[med-svn] [Git][med-team/libbio-db-seqfeature-perl][upstream] New upstream version 1.7.4
Michael R. Crusoe
gitlab at salsa.debian.org
Mon Jan 13 15:43:28 GMT 2020
Michael R. Crusoe pushed to branch upstream at Debian Med / libbio-db-seqfeature-perl
Commits:
e6fc3b12 by Michael R. Crusoe at 2020-01-13T13:17:09+01:00
New upstream version 1.7.4
- - - - -
25 changed files:
- Changes
- LICENSE
- META.json
- META.yml
- Makefile.PL
- dist.ini
- lib/Bio/DB/SeqFeature.pm
- lib/Bio/DB/SeqFeature/NormalizedFeature.pm
- lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm
- lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm
- lib/Bio/DB/SeqFeature/Segment.pm
- lib/Bio/DB/SeqFeature/Store.pm
- lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm
- lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm
- lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm
- lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm
- lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm
- lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm
- lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm
- lib/Bio/DB/SeqFeature/Store/Loader.pm
- lib/Bio/DB/SeqFeature/Store/bdb.pm
- lib/Bio/DB/SeqFeature/Store/berkeleydb.pm
- lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm
- lib/Bio/DB/SeqFeature/Store/memory.pm
- t/00-compile.t
Changes:
=====================================
Changes
=====================================
@@ -1,5 +1,11 @@
Summary of important user-visible changes for Bio-DB-SeqFeature
---------------------------------------------------------------
+1.7.4 2020-01-08 22:03:25-06:00 America/Chicago
+ * The prior release required both DBD::Pg and DBD::SQLite; we now
+ skip these.
+ * We now explicitly require Bio::DB::GFF::Typename; tests depend on
+ it and the dynamic loading used (which caused issue #1) now doesn't make sense.
+
1.7.3 2019-02-19 14:26:06-05:00 America/Detroit
* First release after split from bioperl-live.
=====================================
LICENSE
=====================================
@@ -1,4 +1,4 @@
-This software is copyright (c) 2019 by Cold Spring Harbor Laboratory, Nathan Weeks, Ontario Institute for Cancer Research.
+This software is copyright (c) 2020 by Cold Spring Harbor Laboratory, Nathan Weeks, Ontario Institute for Cancer Research.
This is free software; you can redistribute it and/or modify it under
the same terms as the Perl 5 programming language system itself.
@@ -12,7 +12,7 @@ b) the "Artistic License"
--- The GNU General Public License, Version 1, February 1989 ---
-This software is Copyright (c) 2019 by Cold Spring Harbor Laboratory, Nathan Weeks, Ontario Institute for Cancer Research.
+This software is Copyright (c) 2020 by Cold Spring Harbor Laboratory, Nathan Weeks, Ontario Institute for Cancer Research.
This is free software, licensed under:
@@ -272,7 +272,7 @@ That's all there is to it!
--- The Artistic License 1.0 ---
-This software is Copyright (c) 2019 by Cold Spring Harbor Laboratory, Nathan Weeks, Ontario Institute for Cancer Research.
+This software is Copyright (c) 2020 by Cold Spring Harbor Laboratory, Nathan Weeks, Ontario Institute for Cancer Research.
This is free software, licensed under:
=====================================
META.json
=====================================
@@ -5,7 +5,7 @@
"Nathan Weeks <Nathan.Weeks at ars.usda.gov>"
],
"dynamic_config" : 0,
- "generated_by" : "Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.150005",
+ "generated_by" : "Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.150010",
"license" : [
"perl_5"
],
@@ -29,6 +29,7 @@
"runtime" : {
"requires" : {
"Bio::DB::Fasta" : "0",
+ "Bio::DB::GFF::Typename" : "0",
"Bio::DB::GFF::Util::Rearrange" : "0",
"Bio::Location::Simple" : "0",
"Bio::PrimarySeq" : "0",
@@ -39,8 +40,6 @@
"Bio::SeqFeature::Lite" : "0",
"Carp" : "0",
"Cwd" : "0",
- "DBD::Pg" : "0",
- "DBD::SQLite" : "0",
"DBI" : "0",
"DB_File" : "0",
"Fcntl" : "0",
@@ -90,10 +89,10 @@
"web" : "https://github.com/bioperl/bio-db-seqfeature"
}
},
- "version" : "1.7.3",
+ "version" : "1.7.4",
"x_Dist_Zilla" : {
"perl" : {
- "version" : "5.022001"
+ "version" : "5.028001"
},
"plugins" : [
{
@@ -201,7 +200,7 @@
"class" : "Dist::Zilla::Plugin::Test::Compile",
"config" : {
"Dist::Zilla::Plugin::Test::Compile" : {
- "bail_out_on_fail" : "0",
+ "bail_out_on_fail" : 0,
"fail_on_warning" : "author",
"fake_home" : 0,
"filename" : "t/00-compile.t",
@@ -213,7 +212,10 @@
"script_finder" : [
":PerlExecFiles"
],
- "skips" : [],
+ "skips" : [
+ "Bio::DB::SeqFeature::Store::DBI::Pg",
+ "Bio::DB::SeqFeature::Store::DBI::SQLite"
+ ],
"switch" : []
}
},
@@ -265,7 +267,7 @@
"changelog" : "Changes"
},
"Dist::Zilla::Role::Git::Repo" : {
- "git_version" : "2.7.4",
+ "git_version" : "2.20.1",
"repo_root" : "."
