Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
2583d6cf by Andreas Tille at 2020-07-06T13:44:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,80 +1,79 @@
-Last-Update: Mon, 06 Jul 2020 01:42:03 +0000
+Last-Update: Mon, 06 Jul 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 188 | {covid-19,imaging} |
- orthanc | 96 | {covid-19,imaging,practice} |
- gdcm | 45 | {imaging-dev} |
- orthanc-wsi | 45 | {his,practice,covid-19,laboratory,imaging,oncology} |
- htsjdk | 33 | {bio-dev} |
- dcm2niix | 22 | {imaging} |
- dicom3tools | 22 | {imaging} |
- dicomscope | 22 | {imaging} |
- gnumed-server | 19 | {practice,covid-19} |
+ dcmtk | 186 | {covid-19,imaging} |
+ orthanc | 93 | {covid-19,imaging,practice} |
+ gdcm | 44 | {imaging-dev} |
+ orthanc-wsi | 43 | {his,practice,covid-19,laboratory,imaging,oncology} |
+ htsjdk | 32 | {bio-dev} |
+ dcm2niix | 25 | {imaging} |
+ dicom3tools | 24 | {imaging} |
+ dicomscope | 24 | {imaging} |
+ gdcm | 18 | {covid-19,imaging} |
ngs-sdk | 18 | {bio-dev} |
- gdcm | 17 | {covid-19,imaging} |
- invesalius | 14 | {imaging} |
- gdcm | 13 | {imaging-dev} |
- insighttoolkit4 | 13 | {imaging-dev} |
+ gnumed-server | 17 | {practice,covid-19} |
+ invesalius | 15 | {imaging} |
+ gdcm | 14 | {imaging-dev} |
+ minc-tools | 13 | {imaging} |
+ pixelmed | 13 | {imaging} |
+ insighttoolkit4 | 12 | {imaging-dev} |
jebl2 | 12 | {bio-dev} |
- minc-tools | 12 | {imaging} |
- pixelmed | 11 | {imaging} |
- biosig4c++ | 9 | {physics,imaging} |
- ngs-sdk | 9 | {bio-dev} |
- openslide | 9 | {imaging} |
- vtk-dicom | 9 | {imaging} |
+ vtk-dicom | 12 | {imaging} |
+ biosig4c++ | 10 | {physics,imaging} |
+ openslide | 10 | {imaging} |
+ adun.app | 9 | {bio} |
+ libdivsufsort | 9 | {bio-dev} |
+ psychopy | 9 | {psychology} |
dicompyler | 8 | {oncology} |
- libdivsufsort | 8 | {bio-dev} |
- orthanc-webviewer | 8 | {imaging} |
+ king | 8 | {imaging,typesetting} |
+ lagan | 8 | {bio} |
+ melting | 8 | {bio,cloud} |
+ ngs-sdk | 8 | {bio-dev} |
plastimatch | 8 | {imaging} |
- psychopy | 8 | {psychology} |
- adun.app | 7 | {bio} |
- king | 7 | {imaging,typesetting} |
- lagan | 7 | {bio} |
libminc | 7 | {imaging-dev} |
librg-utils-perl | 7 | {bio} |
- melting | 7 | {bio,cloud} |
- orthanc-dicomweb | 7 | {imaging,covid-19} |
- pymia | 7 | {imaging-dev} |
+ orthanc-webviewer | 7 | {imaging} |
stacks | 7 | {bio} |
treeview | 7 | {bio-phylogeny,bio} |
ea-utils | 6 | {bio} |
king-probe | 6 | {bio} |
- obitools | 6 | {bio} |
- orthanc-mysql | 6 | {imaging} |
+ orthanc-dicomweb | 6 | {imaging,covid-19} |
paraclu | 6 | {cloud,bio} |
anfo | 5 | {bio,cloud} |
biojava-live | 5 | {bio-dev} |
+ biomaj3-cli | 5 | {cloud} |
fastlink | 5 | {cloud,bio} |
getdata | 5 | {bio} |
mlv-smile | 5 | {bio,cloud} |
ncbi-seg | 5 | {bio} |
- orthanc-postgresql | 5 | {imaging} |
+ obitools | 5 | {bio} |
+ orthanc-mysql | 5 | {imaging} |
sibsim4 | 5 | {bio,cloud} |
sigma-align | 5 | {bio-phylogeny,cloud,bio} |
staden | 5 | {bio} |
zalign | 5 | {cloud,bio} |
bart-view | 4 | {imaging} |
- biomaj3-cli | 4 | {cloud} |
+ biomaj3-daemon | 4 | {bio} |
elastix | 4 | {imaging} |
gatb-core | 4 | {bio} |
- microbegps | 4 | {bio} |
mipe | 4 | {cloud,bio} |
- mrs | 4 | {bio} |
neobio | 4 | {cloud,bio} |
+ orthanc-postgresql | 4 | {imaging} |
phyutility | 4 | {bio,cloud} |
piler | 4 | {bio} |
predictprotein | 4 | {bio} |
+ pymia | 4 | {imaging-dev} |
qrisk2 | 4 | {practice} |
- seqmagick | 4 | {covid-19,bio} |
