Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
6108573e by Andreas Tille at 2020-07-05T13:44:19+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,45 +1,45 @@
-Last-Update: Sun, 05 Jul 2020 01:42:04 +0000
+Last-Update: Sun, 05 Jul 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 182 | {covid-19,imaging} |
+ dcmtk | 188 | {covid-19,imaging} |
orthanc | 96 | {covid-19,imaging,practice} |
- gdcm | 46 | {imaging-dev} |
+ gdcm | 45 | {imaging-dev} |
orthanc-wsi | 45 | {his,practice,covid-19,laboratory,imaging,oncology} |
htsjdk | 33 | {bio-dev} |
- dcm2niix | 21 | {imaging} |
- dicomscope | 21 | {imaging} |
- dicom3tools | 20 | {imaging} |
+ dcm2niix | 22 | {imaging} |
+ dicom3tools | 22 | {imaging} |
+ dicomscope | 22 | {imaging} |
gnumed-server | 19 | {practice,covid-19} |
- ngs-sdk | 17 | {bio-dev} |
- gdcm | 16 | {covid-19,imaging} |
+ ngs-sdk | 18 | {bio-dev} |
+ gdcm | 17 | {covid-19,imaging} |
+ invesalius | 14 | {imaging} |
gdcm | 13 | {imaging-dev} |
- insighttoolkit4 | 12 | {imaging-dev} |
- invesalius | 12 | {imaging} |
- jebl2 | 11 | {bio-dev} |
- minc-tools | 11 | {imaging} |
- pixelmed | 10 | {imaging} |
- dicompyler | 9 | {oncology} |
+ insighttoolkit4 | 13 | {imaging-dev} |
+ jebl2 | 12 | {bio-dev} |
+ minc-tools | 12 | {imaging} |
+ pixelmed | 11 | {imaging} |
+ biosig4c++ | 9 | {physics,imaging} |
ngs-sdk | 9 | {bio-dev} |
- psychopy | 9 | {psychology} |
- biosig4c++ | 8 | {physics,imaging} |
+ openslide | 9 | {imaging} |
+ vtk-dicom | 9 | {imaging} |
+ dicompyler | 8 | {oncology} |
libdivsufsort | 8 | {bio-dev} |
- melting | 8 | {bio,cloud} |
- openslide | 8 | {imaging} |
orthanc-webviewer | 8 | {imaging} |
plastimatch | 8 | {imaging} |
- vtk-dicom | 8 | {imaging} |
+ psychopy | 8 | {psychology} |
adun.app | 7 | {bio} |
- king-probe | 7 | {bio} |
+ king | 7 | {imaging,typesetting} |
lagan | 7 | {bio} |
+ libminc | 7 | {imaging-dev} |
+ librg-utils-perl | 7 | {bio} |
+ melting | 7 | {bio,cloud} |
orthanc-dicomweb | 7 | {imaging,covid-19} |
pymia | 7 | {imaging-dev} |
stacks | 7 | {bio} |
treeview | 7 | {bio-phylogeny,bio} |
ea-utils | 6 | {bio} |
- king | 6 | {imaging,typesetting} |
- libminc | 6 | {imaging-dev} |
- librg-utils-perl | 6 | {bio} |
+ king-probe | 6 | {bio} |
obitools | 6 | {bio} |
orthanc-mysql | 6 | {imaging} |
paraclu | 6 | {cloud,bio} |
@@ -48,29 +48,29 @@ Last-Update: Sun, 05 Jul 2020 01:42:04 +0000
fastlink | 5 | {cloud,bio} |
getdata | 5 | {bio} |
mlv-smile | 5 | {bio,cloud} |
+ ncbi-seg | 5 | {bio} |
orthanc-postgresql | 5 | {imaging} |
- seqsero | 5 | {bio} |
sibsim4 | 5 | {bio,cloud} |
sigma-align | 5 | {bio-phylogeny,cloud,bio} |
staden | 5 | {bio} |
zalign | 5 | {cloud,bio} |
bart-view | 4 | {imaging} |
biomaj3-cli | 4 | {cloud} |
+ elastix | 4 | {imaging} |
gatb-core | 4 | {bio} |
microbegps | 4 | {bio} |
mipe | 4 | {cloud,bio} |
mrs | 4 | {bio} |
- ncbi-seg | 4 | {bio} |
neobio | 4 | {cloud,bio} |
phyutility | 4 | {bio,cloud} |
piler | 4 | {bio} |
+ predictprotein | 4 | {bio} |
qrisk2 | 4 | {practice} |
- salmon | 4 | {bio,covid-19} |
seqmagick | 4 | {covid-19,bio} |
+ seqsero | 4 | {bio} |
snap-aligner | 4 | {bio} |