}
},
@@ -288,7 +290,7 @@
"changelog" : "Changes"
},
"Dist::Zilla::Role::Git::Repo" : {
- "git_version" : "2.7.4",
+ "git_version" : "2.20.1",
"repo_root" : "."
},
"Dist::Zilla::Role::Git::StringFormatter" : {
@@ -305,12 +307,12 @@
"branch" : null,
"changelog" : "Changes",
"signed" : 0,
- "tag" : "Bio-DB-SeqFeature-v1.7.3",
+ "tag" : "Bio-DB-SeqFeature-v1.7.4",
"tag_format" : "%N-v%v",
"tag_message" : "%N-v%v"
},
"Dist::Zilla::Role::Git::Repo" : {
- "git_version" : "2.7.4",
+ "git_version" : "2.20.1",
"repo_root" : "."
},
"Dist::Zilla::Role::Git::StringFormatter" : {
@@ -374,12 +376,12 @@
"zilla" : {
"class" : "Dist::Zilla::Dist::Builder",
"config" : {
- "is_trial" : "0"
+ "is_trial" : 0
},
"version" : "6.012"
}
},
- "x_generated_by_perl" : "v5.22.1",
+ "x_generated_by_perl" : "v5.28.1",
"x_serialization_backend" : "Cpanel::JSON::XS version 4.09"
}
=====================================
META.yml
=====================================
@@ -14,7 +14,7 @@ build_requires:
configure_requires:
ExtUtils::MakeMaker: '0'
dynamic_config: 0
-generated_by: 'Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.150005'
+generated_by: 'Dist::Zilla version 6.012, CPAN::Meta::Converter version 2.150010'
license: perl
meta-spec:
url: http://module-build.sourceforge.net/META-spec-v1.4.html
@@ -22,6 +22,7 @@ meta-spec:
name: Bio-DB-SeqFeature
requires:
Bio::DB::Fasta: '0'
+ Bio::DB::GFF::Typename: '0'
Bio::DB::GFF::Util::Rearrange: '0'
Bio::Location::Simple: '0'
Bio::PrimarySeq: '0'
@@ -32,8 +33,6 @@ requires:
Bio::SeqFeature::Lite: '0'
Carp: '0'
Cwd: '0'
- DBD::Pg: '0'
- DBD::SQLite: '0'
DBI: '0'
DB_File: '0'
Fcntl: '0'
@@ -60,10 +59,10 @@ resources:
bugtracker: https://github.com/bioperl/bio-db-seqfeature/issues
homepage: https://metacpan.org/release/Bio-DB-SeqFeature
repository: git://github.com/bioperl/bio-db-seqfeature.git
-version: 1.7.3
+version: 1.7.4
x_Dist_Zilla:
perl:
- version: '5.022001'
+ version: '5.028001'
plugins:
-
class: Dist::Zilla::Plugin::GatherDir
@@ -159,7 +158,9 @@ x_Dist_Zilla:
phase: test
script_finder:
- ':PerlExecFiles'
- skips: []
+ skips:
+ - Bio::DB::SeqFeature::Store::DBI::Pg
+ - Bio::DB::SeqFeature::Store::DBI::SQLite
switch: []
name: '@BioPerl/Test::Compile'
version: '2.058'
@@ -199,7 +200,7 @@ x_Dist_Zilla:
allow_dirty_match: []
changelog: Changes
Dist::Zilla::Role::Git::Repo:
- git_version: 2.7.4
+ git_version: 2.20.1
repo_root: .
name: '@BioPerl/Git::Check'
version: '2.045'
@@ -216,7 +217,7 @@ x_Dist_Zilla:
allow_dirty_match: []
changelog: Changes
Dist::Zilla::Role::Git::Repo:
- git_version: 2.7.4
+ git_version: 2.20.1
repo_root: .
