     10 | {bio-phylogeny,bio,cloud}                  | 
- librg-utils-perl              |      9 | {bio}                                      | 
- plastimatch                   |      9 | {imaging}                                  | 
+ invesalius                    |     11 | {imaging}                                  | 
+ minc-tools                    |     10 | {imaging}                                  | 
+ jebl2                         |      9 | {bio-dev}                                  | 
+ king                          |      9 | {imaging,typesetting}                      | 
+ mia                           |      9 | {imaging}                                  | 
+ tree-puzzle                   |      9 | {bio-phylogeny,bio,cloud}                  | 
  vtk-dicom                     |      9 | {imaging}                                  | 
- biojava-live                  |      8 | {bio-dev}                                  | 
- fastlink                      |      8 | {bio,cloud}                                | 
- melting                       |      8 | {cloud,bio}                                | 
- ncbi-seg                      |      8 | {bio}                                      | 
- norsp                         |      8 | {bio}                                      | 
- psychopy                      |      8 | {psychology}                               | 
- maqview                       |      7 | {bio}                                      | 
- ngs-sdk                       |      7 | {bio-dev}                                  | 
+ gdcm                          |      8 | {imaging-dev}                              | 
+ librg-utils-perl              |      8 | {bio}                                      | 
+ plastimatch                   |      8 | {imaging}                                  | 
+ biojava-live                  |      7 | {bio-dev}                                  | 
+ fastlink                      |      7 | {bio,cloud}                                | 
+ melting                       |      7 | {cloud,bio}                                | 
+ ncbi-seg                      |      7 | {bio}                                      | 
+ norsp                         |      7 | {bio}                                      | 
  obitools                      |      7 | {bio}                                      | 
- openslide                     |      7 | {imaging}                                  | 
- sortmerna                     |      7 | {bio}                                      | 
- staden                        |      7 | {bio}                                      | 
- cgview                        |      6 | {bio}                                      | 
- diamond-aligner               |      6 | {bio}                                      | 
- embassy-domainatrix           |      6 | {bio,cloud}                                | 
- freecontact                   |      6 | {cloud,bio}                                | 
- ipig                          |      6 | {bio}                                      | 
- jaligner                      |      6 | {bio}                                      | 
- king-probe                    |      6 | {bio}                                      | 
- libdivsufsort                 |      6 | {bio-dev}                                  | 
- mapsembler2                   |      6 | {cloud,bio}                                | 
- mipe                          |      6 | {bio,cloud}                                | 
- ncbi-entrez-direct            |      6 | {bio}                                      | 
- neobio                        |      6 | {bio,cloud}                                | 
+ psychopy                      |      7 | {psychology}                               | 
+ maqview                       |      6 | {bio}                                      | 
+ openslide                     |      6 | {imaging}                                  | 
  orthanc-webviewer             |      6 | {imaging}                                  | 
- sibsim4                       |      6 | {bio,cloud}                                | 
- sigma-align                   |      6 | {bio,bio-phylogeny,cloud}                  | 
- ampliconnoise                 |      5 | {bio,cloud}                                | 
- anfo                          |      5 | {cloud,bio}                                | 
- arden                         |      5 | {cloud,bio}                                | 
- brig                          |      5 | {bio}                                      | 
- dazzdb                        |      5 | {bio}                                      | 
+ sortmerna                     |      6 | {bio}                                      | 
+ staden                        |      6 | {bio}                                      | 
+ cgview                        |      5 | {bio}                                      | 
  dicompyler                    |      5 | {oncology}                                 | 
- ea-utils                      |      5 | {bio}                                      | 
- edtsurf                       |      5 | {bio}                                      | 
- embassy-domalign              |      5 | {cloud,bio}                                | 
- gatb-core                     |      5 | {bio}                                      | 
- idba                          |      5 | {cloud,bio}                                | 
- indelible                     |      5 | {bio}                                      | 
- jellyfish1                    |      5 | {bio}                                      | 
- mlv-smile                     |      5 | {cloud,bio}                                | 
+ embassy-domainatrix           |      5 | {bio,cloud}                                | 
+ freecontact                   |      5 | {cloud,bio}                                | 
+ ipig                          |      5 | {bio}                                      | 
