[med-svn] [Git][med-team/bbmap][upstream] New upstream version 38.79+dfsg

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / bbmap


Commits:
7e91981b by Andreas Tille at 2020-02-27T11:27:55+01:00
New upstream version 38.79+dfsg
- - - - -


30 changed files:

- README.md
- addssu.sh
- + alltoall.sh
- + analyzesketchresults.sh
- bbmap.sh
- bbwrap.sh
- calcmem.sh
- callgenes.sh
- comparesketch.sh
- + comparessu.sh
- consensus.sh
- current/align2/AbstractMapper.java
- current/align2/BBMap.java
- current/align2/BBSplitter.java
- current/align2/BBWrap.java
- current/align2/RandomReads3.java
- current/pacbio/Aligner.java → current/aligner/Aligner.java
- current/prok/Alignment.java → current/aligner/Alignment.java
- current/pacbio/AlignmentResult.java → current/aligner/AlignmentResult.java
- + current/aligner/AllToAll.java
- current/pacbio/FlatAligner.java → current/aligner/FlatAligner.java
- current/pacbio/MultiStateAligner9PacBioAdapter.java → current/aligner/MultiStateAligner9PacBioAdapter.java
- current/pacbio/MultiStateAligner9PacBioAdapter2.java → current/aligner/MultiStateAligner9PacBioAdapter2.java
- current/pacbio/MultiStateAligner9PacBioAdapter3.java → current/aligner/MultiStateAligner9PacBioAdapter3.java
- current/pacbio/MultiStateAligner9PacBioAdapter_WithBarriers.java → current/aligner/MultiStateAligner9PacBioAdapter_WithBarriers.java
- current/pacbio/SingleStateAlignerFlat.java → current/aligner/SingleStateAlignerFlat.java
- current/pacbio/SingleStateAlignerFlat2.java → current/aligner/SingleStateAlignerFlat2.java
- current/pacbio/SingleStateAlignerFlat2Amino.java → current/aligner/SingleStateAlignerFlat2Amino.java
- current/pacbio/SingleStateAlignerFlat2_1D.java → current/aligner/SingleStateAlignerFlat2_1D.java
- + current/aligner/SingleStateAlignerFlat3.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/commit/7e91981b0ab5e8b846887672e866fca0617bbcaf

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View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/commit/7e91981b0ab5e8b846887672e866fca0617bbcaf
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