Dist::Zilla::Role::Git::StringFormatter:
time_zone: local
@@ -229,11 +230,11 @@ x_Dist_Zilla:
branch: ~
changelog: Changes
signed: 0
- tag: Bio-DB-SeqFeature-v1.7.3
+ tag: Bio-DB-SeqFeature-v1.7.4
tag_format: '%N-v%v'
tag_message: '%N-v%v'
Dist::Zilla::Role::Git::Repo:
- git_version: 2.7.4
+ git_version: 2.20.1
repo_root: .
Dist::Zilla::Role::Git::StringFormatter:
time_zone: local
@@ -284,5 +285,5 @@ x_Dist_Zilla:
config:
is_trial: '0'
version: '6.012'
-x_generated_by_perl: v5.22.1
-x_serialization_backend: 'YAML::Tiny version 1.69'
+x_generated_by_perl: v5.28.1
+x_serialization_backend: 'YAML::Tiny version 1.73'
=====================================
Makefile.PL
=====================================
@@ -23,6 +23,7 @@ my %WriteMakefileArgs = (
"NAME" => "Bio::DB::SeqFeature",
"PREREQ_PM" => {
"Bio::DB::Fasta" => 0,
+ "Bio::DB::GFF::Typename" => 0,
"Bio::DB::GFF::Util::Rearrange" => 0,
"Bio::Location::Simple" => 0,
"Bio::PrimarySeq" => 0,
@@ -33,8 +34,6 @@ my %WriteMakefileArgs = (
"Bio::SeqFeature::Lite" => 0,
"Carp" => 0,
"Cwd" => 0,
- "DBD::Pg" => 0,
- "DBD::SQLite" => 0,
"DBI" => 0,
"DB_File" => 0,
"Fcntl" => 0,
@@ -66,7 +65,7 @@ my %WriteMakefileArgs = (
"Test::More" => 0,
"lib" => 0
},
- "VERSION" => "1.7.3",
+ "VERSION" => "1.7.4",
"test" => {
"TESTS" => "t/*.t"
}
@@ -75,6 +74,7 @@ my %WriteMakefileArgs = (
my %FallbackPrereqs = (
"Bio::DB::Fasta" => 0,
+ "Bio::DB::GFF::Typename" => 0,
"Bio::DB::GFF::Util::Rearrange" => 0,
"Bio::Location::Simple" => 0,
"Bio::PrimarySeq" => 0,
@@ -86,8 +86,6 @@ my %FallbackPrereqs = (
"Bio::SeqFeature::Lite" => 0,
"Carp" => 0,
"Cwd" => 0,
- "DBD::Pg" => 0,
- "DBD::SQLite" => 0,
"DBI" => 0,
"DB_File" => 0,
"Fcntl" => 0,
=====================================
dist.ini
=====================================
@@ -1,13 +1,21 @@
name = Bio-DB-SeqFeature
-version = 1.7.3
+version = 1.7.4
author = Lincoln Stein <lstein at cshl.org>
author = Nathan Weeks <Nathan.Weeks at ars.usda.gov>
copyright_holder = Cold Spring Harbor Laboratory, Nathan Weeks, Ontario Institute for Cancer Research
license = Perl_5
;; Modules should be fixed so that these don't have to be removed.