+ jaligner                      |      5 | {bio}                                      | 
+ king-probe                    |      5 | {bio}                                      | 
+ libdivsufsort                 |      5 | {bio-dev}                                  | 
+ mapsembler2                   |      5 | {cloud,bio}                                | 
+ mipe                          |      5 | {bio,cloud}                                | 
+ ncbi-entrez-direct            |      5 | {bio}                                      | 
+ neobio                        |      5 | {bio,cloud}                                | 
+ ngs-sdk                       |      5 | {bio-dev}                                  | 
  openslide                     |      5 | {imaging-dev}                              | 
- paml                          |      5 | {bio}                                      | 
- phyutility                    |      5 | {cloud,bio}                                | 
- piler                         |      5 | {bio}                                      | 
- predictprotein                |      5 | {bio}                                      | 
- prime-phylo                   |      5 | {bio,cloud}                                | 
- seqtools                      |      5 | {bio}                                      | 
- squizz                        |      5 | {bio,cloud}                                | 
- transtermhp                   |      5 | {bio}                                      | 
- treeview                      |      5 | {bio-phylogeny,bio}                        | 
- abacas                        |      4 | {bio}                                      | 
+ sibsim4                       |      5 | {bio,cloud}                                | 
+ sigma-align                   |      5 | {bio,bio-phylogeny,cloud}                  | 
+ ampliconnoise                 |      4 | {bio,cloud}                                | 
+ anfo                          |      4 | {cloud,bio}                                | 
+ arden                         |      4 | {cloud,bio}                                | 
  bandage                       |      4 | {bio}                                      | 
- biomaj3-cli                   |      4 | {cloud}                                    | 
- bio-tradis                    |      4 | {bio-dev,bio}                              | 
- bppsuite                      |      4 | {bio}                                      | 
- canu                          |      4 | {bio}                                      | 
- ecopcr                        |      4 | {bio}                                      | 
- embassy-domsearch             |      4 | {bio,cloud}                                | 
+ brig                          |      4 | {bio}                                      | 
+ dazzdb                        |      4 | {bio}                                      | 
+ diamond-aligner               |      4 | {bio}                                      | 
+ ea-utils                      |      4 | {bio}                                      | 
+ edtsurf                       |      4 | {bio}                                      | 
+ embassy-domalign              |      4 | {cloud,bio}                                | 
  estscan                       |      4 | {bio}                                      | 
- fitgcp                        |      4 | {cloud,bio}                                | 
- gasic                         |      4 | {cloud,bio}                                | 
+ gatb-core                     |      4 | {bio}                                      | 
  ghmm                          |      4 | {bio}                                      | 
+ idba                          |      4 | {cloud,bio}                                | 
+ indelible                     |      4 | {bio}                                      | 
+ jellyfish1                    |      4 | {bio}                                      | 
  lagan                         |      4 | {bio}                                      | 
- libncl                        |      4 | {bio}                                      | 
- mauve-aligner                 |      4 | {bio}                                      | 
- mhap                          |      4 | {bio,bio-ngs}                              | 
- microbegps                    |      4 | {bio}                                      | 
+ mlv-smile                     |      4 | {cloud,bio}                                | 
  nutsqlite                     |      4 | {tools}                                    | 
  orthanc-dicomweb              |      4 | {imaging}                                  | 
  orthanc-mysql                 |      4 | {imaging}                                  | 
- paraclu                       |      4 | {bio,cloud}                                | 
- perm                          |      4 | {cloud,bio}                                | 
- proalign                      |      4 | {bio,bio-phylogeny}                        | 
- probabel                      |      4 | {cloud,bio}                                | 
+ paml                          |      4 | {bio}                                      | 
+ phyutility                    |      4 | {cloud,bio}                                | 
+ piler                         |      4 | {bio}                                      | 
+ predictprotein                |      4 | {bio}                                      | 
+ prime-phylo                   |      4 | {bio,cloud}                                | 
  pymia                         |      4 | {imaging-dev}                              | 
- radiant                       |      4 | {bio}                                      | 
- rdp-alignment                 |      4 | {bio}                                      | 
- rdp-readseq                   |      4 | {bio}                                      | 
