[med-svn] [Git][med-team/vmatch][upstream] New upstream version 2.3.0+git20200101.0.b1bd228+dfsg

[Sascha Steinbiss]

Sascha Steinbiss pushed to branch upstream at Debian Med / vmatch


Commits:
d04bf7e9 by Sascha Steinbiss at 2020-01-03T10:11:29+01:00
New upstream version 2.3.0+git20200101.0.b1bd228+dfsg
- - - - -


6 changed files:

- src/Mkvtree/remainsort.c
- src/Vmatch/allmclust.c
- src/Vmatch/chncallparse.c
- src/kurtz-basic/multiseq-adv.c
- src/kurtz-basic/procopt.c
- src/kurtz/programversion.c


Changes:

=====================================
src/Mkvtree/remainsort.c
=====================================
@@ -195,7 +195,7 @@ void addunsortedrange(Rmnsufinfo *rmnsufinfo,
 {
   if(left == right)
   {
-    printf("allready sorted(%lu,%lu,%lu)\n",
+    printf("already sorted(%lu,%lu,%lu)\n",
             (Showuint) depth,(Showuint) (left-rmnsufinfo->sortedsuffixes),
                   (Showuint) (right-rmnsufinfo->sortedsuffixes));
     rmnsufinfo->countovermaxdepthsingle++;


=====================================
src/Vmatch/allmclust.c
=====================================
@@ -56,7 +56,7 @@ Sint genericmatchclustering(Matchclustercallinfo *matchclustercallinfo,
         }
       } else
       {
-        ERROR0("unkown matchclustertype");
+        ERROR0("unknown matchclustertype");
         return (Sint) -3;
       }
     }


=====================================
src/Vmatch/chncallparse.c
=====================================
@@ -270,7 +270,7 @@ Sint parsechain2dim(BOOL fromvmatch,
                            "each followed by a number specifies the minimum\n"
                            "length and the maximum error rate of thread\n"
                            "1 refers to match instance in indexed sequence\n"
-                           "2 refers to matchin instance in query");
+                           "2 refers to matching instance in query");
   ADDOPTION(OPTSILENT,"-silent","do not output the chains\n"
                                 "and only report "
                                 "their lengths and scores");


=====================================
src/kurtz-basic/multiseq-adv.c
=====================================
@@ -1471,7 +1471,7 @@ void echothedescription(FILE *outfp,Showdescinfo *showdesc,Multiseq *multiseq,
 
   if(!showdesc->defined)
   {
-    fprintf(stderr,"programm error: format specification for "
+    fprintf(stderr,"programming error: format specification for "
                    "description is undefined\n");
     exit(EXIT_FAILURE);
   }
@@ -1879,7 +1879,7 @@ static Sint parsemultiseqprojectfilefromfileptr(Multiseq *multiseq,
   }
   if(fscanf(fp,"littleendian=%ld\n",&readint1) != 1)
   {
-    ERROR2("%s.%s contains illegal line defining the endianess",
+    ERROR2("%s.%s contains illegal line defining the endianness",
                indexname,PROJECTFILESUFFIX);
     return (Sint) -8;
   }


=====================================
src/kurtz-basic/procopt.c
=====================================
@@ -499,7 +499,7 @@ Sint checkdoubleexclude(Uint numofopts,
       DEBUG2(2,"Exclude %s %s\n",opt[indi].optname,opt[indj].optname);
       if(excludepairs[indi*numofopts+indj])
       {
-        ERROR2("option %s and option %s already specfied as excluded",
+        ERROR2("option %s and option %s already specified as excluded",
                opt[indi].optname,opt[indj].optname);
         return (Sint) -1;
       }


=====================================
src/kurtz/programversion.c
=====================================
@@ -11,15 +11,12 @@ static void showgenericprogramversion(FILE *fp,
                                       char *cflags)
 {
   fprintf(fp, "%s (Vmatch) %s (%s)\n", program, version, compiledate);
-  fprintf(fp, "All rights reserved. Do not distribute.\n\n");
   fprintf(fp, "libvmatch:\n");
   fprintf(fp, "Copyright (c) 2000-2016 LScSA-Software GmbH\n\n");
 #ifndef NOLICENSEMANAGER
   fprintf(fp, "libzlm:\n");
   fprintf(fp, "Copyright (c) 2013-2016 Wikena GmbH\n\n");
 #endif
-  fprintf(fp, "LScSA-Software GmbH is the exclusive worldwide distributor of "
-              "Vmatch.\n");
   fprintf(fp, "Email: kurtz at zbh.uni-hamburg.de\n\n");
   fprintf(fp, "Compile flags: %s\n\n", cflags);
   fprintf(fp, "Vmatch is provided on an AS IS basis. The developers do not "



View it on GitLab: https://salsa.debian.org/med-team/vmatch/commit/d04bf7e94f0b62cfcc405c542285bdd2dc9fd6a5

-- 
View it on GitLab: https://salsa.debian.org/med-team/vmatch/commit/d04bf7e94f0b62cfcc405c542285bdd2dc9fd6a5
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