[med-svn] [Git][med-team/spades][master] 6 commits: routine-update: New upstream version

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / spades


Commits:
61c6b0d9 by Michael R. Crusoe at 2020-01-01T09:05:58Z
routine-update: New upstream version

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90191749 by Michael R. Crusoe at 2020-01-01T09:05:59Z
New upstream version 3.14.0+dfsg
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893f2f7f by Michael R. Crusoe at 2020-01-01T09:06:09Z
Update upstream source from tag 'upstream/3.14.0+dfsg'

Update to upstream version '3.14.0+dfsg'
with Debian dir a0729a045c9276f52e86e6bdc0a6746908a0e2bc
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f4d15999 by Michael R. Crusoe at 2020-01-01T11:42:12Z
freshen patches

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c8733e29 by Michael R. Crusoe at 2020-01-01T11:42:13Z
update copyright

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6ad9ac9c by Michael R. Crusoe at 2020-01-01T11:42:13Z
Added many missing papers

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30 changed files:

- + .github/workflows/basic.yml
- + .github/workflows/spades-test.yml
- README.md
- + assembler/.clang-format
- assembler/LICENSE
- assembler/VERSION
- + assembler/biosynthetic_spades_hmms/AMP.hmm.gz
- + assembler/biosynthetic_spades_hmms/AT.hmm.gz
- + assembler/biosynthetic_spades_hmms/CStart.hmm.gz
- + assembler/biosynthetic_spades_hmms/KR.hmm.gz
- + assembler/biosynthetic_spades_hmms/KS.hmm.gz
- + assembler/biosynthetic_spades_hmms/TE.hmm.gz
- assembler/changelog.html
- − assembler/configs/cap/gaf.info
- + assembler/configs/debruijn/bgc_mode.info
- assembler/configs/debruijn/config.info
- + assembler/configs/debruijn/isolate_mode.info
- assembler/configs/debruijn/log.properties
- assembler/configs/debruijn/meta_mode.info
- assembler/configs/debruijn/pe_params.info
- assembler/configs/debruijn/plasmid_mode.info
- assembler/configs/debruijn/rna_mode.info
- assembler/ext/include/btree/btree.h
- assembler/ext/include/edlib/edlib.h
- assembler/ext/include/folly/SmallLocks.h
- assembler/ext/include/gfa1/gfa.h
- − assembler/ext/include/jemalloc/internal/arena.h
- − assembler/ext/include/jemalloc/internal/atomic.h
- − assembler/ext/include/jemalloc/internal/base.h
- − assembler/ext/include/jemalloc/internal/bitmap.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/spades/compare/9b2cb3cacf94f694b1a3220b68a38c94ef168ba8...6ad9ac9c10220cc0071d27411b985f9db69a53be

-- 
View it on GitLab: https://salsa.debian.org/med-team/spades/compare/9b2cb3cacf94f694b1a3220b68a38c94ef168ba8...6ad9ac9c10220cc0071d27411b985f9db69a53be
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