- repeatmasker-recon            |      4 | {bio}                                      | 
- saint                         |      4 | {bio}                                      | 
- salmon                        |      4 | {bio}                                      | 
  seqtools                      |      4 | {bio}                                      | 
- spread-phy                    |      4 | {bio-phylogeny,bio}                        | 
+ squizz                        |      4 | {bio,cloud}                                | 
  tracetuner                    |      4 | {bio}                                      | 
+ transtermhp                   |      4 | {bio}                                      | 
+ treeview                      |      4 | {bio-phylogeny,bio}                        | 
  velvetoptimiser               |      4 | {bio}                                      | 
  zalign                        |      4 | {cloud,bio}                                | 
- alter-sequence-alignment      |      3 | {bio}                                      | 
- andi                          |      3 | {bio}                                      | 
- assemblytics                  |      3 | {bio}                                      | 
- baitfisher                    |      3 | {bio}                                      | 
- bart-view                     |      3 | {imaging}                                  | 
- beads                         |      3 | {bio}                                      | 
+ abacas                        |      3 | {bio}                                      | 
  beast2-mcmc                   |      3 | {bio}                                      | 
- beast-mcmc                    |      3 | {bio-phylogeny,bio}                        | 
+ biomaj3-cli                   |      3 | {cloud}                                    | 
  biomaj3-daemon                |      3 | {bio}                                      | 
- bio-rainbow                   |      3 | {bio}                                      | 
- bitseq                        |      3 | {bio}                                      | 
+ bio-tradis                    |      3 | {bio-dev,bio}                              | 
  blasr                         |      3 | {bio,bio-ngs}                              | 
- centrifuge                    |      3 | {bio}                                      | 
- clonalframeml                 |      3 | {bio}                                      | 
- clonalorigin                  |      3 | {bio}                                      | 
+ bppsuite                      |      3 | {bio}                                      | 
+ canu                          |      3 | {bio}                                      | 
  cluster3                      |      3 | {bio}                                      | 
- codonw                        |      3 | {bio}                                      | 
- cufflinks                     |      3 | {bio,cloud}                                | 
- daligner                      |      3 | {bio,bio-ngs}                              | 
- dascrubber                    |      3 | {bio}                                      | 
  delly                         |      3 | {bio}                                      | 
- dindel                        |      3 | {bio}                                      | 
- dwgsim                        |      3 | {bio}                                      | 
- elastix                       |      3 | {imaging}                                  | 
+ ecopcr                        |      3 | {bio}                                      | 
  elph                          |      3 | {bio}                                      | 
- fastml                        |      3 | {bio}                                      | 
- freebayes                     |      3 | {bio}                                      | 
- fsm-lite                      |      3 | {bio}                                      | 
+ embassy-domsearch             |      3 | {bio,cloud}                                | 
+ fitgcp                        |      3 | {cloud,bio}                                | 
+ gasic                         |      3 | {cloud,bio}                                | 
  getdata                       |      3 | {bio}                                      | 
- harvest-tools                 |      3 | {bio}                                      | 
- hinge                         |      3 | {bio}                                      | 
- jmodeltest                    |      3 | {bio,bio-phylogeny}                        | 
- lamarc                        |      3 | {bio}                                      | 
  libminc                       |      3 | {imaging-dev}                              | 
- libpal-java                   |      3 | {bio-dev}                                  | 
- librdp-taxonomy-tree-java     |      3 | {bio-dev}                                  | 
+ libncl                        |      3 | {bio}                                      | 
  libsbml                       |      3 | {bio-dev}                                  | 
- logol                         |      3 | {bio}                                      | 
  lucy                          |      3 | {bio}                                      | 
- maffilter                     |      3 | {bio}                                      | 
- mptp                          |      3 | {bio}                                      | 
+ mauve-aligner                 |      3 | {bio}                                      | 
+ mhap                          |      3 | {bio,bio-ngs}                              | 
+ microbegps                    |      3 | {bio}                                      | 
  mrs                           |      3 | {bio}                                      | 
- murasaki                      |      3 | {bio}                                      | 
- nanook                        |      3 | {bio}                                      | 
