[med-svn] [Git][med-team/libfastahack][master] 4 commits: Generate a manual page with help2man

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / libfastahack


Commits:
8cdcd4da by Michael R. Crusoe at 2020-01-08T10:54:52+01:00
Generate a manual page with help2man

- - - - -
4fa93f5e by Michael R. Crusoe at 2020-01-08T10:54:53+01:00
Run some basic tests

- - - - -
0b6c6e39 by Michael R. Crusoe at 2020-01-08T10:54:53+01:00
Use those tests as an autopkgtest

- - - - -
acd41d84 by Michael R. Crusoe at 2020-01-08T10:57:23+01:00
1.0.0+dfsg-4

- - - - -


5 changed files:

- debian/changelog
- debian/control
- debian/manpages → debian/fastahack.manpages
- debian/rules
- + debian/tests/control


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+libfastahack (1.0.0+dfsg-4) unstable; urgency=medium
+
+  * Team upload.
+  * Generate a manual page with help2man
+  * Run some basic tests
+  * Use those tests as an autopkgtest
+
+ -- Michael R. Crusoe <michael.crusoe at gmail.com>  Wed, 08 Jan 2020 10:55:37 +0100
+
 libfastahack (1.0.0+dfsg-3) unstable; urgency=medium
 
   [ Steve Langasek ]


=====================================
debian/control
=====================================
@@ -5,7 +5,8 @@ Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 12),
                d-shlibs,
-               libdisorder-dev
+               libdisorder-dev,
+               help2man
 Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/libfastahack
 Vcs-Git: https://salsa.debian.org/med-team/libfastahack.git
@@ -40,7 +41,6 @@ Package: libfastahack-dev
 Architecture: any
 Section: libdevel
 Depends: libfastahack0 (= ${binary:Version}),
-         ${shlibs:Depends},
          ${misc:Depends}
 Description: library for indexing and sequence extraction from FASTA files (devel)
  fastahack is a small application for indexing and extracting sequences and


=====================================
debian/manpages → debian/fastahack.manpages
=====================================


=====================================
debian/rules
=====================================
@@ -3,10 +3,27 @@
 # DH_VERBOSE := 1
 
 export DEB_BUILD_MAINT_OPTIONS=hardening=+all
+include /usr/share/dpkg/default.mk
 
 %:
 	dh $@
 
+override_dh_installman:
+	help2man --no-discard-stderr --no-info --version-string=$(DEB_VERSION) \
+		--name="fastahack - indexing and extracting sequences and subsequences from FASTA files" \
+		./fastahack > debian/fastahack.1
+	dh_installman
+
+override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+	./fastahack tests/correct.fasta 2>&1 | grep -v ERROR
+	./fastahack tests/crlf.fasta 2>&1 | grep -v ERROR
+	./fastahack tests/embedded_newline.fasta 2>&1 | grep 'ERROR: embedded newline'
+	./fastahack tests/mismatched_lines.fasta 2>&1 | grep 'ERROR: mismatched line lengths'
+	./fastahack tests/trailing_newlines.fasta 2>&1 | grep -v ERROR
+	rm tests/*.fai
+endif
+
 override_dh_install:
 	dh_install
 	d-shlibmove --commit \


=====================================
debian/tests/control
=====================================
@@ -0,0 +1,3 @@
+Test-Command: /usr/bin/fastahack tests/correct.fasta 2>&1 | grep -v ERROR && /usr/bin/fastahack tests/crlf.fasta 2>&1 | grep -v ERROR && /usr/bin/fastahack tests/embedded_newline.fasta 2>&1 | grep 'ERROR: embedded newline' && /usr/bin/fastahack tests/mismatched_lines.fasta 2>&1 | grep 'ERROR: mismatched line lengths' && /usr/bin/fastahack tests/trailing_newlines.fasta 2>&1 | grep -v ERROR
+Depends: fastahack
+Restrictions: allow-stderr



View it on GitLab: https://salsa.debian.org/med-team/libfastahack/compare/1a301ead5d82c007174501c7f4dfb99f93f91039...acd41d841052e5c9d44116e98cb00bfe3e2d517b

-- 
View it on GitLab: https://salsa.debian.org/med-team/libfastahack/compare/1a301ead5d82c007174501c7f4dfb99f93f91039...acd41d841052e5c9d44116e98cb00bfe3e2d517b
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