spread-phy | 4 | {bio-phylogeny,bio} |
squizz | 4 | {bio,cloud} |
- tnseq-transit | 4 | {covid-19,bio} |
transtermhp | 4 | {bio} |
ampliconnoise | 3 | {cloud,bio} |
bandage | 3 | {bio} |
@@ -80,7 +80,6 @@ Last-Update: Sun, 05 Jul 2020 01:42:04 +0000
delly | 3 | {bio,covid-19} |
ecopcr | 3 | {bio} |
edtsurf | 3 | {bio} |
- elastix | 3 | {imaging} |
embassy-domainatrix | 3 | {cloud,bio} |
embassy-domalign | 3 | {cloud,bio} |
embassy-domsearch | 3 | {bio,cloud} |
@@ -94,18 +93,18 @@ Last-Update: Sun, 05 Jul 2020 01:42:04 +0000
multiqc | 3 | {bio,covid-19} |
perm | 3 | {cloud,bio} |
placnet | 3 | {bio} |
- predictprotein | 3 | {bio} |
proalign | 3 | {bio-phylogeny,bio} |
probabel | 3 | {cloud,bio} |
- rambo-k | 3 | {bio} |
rdp-alignment | 3 | {bio} |
rdp-classifier | 3 | {bio} |
rdp-readseq | 3 | {bio} |
relion | 3 | {bio} |
runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
+ salmon | 3 | {bio,covid-19} |
scythe | 3 | {bio} |
segemehl | 3 | {bio} |
+ tnseq-transit | 3 | {covid-19,bio} |
tracetuner | 3 | {bio} |
tvc | 3 | {bio} |
alter-sequence-alignment | 2 | {bio} |
@@ -117,6 +116,7 @@ Last-Update: Sun, 05 Jul 2020 01:42:04 +0000
bio-rainbow | 2 | {bio} |
bio-tradis | 2 | {bio-dev,bio} |
bitseq | 2 | {bio} |
+ blimps | 2 | {bio} |
canu | 2 | {bio} |
centrifuge | 2 | {bio,covid-19} |
clonalframeml | 2 | {bio,covid-19} |
@@ -152,6 +152,7 @@ Last-Update: Sun, 05 Jul 2020 01:42:04 +0000
qcumber | 2 | {bio} |
quorum | 2 | {bio} |
radiant | 2 | {bio} |
+ rambo-k | 2 | {bio} |
rampler | 2 | {bio} |
repeatmasker-recon | 2 | {bio} |
roguenarok | 2 | {bio} |
@@ -161,6 +162,7 @@ Last-Update: Sun, 05 Jul 2020 01:42:04 +0000
scrm | 2 | {bio} |
seqan | 2 | {bio-dev} |
sga | 2 | {bio} |
+ sift | 2 | {bio} |
soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
spaced | 2 | {bio} |
@@ -172,7 +174,6 @@ Last-Update: Sun, 05 Jul 2020 01:42:04 +0000
atropos | 1 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
blasr | 1 | {bio,bio-ngs} |
- blimps | 1 | {bio} |
cat-bat | 1 | {bio,covid-19} |
cufflinks | 1 | {cloud,bio} |
embassy-phylip | 1 | {bio,cloud} |
@@ -184,7 +185,7 @@ Last-Update: Sun, 05 Jul 2020 01:42:04 +0000
libvistaio | 1 | {imaging-dev} |
logol | 1 | {bio} |
nanook | 1 | {bio,covid-19} |
- ngs-sdk | 1 | {bio-dev} |
+ opencfu | 1 | {laboratory} |
openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
pbcopper | 1 | {bio-dev} |
@@ -195,7 +196,6 @@ Last-Update: Sun, 05 Jul 2020 01:42:04 +0000
python-scitrack | 1 | {covid-19} |
q2templates | 1 | {bio} |
relion | 1 | {bio} |
- sift | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
velvetoptimiser | 1 | {bio} |
@@ -248,7 +248,7 @@ Last-Update: Sun, 05 Jul 2020 01:42:04 +0000
mssstest | 0 | {tools} |
murasaki | 0 | {bio} |
nanosv | 0 | {bio,covid-19} |
- opencfu | 0 | {laboratory} |
+ ngs-sdk | 0 | {bio-dev} |
orthanc-imagej | 0 | {imaging} |
papyrus | 0 | {imaging-dev} |
parallel-fastq-dump | 0 | {covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/6108573e93bfb7cfe2b6486f0e18c48fd8228bdb
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/6108573e93bfb7cfe2b6486f0e18c48fd8228bdb
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