- phast                         |      3 | {bio}                                      | 
- placnet                       |      3 | {bio}                                      | 
- poretools                     |      3 | {bio}                                      | 
- pscan-chip                    |      3 | {bio}                                      | 
- pscan-tfbs                    |      3 | {bio}                                      | 
+ paraclu                       |      3 | {bio,cloud}                                | 
+ perm                          |      3 | {cloud,bio}                                | 
+ proalign                      |      3 | {bio,bio-phylogeny}                        | 
+ probabel                      |      3 | {cloud,bio}                                | 
  qrisk2                        |      3 | {practice}                                 | 
- quorum                        |      3 | {bio}                                      | 
- rdp-classifier                |      3 | {bio}                                      | 
+ radiant                       |      3 | {bio}                                      | 
+ rdp-alignment                 |      3 | {bio}                                      | 
+ rdp-readseq                   |      3 | {bio}                                      | 
  relion                        |      3 | {bio}                                      | 
- rtax                          |      3 | {bio,cloud}                                | 
- runcircos-gui                 |      3 | {bio}                                      | 
- scythe                        |      3 | {bio}                                      | 
- seer                          |      3 | {bio}                                      | 
+ repeatmasker-recon            |      3 | {bio}                                      | 
+ saint                         |      3 | {bio}                                      | 
+ salmon                        |      3 | {bio}                                      | 
  segemehl                      |      3 | {bio}                                      | 
- seqmagick                     |      3 | {bio}                                      | 
  seqtools                      |      3 | {bio}                                      | 
- sickle                        |      3 | {bio}                                      | 
- sprai                         |      3 | {bio}                                      | 
- sumatra                       |      3 | {bio}                                      | 
- transrate-tools               |      3 | {bio}                                      | 
+ spread-phy                    |      3 | {bio-phylogeny,bio}                        | 
  tvc                           |      3 | {bio}                                      | 
  yaha                          |      3 | {bio}                                      | 
+ alter-sequence-alignment      |      2 | {bio}                                      | 
+ andi                          |      2 | {bio}                                      | 
+ assemblytics                  |      2 | {bio}                                      | 
+ baitfisher                    |      2 | {bio}                                      | 
+ bart-view                     |      2 | {imaging}                                  | 
+ beads                         |      2 | {bio}                                      | 
+ beast-mcmc                    |      2 | {bio-phylogeny,bio}                        | 
+ bio-rainbow                   |      2 | {bio}                                      | 
+ bitseq                        |      2 | {bio}                                      | 
+ centrifuge                    |      2 | {bio}                                      | 
+ clonalframeml                 |      2 | {bio}                                      | 
+ clonalorigin                  |      2 | {bio}                                      | 
+ codonw                        |      2 | {bio}                                      | 
+ cufflinks                     |      2 | {bio,cloud}                                | 
+ daligner                      |      2 | {bio,bio-ngs}                              | 
+ dascrubber                    |      2 | {bio}                                      | 
+ dindel                        |      2 | {bio}                                      | 
+ dwgsim                        |      2 | {bio}                                      | 
+ elastix                       |      2 | {imaging}                                  | 
+ fastml                        |      2 | {bio}                                      | 
+ fsm-lite                      |      2 | {bio}                                      | 
+ harvest-tools                 |      2 | {bio}                                      | 
+ hinge                         |      2 | {bio}                                      | 
  igor                          |      2 | {bio}                                      | 
+ jmodeltest                    |      2 | {bio,bio-phylogeny}                        | 
+ lamarc                        |      2 | {bio}                                      | 
  libgff                        |      2 | {bio-dev}                                  | 
- libsmithwaterman              |      2 | {bio}                                      | 
- metaphlan2                    |      2 | {bio}                                      | 
+ libpal-java                   |      2 | {bio-dev}                                  | 
+ librdp-taxonomy-tree-java     |      2 | {bio-dev}                                  | 
+ logol                         |      2 | {bio}                                      | 
+ maffilter                     |      2 | {bio}                                      | 
+ mptp                          |      2 | {bio}                                      | 
+ murasaki                      |      2 | {bio}                                      | 
