[med-svn] [Git][med-team/bioperl-run][master] 7 commits: Build-Depends / Recommends: s/blast2/ncbi-blast+-legacy/

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / bioperl-run


Commits:
335032ed by Andreas Tille at 2020-01-04T17:48:52+01:00
Build-Depends / Recommends: s/blast2/ncbi-blast+-legacy/

- - - - -
9d6a84b6 by Andreas Tille at 2020-01-04T17:49:16+01:00
routine-update: debhelper-compat 12

- - - - -
63d2a5be by Andreas Tille at 2020-01-04T17:49:23+01:00
routine-update: Standards-Version: 4.4.1

- - - - -
753e0c32 by Andreas Tille at 2020-01-04T17:49:24+01:00
R-U: Trailing whitespace in debian/changelog

- - - - -
851be9b1 by Andreas Tille at 2020-01-04T17:49:24+01:00
R-U: Trailing whitespace in debian/copyright

- - - - -
413ed2e5 by Andreas Tille at 2020-01-04T17:49:31+01:00
Set upstream metadata fields: Bug-Database.

Fixes lintian: upstream-metadata-file-is-missing
See https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html for more details.

- - - - -
5d870191 by Andreas Tille at 2020-01-05T09:01:42+01:00
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- + debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,8 +1,15 @@
-bioperl-run (1.7.3-2) UNRELEASED; urgency=medium
+bioperl-run (1.7.3-2) unstable; urgency=medium
 
   * Depends: libbio-tools-run-alignment-clustalw
+  * Build-Depends / Recommends: s/blast2/ncbi-blast+-legacy/
+    Closes: #948082
+  * debhelper-compat 12
+  * Standards-Version: 4.4.1
+  * Remove trailing whitespace in debian/changelog
+  * Remove trailing whitespace in debian/copyright
+  * Set upstream metadata fields: Bug-Database.
 
- -- Andreas Tille <tille at debian.org>  Tue, 12 Feb 2019 14:25:03 +0100
+ -- Andreas Tille <tille at debian.org>  Sat, 04 Jan 2020 17:49:32 +0100
 
 bioperl-run (1.7.3-1) unstable; urgency=medium
 
@@ -122,7 +129,7 @@ bioperl-run (1.6.9-2) unstable; urgency=low
 
 bioperl-run (1.6.9-1) unstable; urgency=low
 
-  * New upstream release. 
+  * New upstream release.
   * Converted and validated debian/copyright to latest machine-readable format.
   * debian/control:
     - Refreshed the list of packages for which wrappers are provided, in the
@@ -170,7 +177,7 @@ bioperl-run (1.6.1-1) unstable; urgency=low
     - Build-depends on, and Recommdnes libalgorithm-diff-perl, libipc-run-perl,
       libio-string-perl and libxml-twig-perl, that are listed in DEPENDANCIES.
     - Build-depends on libarray-compare-perl and libtree-dagnode-perl
-      (otherwise tests fail). 
+      (otherwise tests fail).
     - Depend on amap-align instead of amap (Closes: #541274).
 
  -- Charles Plessy <plessy at debian.org>  Thu, 03 Sep 2009 11:00:03 +0900


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-12


=====================================
debian/control
=====================================
@@ -5,7 +5,7 @@ Uploaders: Charles Plessy <plessy at debian.org>,
 Section: science
 Testsuite: autopkgtest-pkg-perl
 Priority: optional
-Build-Depends: debhelper (>= 12~)
+Build-Depends: debhelper-compat (= 12)
 Build-Depends-Indep: perl,
                      libmodule-build-perl,
                      bioperl (>= 1.7.4),
@@ -22,7 +22,7 @@ Build-Depends-Indep: perl,
 # Needed for the regression tests: all Recommends of bioperl-run except embassy, that needs interactive setup.
                      amap-align,
                      bedtools,
-                     blast2,
+                     ncbi-blast+-legacy,
                      clustalw,
                      emboss,
                      exonerate,
@@ -44,7 +44,7 @@ Build-Depends-Indep: perl,
                      wise,
 # Needed for the network tests:
                      libwww-perl
-Standards-Version: 4.3.0
+Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/bioperl-run
 Vcs-Git: https://salsa.debian.org/med-team/bioperl-run.git
 Homepage: https://metacpan.org/release/BioPerl-Run
@@ -58,7 +58,7 @@ Depends: ${misc:Depends},
          libbio-tools-run-alignment-clustalw
 Recommends: amap-align,
             bedtools,
-            blast2,
+            ncbi-blast+-legacy,
             bowtie,
             bwa,
             clustalw,


=====================================
debian/copyright
=====================================
@@ -26,13 +26,13 @@ Copyright: © 1997–2016 Bioperl Team <bioperl-l at bioperl.org>
  Albert Vilella <avilella at gmail.com>
  Tiequan Zhang <tqzhang1973 at yahoo.com>
  Juguang Xiao <juguang at tll.org.sg>
-Comment:	
+Comment:
  Everyone can use it! We don't care if you are academic, corporate, or
  government. BioPerl is licensed under the same terms as Perl itself, which
  means it is dually-licensed under either the Artistic or GPL licenses. The Perl
  Artistic License, or the GNU GPL covers all the legalese and what you can and
  can't do with the source code.
- . 
+ .
  We do appreciate:
  .
   * You letting us know you sell or use a product that uses BioPerl. This helps
@@ -51,7 +51,7 @@ Comment:
  .
   * If you are an academic and you use the software, please cite the article.
     See the BioPerl publications for a list of papers which describe components in
-    the toolkit. 
+    the toolkit.
  .
  See http://www.bioperl.org/wiki/Licensing_BioPerl
 License: Perl


=====================================
debian/upstream/metadata
=====================================
@@ -0,0 +1 @@
+Bug-Database: https://github.com/bioperl/bioperl-run/issues



View it on GitLab: https://salsa.debian.org/med-team/bioperl-run/compare/1ad9e3d76e276edb3f4460fa86aefb60078a99d4...5d8701911acab44e3e3acb94db2b631b93b625fc

-- 
View it on GitLab: https://salsa.debian.org/med-team/bioperl-run/compare/1ad9e3d76e276edb3f4460fa86aefb60078a99d4...5d8701911acab44e3e3acb94db2b631b93b625fc
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