[med-svn] [Git][med-team/clustalo][master] 9 commits: Do not replace autogenerated jquery.js

Fri Jan 10 10:52:59 GMT 2020


Andreas Tille pushed to branch master at Debian Med / clustalo


Commits:
9f4ac097 by Andreas Tille at 2020-01-10T11:42:52+01:00
Do not replace autogenerated jquery.js

- - - - -
b911c445 by Andreas Tille at 2020-01-10T11:43:17+01:00
routine-update: debhelper-compat 12

- - - - -
e8fc7fe8 by Andreas Tille at 2020-01-10T11:43:24+01:00
routine-update: Standards-Version: 4.4.1

- - - - -
31dc2e2b by Andreas Tille at 2020-01-10T11:43:57+01:00
R-U: DEB_BUILD_OPTIONS allow override_dh_auto_test

- - - - -
2e1bae3a by Andreas Tille at 2020-01-10T11:43:57+01:00
R-U: Trailing whitespace in debian/changelog

- - - - -
8497bbed by Andreas Tille at 2020-01-10T11:44:00+01:00
Set field Upstream-Contact in debian/copyright.
- - - - -
0c8dbc59 by Andreas Tille at 2020-01-10T11:44:03+01:00
Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright).
- - - - -
c62dedee by Andreas Tille at 2020-01-10T11:44:41+01:00
Fix typo

- - - - -
d3edeb9c by Andreas Tille at 2020-01-10T11:48:00+01:00
Upload to unstable

- - - - -


7 changed files:

- debian/changelog
- − debian/compat
- debian/control
- debian/copyright
- − debian/libclustalo-doc.linktrees
- debian/rules
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -1,8 +1,20 @@
-clustalo (1.2.4-3) UNRELEASED; urgency=medium
+clustalo (1.2.4-4) unstable; urgency=medium
 
+  [ Jelmer Vernooĳ ]
   * Use secure copyright file specification URI.
 
- -- Jelmer Vernooĳ <jelmer at debian.org>  Sat, 20 Oct 2018 13:51:21 +0000
+  [ Andreas Tille ]
+  * Do not replace autogenerated jquery.js
+    Closes: #946297
+  * debhelper-compat 12
+  * Standards-Version: 4.4.1
+  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
+  * Remove trailing whitespace in debian/changelog
+  * Set field Upstream-Contact in debian/copyright.
+  * Remove obsolete fields Contact, Name from debian/upstream/metadata
+    (already present in machine-readable debian/copyright).
+
+ -- Andreas Tille <tille at debian.org>  Fri, 10 Jan 2020 11:44:03 +0100
 
 clustalo (1.2.4-2) unstable; urgency=medium
 


=====================================
debian/compat deleted
=====================================
@@ -1 +0,0 @@
-11


=====================================
debian/control
=====================================
@@ -4,13 +4,12 @@ Uploaders: Olivier Sallou <osallou at debian.org>,
            Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 11~),
-               dh-linktree,
+Build-Depends: debhelper-compat (= 12),
                libargtable2-dev,
                doxygen,
                graphviz,
                sphinx-common
-Standards-Version: 4.1.5
+Standards-Version: 4.4.1
 Vcs-Browser: https://salsa.debian.org/med-team/clustalo
 Vcs-Git: https://salsa.debian.org/med-team/clustalo.git
 Homepage: http://www.clustal.org/omega/


=====================================
debian/copyright
=====================================
@@ -1,6 +1,7 @@
 Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: clustalo
 Source: http://www.clustal.org/omega/
+Upstream-Contact: Fabian Sievers (UCD Dublin, Ireland)
 
 Files: *
 Copyright: 2010 UCD Dublin <clustalw at ucd.ie>


=====================================
debian/libclustalo-doc.linktrees deleted
=====================================
@@ -1 +0,0 @@
-replace usr/share/sphinx/themes/basic/static/jquery.js usr/share/doc/libclustalo-doc/api/html/jquery.js 


=====================================
debian/rules
=====================================
@@ -7,13 +7,15 @@
 export DEB_BUILD_MAINT_OPTIONS = hardening=+all
 
 %:
-	dh $@ --with linktree
+	dh $@
 
 override_dh_auto_build-indep:
 	# nothing to do here
 
 override_dh_auto_test-indep:
-	# nothing to do here
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+	echo "Do not run build time test"
+endif
 
 override_dh_auto_install-arch:
 	dh_auto_install -a


=====================================
debian/upstream/metadata
=====================================
@@ -1,27 +1,25 @@
-Contact: Fabian Sievers (UCD Dublin, Ireland)
-Name: Clustal Omega
 Reference:
- - Author: >
+- Author: >
     Fabian Sievers and Andreas Wilm and David Dineen and Toby J Gibson and
     Kevin Karplus and Weizhong Li and Rodrigo Lopez and Hamish McWilliam
     and Michael Remmert and Johannes Söding and Julie D Thompson and
     Desmond G Higgins
-   Title: >
+  Title: >
     Fast, scalable generation of high-quality protein multiple sequence
     alignments using Clustal Omega
-   Journal: Molecular Systems Biology
-   Volume: 7
-   Number: 539
-   Year: 2011
-   PMID: 21988835
-   DOI: 10.1038/msb.2011.75
-   URL: http://www.nature.com/msb/journal/v7/n1/full/msb201175.html
+  Journal: Molecular Systems Biology
+  Volume: 7
+  Number: 539
+  Year: 2011
+  PMID: 21988835
+  DOI: 10.1038/msb.2011.75
+  URL: http://www.nature.com/msb/journal/v7/n1/full/msb201175.html
 Registry:
- - Name: bio.tools
-   Entry: NA
- - Name: OMICtools
-   Entry: OMICS_00972
- - Name: SciCrunch
-   Entry: SCR_001591
- - Name: conda:bioconda
-   Entry: clustalo
+- Name: bio.tools
+  Entry: NA
+- Name: OMICtools
+  Entry: OMICS_00972
+- Name: SciCrunch
+  Entry: SCR_001591
+- Name: conda:bioconda
+  Entry: clustalo



View it on GitLab: https://salsa.debian.org/med-team/clustalo/compare/bf71a15574575309afebfe951c434735d869b209...d3edeb9c61dff63efd30be559f19d417275068fc

-- 
View it on GitLab: https://salsa.debian.org/med-team/clustalo/compare/bf71a15574575309afebfe951c434735d869b209...d3edeb9c61dff63efd30be559f19d417275068fc
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