+ nanook                        |      2 | {bio}                                      | 
  orthanc-postgresql            |      2 | {imaging}                                  | 
- pal2nal                       |      2 | {bio}                                      | 
- parsnp                        |      2 | {bio}                                      | 
- patman                        |      2 | {bio}                                      | 
  pbdagcon                      |      2 | {bio}                                      | 
- phipack                       |      2 | {bio}                                      | 
- phybin                        |      2 | {bio}                                      | 
+ phast                         |      2 | {bio}                                      | 
  pilon                         |      2 | {bio}                                      | 
+ placnet                       |      2 | {bio}                                      | 
  plasmidseeker                 |      2 | {bio}                                      | 
- prottest                      |      2 | {bio,bio-phylogeny}                        | 
- qcumber                       |      2 | {bio}                                      | 
- rambo-k                       |      2 | {bio}                                      | 
+ poretools                     |      2 | {bio}                                      | 
+ pscan-chip                    |      2 | {bio}                                      | 
+ pscan-tfbs                    |      2 | {bio}                                      | 
+ quorum                        |      2 | {bio}                                      | 
  rampler                       |      2 | {bio}                                      | 
+ rdp-classifier                |      2 | {bio}                                      | 
  relion                        |      2 | {bio}                                      | 
- roguenarok                    |      2 | {bio}                                      | 
+ rtax                          |      2 | {bio,cloud}                                | 
+ runcircos-gui                 |      2 | {bio}                                      | 
  samblaster                    |      2 | {bio}                                      | 
- scrm                          |      2 | {bio}                                      | 
- seqsero                       |      2 | {bio}                                      | 
- sga                           |      2 | {bio}                                      | 
- snap-aligner                  |      2 | {bio}                                      | 
- soapaligner                   |      2 | {bio}                                      | 
- soapsnp                       |      2 | {bio}                                      | 
- spaced                        |      2 | {bio}                                      | 
- stacks                        |      2 | {bio}                                      | 
- suitename                     |      2 | {bio}                                      | 
- sumaclust                     |      2 | {bio}                                      | 
- surankco                      |      2 | {bio}                                      | 
+ scythe                        |      2 | {bio}                                      | 
+ seer                          |      2 | {bio}                                      | 
+ seqtools                      |      2 | {bio}                                      | 
+ sickle                        |      2 | {bio}                                      | 
+ sprai                         |      2 | {bio}                                      | 
+ sumatra                       |      2 | {bio}                                      | 
  sweed                         |      2 | {bio}                                      | 
- tnseq-transit                 |      2 | {bio}                                      | 
  trace2dbest                   |      2 | {bio}                                      | 
+ transrate-tools               |      2 | {bio}                                      | 
  vsearch                       |      2 | {bio}                                      | 
  acedb                         |      1 | {bio,cloud}                                | 
  atropos                       |      1 | {bio}                                      | 
@@ -224,25 +199,50 @@ Last-Update: Wed, 26 Feb 2020 01:42:03 +0000
  edflib                        |      1 | {imaging-dev}                              | 
  embassy-phylip                |      1 | {bio,cloud}                                | 
  emmax                         |      1 | {bio}                                      | 
+ freebayes                     |      1 | {bio}                                      | 
  hunspell-en-med               |      1 | {tools}                                    | 
  kma                           |      1 | {bio}                                      | 
  kmerresistance                |      1 | {bio}                                      | 
  libbio-mage-utils-perl        |      1 | {bio-dev}                                  | 
  libctapimkt                   |      1 | {practice}                                 | 
  libsmithwaterman              |      1 | {bio-dev}                                  | 
+ libsmithwaterman              |      1 | {bio}                                      | 
  libvistaio                    |      1 | {imaging-dev}                              | 
  maxflow                       |      1 | {imaging-dev}                              | 
  medicalterms                  |      1 | {tools}                                    | 
  mencal                        |      1 | {tools}                                    | 
- opensurgsim                   |      1 | {imaging-dev}                              | 