+
[@BioPerl]
-remove = PodCoverageTests
-remove = PodWeaver
-remove = Test::EOL
-remove = Test::NoTabs
+
+;; Skip requiring DBD::Pg
+AutoPrereqs.skips[0] = ^DBD::\S+$
+
+;; skip compilation tests, which fail if DBD::* modules aren't installed
+Test::Compile.skip[0] = Bio::DB::SeqFeature::Store::DBI::Pg
+Test::Compile.skip[1] = Bio::DB::SeqFeature::Store::DBI::SQLite
=====================================
lib/Bio/DB/SeqFeature.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature;
-$Bio::DB::SeqFeature::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::VERSION = '1.7.4';
=head1 NAME
=====================================
lib/Bio/DB/SeqFeature/NormalizedFeature.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::NormalizedFeature;
-$Bio::DB::SeqFeature::NormalizedFeature::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::NormalizedFeature::VERSION = '1.7.4';
=head1 NAME
=====================================
lib/Bio/DB/SeqFeature/NormalizedFeatureI.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::NormalizedFeatureI;
-$Bio::DB::SeqFeature::NormalizedFeatureI::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::NormalizedFeatureI::VERSION = '1.7.4';
=head1 NAME
=====================================
lib/Bio/DB/SeqFeature/NormalizedTableFeatureI.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::NormalizedTableFeatureI;
-$Bio::DB::SeqFeature::NormalizedTableFeatureI::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::NormalizedTableFeatureI::VERSION = '1.7.4';
=head1 NAME
=====================================
lib/Bio/DB/SeqFeature/Segment.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::Segment;
-$Bio::DB::SeqFeature::Segment::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Segment::VERSION = '1.7.4';
=head1 NAME
=====================================
lib/Bio/DB/SeqFeature/Store.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::Store;
-$Bio::DB::SeqFeature::Store::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Store::VERSION = '1.7.4';
=head1 NAME
@@ -2711,7 +2711,7 @@ sub coverage_array {
package Bio::DB::SeqFeature::Store::FeatureIterator;
-$Bio::DB::SeqFeature::Store::FeatureIterator::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Store::FeatureIterator::VERSION = '1.7.4';
sub new {
my $self = shift;
my @features = @_;
=====================================
lib/Bio/DB/SeqFeature/Store/DBI/Iterator.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::Store::DBI::Iterator;
-$Bio::DB::SeqFeature::Store::DBI::Iterator::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Store::DBI::Iterator::VERSION = '1.7.4';
=head1 NAME
=====================================
lib/Bio/DB/SeqFeature/Store/DBI/Pg.pm
=====================================
@@ -1,10 +1,3 @@
-
-package Bio::DB::SeqFeature::Store::DBI::Pg;
-$Bio::DB::SeqFeature::Store::DBI::Pg::VERSION = '1.7.3';
-use DBD::Pg qw(:pg_types);
-use MIME::Base64;
-# $Id: Pg.pm 14656 2008-04-14 15:05:37Z lstein $
-
=head1 NAME
Bio::DB::SeqFeature::Store::DBI::Pg -- PostgreSQL implementation of Bio::DB::SeqFeature::Store
@@ -153,11 +146,15 @@ sections.
=cut
+package Bio::DB::SeqFeature::Store::DBI::Pg;
+$Bio::DB::SeqFeature::Store::DBI::Pg::VERSION = '1.7.4';
use strict;
-
use base 'Bio::DB::SeqFeature::Store::DBI::mysql';
+use MIME::Base64;
+
use Bio::DB::SeqFeature::Store::DBI::Iterator;
use DBI;
+use DBD::Pg qw(:pg_types);
use Memoize;
use Cwd 'abs_path';
use Bio::DB::GFF::Util::Rearrange 'rearrange';
=====================================
lib/Bio/DB/SeqFeature/Store/DBI/SQLite.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::Store::DBI::SQLite;
-$Bio::DB::SeqFeature::Store::DBI::SQLite::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Store::DBI::SQLite::VERSION = '1.7.4';
#$Id$
=head1 NAME
=====================================
lib/Bio/DB/SeqFeature/Store/DBI/mysql.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::Store::DBI::mysql;
-$Bio::DB::SeqFeature::Store::DBI::mysql::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Store::DBI::mysql::VERSION = '1.7.4';
=head1 NAME
Bio::DB::SeqFeature::Store::DBI::mysql -- Mysql implementation of Bio::DB::SeqFeature::Store
=====================================
lib/Bio/DB/SeqFeature/Store/FeatureFileLoader.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::Store::FeatureFileLoader;
-$Bio::DB::SeqFeature::Store::FeatureFileLoader::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Store::FeatureFileLoader::VERSION = '1.7.4';
=head1 NAME
=====================================
lib/Bio/DB/SeqFeature/Store/GFF2Loader.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::Store::GFF2Loader;
