[med-svn] [Git][med-team/marginphase][master] Add metadata and description

[Pranav Ballaney]

Pranav Ballaney pushed to branch master at Debian Med / marginphase


Commits:
a37c55dd by Pranav Ballaney at 2020-07-03T08:44:29+05:30
Add metadata and description

- - - - -


2 changed files:

- debian/control
- + debian/upstream/metadata


Changes:

=====================================
debian/control
=====================================
@@ -18,3 +18,14 @@ Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
 Description: simultaneous haplotyping and genotyping
  MarginPhase is a program for simultaneous haplotyping and genotyping.
+ It is an experimental, open source implementation written in C and
+ developed to work primarily with nanopore data. The MarginPhase workflow
+ includes an alignment summation step. This differentiates it from WhatsHap,
+ which performs a local realignment around analyzed sites. MarginPhase can
+ also phase genotypic variants simultaneously after filtering out the sites
+ that are likely homozygous. MarginPhase’s output includes a BAM which
+ encodes the phasing of each read, including which phase set it is in, 
+ which haplotype it belongs to, and what of the aligned portion falls 
+ into each phase set. Reads which span a phase set boundary have information 
+ for both encoded in them.
+


=====================================
debian/upstream/metadata
=====================================
@@ -0,0 +1,12 @@
+Reference:
+  Author: Jana Ebler and Marina Haukness and Trevor Pesout and Tobias Marschall and Benedict Paten 
+  Title: Haplotype-aware diplotyping from noisy long reads
+  Journal: Genome Biol
+  Year: 2019
+  Volume: 20
+  Number: 116
+  Pages: 
+  DOI: https://doi.org/10.1186/s13059-019-1709-0
+  PMID:
+  URL: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1709-0
+  eprint: 



View it on GitLab: https://salsa.debian.org/med-team/marginphase/-/commit/a37c55ddbccb8f65d665b02ddd3265c51daa03a1

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View it on GitLab: https://salsa.debian.org/med-team/marginphase/-/commit/a37c55ddbccb8f65d665b02ddd3265c51daa03a1
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