+ metaphlan2                    |      1 | {bio}                                      | 
+ pal2nal                       |      1 | {bio}                                      | 
+ parsnp                        |      1 | {bio}                                      | 
+ patman                        |      1 | {bio}                                      | 
+ phipack                       |      1 | {bio}                                      | 
+ phybin                        |      1 | {bio}                                      | 
  pilercr                       |      1 | {bio}                                      | 
+ prottest                      |      1 | {bio,bio-phylogeny}                        | 
+ qcumber                       |      1 | {bio}                                      | 
+ rambo-k                       |      1 | {bio}                                      | 
  relion                        |      1 | {bio}                                      | 
+ roguenarok                    |      1 | {bio}                                      | 
  samtools-legacy               |      1 | {bio-dev}                                  | 
+ scrm                          |      1 | {bio}                                      | 
  seqan                         |      1 | {bio-dev}                                  | 
  seq-gen                       |      1 | {bio}                                      | 
+ seqmagick                     |      1 | {bio}                                      | 
+ seqsero                       |      1 | {bio}                                      | 
+ sga                           |      1 | {bio}                                      | 
  sift                          |      1 | {bio}                                      | 
  skesa                         |      1 | {bio}                                      | 
+ snap-aligner                  |      1 | {bio}                                      | 
+ soapaligner                   |      1 | {bio}                                      | 
+ soapsnp                       |      1 | {bio}                                      | 
+ spaced                        |      1 | {bio}                                      | 
  srf                           |      1 | {bio-dev}                                  | 
+ stacks                        |      1 | {bio}                                      | 
+ stringtie                     |      1 | {bio}                                      | 
+ suitename                     |      1 | {bio}                                      | 
+ sumaclust                     |      1 | {bio}                                      | 
+ surankco                      |      1 | {bio}                                      | 
+ tnseq-transit                 |      1 | {bio}                                      | 
  tree-puzzle                   |      1 | {cloud,bio,bio-phylogeny}                  | 
  varscan                       |      1 | {bio}                                      | 
  volpack                       |      1 | {imaging-dev}                              | 
@@ -295,6 +295,7 @@ Last-Update: Wed, 26 Feb 2020 01:42:03 +0000
  ncbi-vdb                      |      0 | {bio-dev}                                  | 
  ngs-sdk                       |      0 | {bio-dev}                                  | 
  opencfu                       |      0 | {laboratory}                               | 
+ opensurgsim                   |      0 | {imaging-dev}                              | 
  orthanc-imagej                |      0 | {imaging}                                  | 
  oscar                         |      0 | {tools,data,practice}                      | 
  papyrus                       |      0 | {imaging-dev}                              | 
@@ -312,7 +313,6 @@ Last-Update: Wed, 26 Feb 2020 01:42:03 +0000
  smrtanalysis                  |      0 | {bio}                                      | 
  solvate                       |      0 | {bio}                                      | 
  spaln                         |      0 | {bio}                                      | 
- stringtie                     |      0 | {bio}                                      | 
  thesias                       |      0 | {bio}                                      | 
  trim-galore                   |      0 | {bio}                                      | 
  varna                         |      0 | {bio}                                      | 


=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Wed, 26 Feb 2020 01:42:03 +0000
+Last-Update: Wed, 26 Feb 2020 13:42:03 +0000
 
  source                        |             version             |        upstream_version         |                       uploaders                                             | Last uploader        |     Last uploaded      
 -------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -16,7 +16,7 @@ Last-Update: Wed, 26 Feb 2020 01:42:03 +0000
  biomaj3-process               | 3.0.15                          | 3.0.16                          | Olivier Sallou                                                              | Olivier Sallou       | 2019-11-12 11:20:38+00
  charls                        | 2.0.0                           | 2.1.0                           | Andreas Tille                                                               | Andreas Tille        | 2019-01-10 20:10:56+00
  clonalframeml                 | 1.11                            | 1.12                            | Andreas Tille                                                               | Andreas Tille        | 2019-05-23 07:03:34+00
- cwltool                       | 2.0.20200126090152              | 2.0.20200219182542              | Michael R. Crusoe                                                           | Michael R. Crusoe    | 2020-02-14 12:34:12+00
+ cwltool                       | 2.0.20200126090152              | 2.0.20200224214940              | Michael R. Crusoe                                                           | Michael R. Crusoe    | 2020-02-14 12:34:12+00
