[med-svn] [Git][med-team/fasta3][master] Preparing for upload

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / fasta3


Commits:
d61cb91b by Steffen Moeller at 2020-01-06T12:22:17+01:00
Preparing for upload

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/patches/Makefile.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,13 +1,20 @@
-fasta3 (36.3.8h-1) UNRELEASED; urgency=medium
+fasta3 (36.3.8h-1) unstable; urgency=medium
 
+  [ Andreas Tille ]
   * Team upload.
   * New upstream version
   * debhelper-compat 12
   * Standards-Version: 4.4.0
-  TODO: Do we really need to use non-free smith waterman code?
-        There is a free libssw.  Please contact upstream!
 
- -- Andreas Tille <tille at debian.org>  Mon, 19 Aug 2019 21:45:02 +0200
+    TODO: Do we really need to use non-free smith waterman code?
+          There is a free libssw.  Please contact upstream!
+
+  [ Steffen Moeller]
+  * Standards-Version: 4.4.1
+  * Fixed patches - somehow one Makefile.common was removed but needed
+    that led to a FTBFS.
+
+ -- Steffen Moeller <moeller at debian.org>  Mon, 06 Jan 2020 12:20:34 +0100
 
 fasta3 (36.3.8g-1) unstable; urgency=low
 


=====================================
debian/control
=====================================
@@ -6,7 +6,7 @@ XS-Autobuild: no
 Priority: optional
 Build-Depends: debhelper-compat (= 12),
                zlib1g-dev
-Standards-Version: 4.4.0
+Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/fasta3
 Vcs-Git: https://salsa.debian.org/med-team/fasta3.git
 Homepage: http://fasta.bioch.virginia.edu


=====================================
debian/patches/Makefile.patch
=====================================
@@ -29,58 +29,3 @@ Description: Makefile
 +CFLAGS += -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit  -DM10_CONS  -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP  -D_LARGEFILE64_SOURCE  -DBIG_LIB64
  # -I/usr/include/mysql -DMYSQL_DB
  # -DSUPERFAMNUM -DSFCHAR="'|'" 
- 
---- a/make/Makefile36m.common
-+++ /dev/null
-@@ -1,51 +0,0 @@
--#
--# $Name:  $ - $Id: Makefile36m.common 1250 2014-01-24 21:33:39Z wrp $
--#
--# commands common to all architectures
--# if your architecture does not support "include", append at the end.
--#
--
--COMP_LIBO=comp_mlib9.o	# reads database into memory for multi-query without delay
--COMP_THRO=comp_mthr9.o	# threaded version
--
--WORK_THRO=work_thr2.o
--GETSEQO = 
--
--# standard nxgetaa, no memory mapping for 0 - 6
--#LGETLIB=getseq.o lgetlib.o
--#NGETLIB=nmgetlib
--
--# memory mapping for 0FASTA, 5PIRVMS, 6GCGBIN
--LGETLIB= $(GETSEQO) lgetlib.o lgetaa_m.o
--NGETLIB=nmgetlib
--
--# use ncbl_lib.c for BLAST1.4 support instead of ncbl2_mlib.c
--#NCBL_LIB=ncbl_lib.o
--
--# this option should support both formats (BLAST1.4 not currently supported): 
--#NCBL_LIB=ncbl_lib.o ncbl2_mlib.o
--
--# normally use ncbl2_mlib.c
--#NCBL_LIB=ncbl2_mlib.o
--#LIB_M= -lm
--
--# this option supports NCBI BLAST2 and mySQL
--# it requires  "-I/usr/include/mysql -DMYSQL_DB" in CFLAGS
--# and "-L/usr/lib64/mysql -lmysqlclient -lz" in LIB_M
--# some systems may also require a LD_LIBRARY_PATH change
--
--LIB_M= -lm 
--#LIB_M= -L/usr/lib64/mysql -lmysqlclient -lm # -lz 
--NCBL_LIB=ncbl2_mlib.o
--#NCBL_LIB=ncbl2_mlib.o mysql_lib.o
--
--# threaded as _t, serial
--# include ../make/Makefile.pcom
--
--# threaded without _t
--include ../make/Makefile.pcom_t
--
--# serial only 
--# include ../make/Makefile.pcom_s
--
--include ../make/Makefile.fcom



View it on GitLab: https://salsa.debian.org/med-team/fasta3/commit/d61cb91bbfbcdbe918b8720a22af87b34550aef8

-- 
View it on GitLab: https://salsa.debian.org/med-team/fasta3/commit/d61cb91bbfbcdbe918b8720a22af87b34550aef8
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