-$Bio::DB::SeqFeature::Store::GFF2Loader::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Store::GFF2Loader::VERSION = '1.7.4';
# $Id: GFF2Loader.pm 11755 2007-11-08 02:19:29Z cjfields $
=head1 NAME
=====================================
lib/Bio/DB/SeqFeature/Store/GFF3Loader.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::Store::GFF3Loader;
-$Bio::DB::SeqFeature::Store::GFF3Loader::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Store::GFF3Loader::VERSION = '1.7.4';
=head1 NAME
=====================================
lib/Bio/DB/SeqFeature/Store/Loader.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::Store::Loader;
-$Bio::DB::SeqFeature::Store::Loader::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Store::Loader::VERSION = '1.7.4';
=head1 NAME
=====================================
lib/Bio/DB/SeqFeature/Store/bdb.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::Store::bdb;
-$Bio::DB::SeqFeature::Store::bdb::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Store::bdb::VERSION = '1.7.4';
=head1 NAME
=====================================
lib/Bio/DB/SeqFeature/Store/berkeleydb.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::Store::berkeleydb;
-$Bio::DB::SeqFeature::Store::berkeleydb::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Store::berkeleydb::VERSION = '1.7.4';
use strict;
use base 'Bio::DB::SeqFeature::Store';
use Bio::DB::GFF::Util::Rearrange 'rearrange';
@@ -1510,7 +1510,7 @@ sub _featurecount {
package Bio::DB::SeqFeature::Store::berkeleydb::Iterator;
-$Bio::DB::SeqFeature::Store::berkeleydb::Iterator::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Store::berkeleydb::Iterator::VERSION = '1.7.4';
sub new {
my $class = shift;
my $store = shift;
@@ -1529,7 +1529,7 @@ sub next_seq {
package Bio::DB::Fasta::Subdir;
-$Bio::DB::Fasta::Subdir::VERSION = '1.7.3';
+$Bio::DB::Fasta::Subdir::VERSION = '1.7.4';
use base 'Bio::DB::Fasta';
# alter calling arguments so that the index file is placed in a subdirectory
=====================================
lib/Bio/DB/SeqFeature/Store/berkeleydb3.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::Store::berkeleydb3;
-$Bio::DB::SeqFeature::Store::berkeleydb3::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Store::berkeleydb3::VERSION = '1.7.4';
# $Id: berkeleydb3.pm 15987 2009-08-18 21:08:55Z lstein $
# faster implementation of berkeleydb
=====================================
lib/Bio/DB/SeqFeature/Store/memory.pm
=====================================
@@ -1,5 +1,5 @@
package Bio::DB::SeqFeature::Store::memory;
-$Bio::DB::SeqFeature::Store::memory::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Store::memory::VERSION = '1.7.4';
=head1 NAME
Bio::DB::SeqFeature::Store::memory -- In-memory implementation of Bio::DB::SeqFeature::Store
@@ -122,6 +122,7 @@ will be lost when the script exits.
use strict;
use base 'Bio::DB::SeqFeature::Store';
use Bio::DB::SeqFeature::Store::GFF3Loader;
+use Bio::DB::GFF::Typename;
use Bio::DB::GFF::Util::Rearrange 'rearrange';
use File::Temp 'tempdir';
use IO::File;
@@ -672,7 +673,6 @@ sub _search_attributes {
sub types {
my $self = shift;
- eval "require Bio::DB::GFF::Typename" unless Bio::DB::GFF::Typename->can('new');
my @types;
for my $primary_tag ( keys %{$$self{_index}{type}} ) {
for my $source_tag ( keys %{$$self{_index}{type}{$primary_tag}} ) {
@@ -750,7 +750,7 @@ sub _seq_ids {
}
package Bio::DB::SeqFeature::Store::memory::Iterator;
-$Bio::DB::SeqFeature::Store::memory::Iterator::VERSION = '1.7.3';
+$Bio::DB::SeqFeature::Store::memory::Iterator::VERSION = '1.7.4';
sub new {
my ($class, $store, $ids) = @_;
return bless {store => $store,
=====================================
t/00-compile.t
=====================================
@@ -6,7 +6,7 @@ use warnings;
use Test::More;
-plan tests => 22 + ($ENV{AUTHOR_TESTING} ? 1 : 0);
+plan tests => 20 + ($ENV{AUTHOR_TESTING} ? 1 : 0);
my @module_files = (
'Bio/DB/SeqFeature.pm',
@@ -16,8 +16,6 @@ my @module_files = (
'Bio/DB/SeqFeature/Segment.pm',
'Bio/DB/SeqFeature/Store.pm',
'Bio/DB/SeqFeature/Store/DBI/Iterator.pm',
- 'Bio/DB/SeqFeature/Store/DBI/Pg.pm',
- 'Bio/DB/SeqFeature/Store/DBI/SQLite.pm',
'Bio/DB/SeqFeature/Store/DBI/mysql.pm',
'Bio/DB/SeqFeature/Store/FeatureFileLoader.pm',
'Bio/DB/SeqFeature/Store/GFF2Loader.pm',
View it on GitLab: https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/commit/e6fc3b12c1e8d01a8656809737a11b562c539fa1
--
View it on GitLab: https://salsa.debian.org/med-team/libbio-db-seqfeature-perl/commit/e6fc3b12c1e8d01a8656809737a11b562c539fa1
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200113/a48a0b09/attachment-0001.html>
More information about the debian-med-commit
mailing list