[med-svn] [Git][med-team/hisat2][master] temporarily skip the new python3-hisat2 package

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / hisat2


Commits:
1f860bf6 by Michael R. Crusoe at 2020-01-04T13:09:49+01:00
temporarily skip the new python3-hisat2 package

- - - - -


2 changed files:

- debian/changelog
- debian/control


Changes:

=====================================
debian/changelog
=====================================
@@ -1,8 +1,4 @@
-hisat2 (2.1.0-3) unstable; urgency=medium
-
-  [ Steffen Moeller ]
-  * Separated series of .py scripts and modules into separate
-    python3-hisat2 package.
+hisat2 (2.1.0-2nopython3hisat2) unstable; urgency=medium
 
   [ Saira Hussain ]
   * Add autopkgtest
@@ -12,6 +8,8 @@ hisat2 (2.1.0-3) unstable; urgency=medium
   * Recommends: bcftools, samtools
 
   [ Michael R. Crusoe ]
+  * Skip the new python3-hisat2 package while we wait for 2.1.0-3 to go
+    through the NEW queue.
   * Include SIMD everywhere headers and enable building on all architectures.
   * debhelper-compat 12
   * Remove trailing whitespace in debian/control


=====================================
debian/control
=====================================
@@ -34,25 +34,25 @@ Description: graph-based alignment of short nucleotide reads to many genomes
  accurate alignment of sequencing reads. This new indexing scheme is called a
  Hierarchical Graph FM index (HGFM).
 
-Package: python3-hisat2
-Section: python
-Architecture: all
-Depends: ${misc:Depends},
-         hisat2,
-         python3
-Description: Python scripts accompanying hisat2
- HISAT2 is a fast and sensitive alignment program for mapping next-
- generation sequencing reads (both DNA and RNA) to a population of human
- genomes (as well as against a single reference genome). Based on an
- extension of BWT for graphs a graph FM index (GFM) was designed and
- implementd. In addition to using one global GFM index that represents a
- population of human genomes, HISAT2 uses a large set of small GFM
- indexes that collectively cover the whole genome (each index
- representing a genomic region of 56 Kbp, with 55,000 indexes needed to
- cover the human population). These small indexes (called local indexes),
- combined with several alignment strategies, enable rapid and accurate
- alignment of sequencing reads. This new indexing scheme is called a
- Hierarchical Graph FM index (HGFM).
- .
- This package provides a serires of platform-independent scripts that are
- typically expected to be co-installed with the hisat2 binary.
+# Package: python3-hisat2
+# Section: python
+# Architecture: all
+# Depends: ${misc:Depends},
+#          hisat2,
+#          python3
+# Description: Python scripts accompanying hisat2
+#  HISAT2 is a fast and sensitive alignment program for mapping next-
+#  generation sequencing reads (both DNA and RNA) to a population of human
+#  genomes (as well as against a single reference genome). Based on an
+#  extension of BWT for graphs a graph FM index (GFM) was designed and
+#  implementd. In addition to using one global GFM index that represents a
+#  population of human genomes, HISAT2 uses a large set of small GFM
+#  indexes that collectively cover the whole genome (each index
+#  representing a genomic region of 56 Kbp, with 55,000 indexes needed to
+#  cover the human population). These small indexes (called local indexes),
+#  combined with several alignment strategies, enable rapid and accurate
+#  alignment of sequencing reads. This new indexing scheme is called a
+#  Hierarchical Graph FM index (HGFM).
+#  .
+#  This package provides a serires of platform-independent scripts that are
+#  typically expected to be co-installed with the hisat2 binary.



View it on GitLab: https://salsa.debian.org/med-team/hisat2/commit/1f860bf6637d3048b14e6e92be21962320106c38

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View it on GitLab: https://salsa.debian.org/med-team/hisat2/commit/1f860bf6637d3048b14e6e92be21962320106c38
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