  dcm2niix                      | 1.0.20181125                    | 1.0.20190902                    | Ghislain Antony Vaillant                                                    | Andreas Tille        | 2019-01-30 10:04:52+00
  ea-utils                      | 1.1.2                           | 1.04.807                        | Andreas Tille,Tim Booth                                                     | Andreas Tille        | 2018-04-26 21:48:01+00
  elastix                       | 4.9.0                           | 5.0.0                           | Gert Wollny,Steve M. Robbins                                                | Andreas Tille        | 2019-01-15 11:50:11+00
@@ -54,6 +54,7 @@ Last-Update: Wed, 26 Feb 2020 01:42:03 +0000
  pbcopper                      | 1.3.0                           | 1.4.0                           | Andreas Tille                                                               | Andreas Tille        | 2020-01-29 08:51:15+00
  pbgenomicconsensus            | 2.3.2                           | 2.3.3                           | Andreas Tille                                                               | Liubov Chuprikova    | 2019-04-07 15:33:36+00
  pbh5tools                     | 0.8.0+git20170929.58d54ff       | 0.8.0+git20181212.9fa8fc4       | Afif Elghraoui                                                              | Andreas Tille        | 2018-07-13 14:49:05+00
+ pbseqlib                      | 5.3.3                           | 5.3.4                           | Andreas Tille                                                               | Andreas Tille        | 2020-01-29 15:04:33+00
  picard-tools                  | 2.18.25                         | 2.21.9                          | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille        | 2019-02-04 09:20:37+00
  plink2                        | 2.00~a3-200217                  | 200222                          | Dylan Aïssi                                                                | Dylan Aïssi         | 2020-02-19 06:19:18+00
  prokka                        | 1.14.5                          | 1.14.6                          | Andreas Tille,Michael R. Crusoe                                             | Michael R. Crusoe    | 2019-12-04 11:00:31+00
@@ -78,9 +79,10 @@ Last-Update: Wed, 26 Feb 2020 01:42:03 +0000
  sumatra                       | 1.0.31                          | 1.0.34                          | Andreas Tille,Tim Booth                                                     | Andreas Tille        | 2018-10-16 10:06:33+00
  t-coffee                      | 12.00.7fb08c2                   | 13.41.0.28bdc39                 | Andreas Tille,Steffen Moeller                                               | Andreas Tille        | 2019-02-15 07:57:10+00
  unanimity                     | 3.3.0                           | 4.2.0                           | Afif Elghraoui,Andreas Tille                                                | Adrian Bunk          | 2019-02-06 07:34:42+00
+ vg                            | 1.21.0                          | 1.22.0                          | Michael R. Crusoe                                                           | Michael R. Crusoe    | 2020-02-25 19:09:28+00
  vsearch                       | 2.14.1                          | 2.14.2                          | Andreas Tille,Tim Booth                                                     | Andreas Tille        | 2019-12-17 10:07:09+00
  xmedcon                       | 0.16.1                          | 0.16.2                          | Andreas Tille,Roland Marcus Rutschmann                                      | Andreas Tille        | 2019-01-25 18:23:59+00
-(78 rows)
+(80 rows)
 
 
  source                        |   id   | severity  |                                                                                                                                                                                                                           title                                                                                                                                                                                                                           
@@ -267,9 +269,6 @@ Last-Update: Wed, 26 Feb 2020 01:42:03 +0000
  sofa-framework                | 735099 | normal    | sofa-framework: FTBFS on sparc, powerpc (and ia64)
  sofa-framework                | 875184 | serious   | [sofa-framework] Future Qt4 removal from Buster
  spades                        | 853113 | normal    | spades: Fails to build with unhelpful error message in a "low" memory machine
- spdlog                        | 951960 | serious   | purify: FTBFS: ld: ../purify/libpurify.so.2.0.0: undefined reference to `fmt::v6::internal::basic_data<void>::signs'
- spdlog                        | 951995 | serious   | sopt: FTBFS: core.h:266: undefined reference to `fmt::v6::internal::assert_fail(char const*, int, char const*)'
- spdlog                        | 952543 | serious   | Using old libfmt breaks sopt and purify
  sprai                         | 943280 | normal    | sprai: Python2 removal in sid/bullseye
  sra-sdk                       | 943231 | normal    | sra-sdk: Python2 removal in sid/bullseye
  sumaclust                     | 952093 | serious   | sumaclust: FTBFS: mtcompare_sumaclust.c:18:10: fatal error: libfasta/sequence.h: No such file or directory
@@ -283,5 +282,5 @@ Last-Update: Wed, 26 Feb 2020 01:42:03 +0000
  xmedcon                       | 671828 | normal    | xmedcon: Cannot open file with YBR photometric interpretation
  xmedcon                       | 779707 | normal    | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
  xmedcon                       | 924017 | normal    | desktop entry
-(198 rows)
+(195 rows)
 



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/296a7943c28c21532d8a7156e077f73ce25aaa3c

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