- seqsero | 4 | {bio} |
+ rdp-alignment | 4 | {bio} |
+ rdp-readseq | 4 | {bio} |
+ scythe | 4 | {bio} |
snap-aligner | 4 | {bio} |
spread-phy | 4 | {bio-phylogeny,bio} |
squizz | 4 | {bio,cloud} |
transtermhp | 4 | {bio} |
ampliconnoise | 3 | {cloud,bio} |
bandage | 3 | {bio} |
- biomaj3-daemon | 3 | {bio} |
brig | 3 | {bio} |
busco | 3 | {covid-19,bio} |
delly | 3 | {bio,covid-19} |
@@ -90,20 +89,20 @@ Last-Update: Mon, 06 Jul 2020 01:42:03 +0000
maffilter | 3 | {bio} |
mauve-aligner | 3 | {bio} |
mhap | 3 | {bio-ngs,bio} |
+ microbegps | 3 | {bio} |
multiqc | 3 | {bio,covid-19} |
+ nutsqlite | 3 | {tools} |
perm | 3 | {cloud,bio} |
placnet | 3 | {bio} |
proalign | 3 | {bio-phylogeny,bio} |
probabel | 3 | {cloud,bio} |
- rdp-alignment | 3 | {bio} |
rdp-classifier | 3 | {bio} |
- rdp-readseq | 3 | {bio} |
relion | 3 | {bio} |
- runcircos-gui | 3 | {bio} |
saint | 3 | {bio} |
salmon | 3 | {bio,covid-19} |
- scythe | 3 | {bio} |
segemehl | 3 | {bio} |
+ seqmagick | 3 | {covid-19,bio} |
+ seqsero | 3 | {bio} |
tnseq-transit | 3 | {covid-19,bio} |
tracetuner | 3 | {bio} |
tvc | 3 | {bio} |
@@ -136,11 +135,12 @@ Last-Update: Mon, 06 Jul 2020 01:42:03 +0000
lamarc | 2 | {bio} |
libctapimkt | 2 | {practice} |
libpal-java | 2 | {bio-dev} |
+ libsbml | 2 | {bio-dev} |
metaphlan2 | 2 | {bio} |
mptp | 2 | {bio} |
+ mrs | 2 | {bio} |
murasaki | 2 | {bio} |
ncbi-vdb | 2 | {bio-dev} |
- nutsqlite | 2 | {tools} |
oscar | 2 | {practice,tools,data} |
patman | 2 | {bio} |
phast | 2 | {bio} |
@@ -152,11 +152,11 @@ Last-Update: Mon, 06 Jul 2020 01:42:03 +0000
qcumber | 2 | {bio} |
quorum | 2 | {bio} |
radiant | 2 | {bio} |
- rambo-k | 2 | {bio} |
rampler | 2 | {bio} |
repeatmasker-recon | 2 | {bio} |
roguenarok | 2 | {bio} |
rtax | 2 | {cloud,bio} |
+ runcircos-gui | 2 | {bio} |
samblaster | 2 | {covid-19,bio} |
samtools-legacy | 2 | {bio-dev} |
scrm | 2 | {bio} |
@@ -171,17 +171,15 @@ Last-Update: Mon, 06 Jul 2020 01:42:03 +0000
surankco | 2 | {bio} |
sweed | 2 | {bio} |
yaha | 2 | {bio} |
- atropos | 1 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
blasr | 1 | {bio,bio-ngs} |
cat-bat | 1 | {bio,covid-19} |
+ ctn | 1 | {imaging-dev} |
cufflinks | 1 | {cloud,bio} |
embassy-phylip | 1 | {bio,cloud} |
gatb-core | 1 | {bio-dev} |
htscodecs | 1 | {covid-19,bio-dev} |
- libchado-perl | 1 | {bio-dev} |
libdisorder | 1 | {bio-dev} |
- libsbml | 1 | {bio-dev} |
libvistaio | 1 | {imaging-dev} |
logol | 1 | {bio} |
nanook | 1 | {bio,covid-19} |
@@ -192,15 +190,17 @@ Last-Update: Mon, 06 Jul 2020 01:42:03 +0000
pbdagcon | 1 | {bio} |
phipack | 1 | {bio} |
plasmidseeker | 1 | {bio} |
- python-py2bit | 1 | {bio,bio-dev} |
python-scitrack | 1 | {covid-19} |
q2templates | 1 | {bio} |
+ rambo-k | 1 | {bio} |
relion | 1 | {bio} |
thesias | 1 | {bio,covid-19} |
trace2dbest | 1 | {bio} |
velvetoptimiser | 1 | {bio} |
+ volpack | 1 | {imaging-dev} |
wtdbg2 | 1 | {covid-19} |
acedb | 0 | {cloud,bio} |
+ atropos | 0 | {bio} |
augur | 0 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
@@ -208,7 +208,6 @@ Last-Update: Mon, 06 Jul 2020 01:42:03 +0000
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
- ctn | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
@@ -225,6 +224,7 @@ Last-Update: Mon, 06 Jul 2020 01:42:03 +0000
libbpp-raa | 0 | {bio-dev} |
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
+ libchado-perl | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
@@ -254,6 +254,7 @@ Last-Update: Mon, 06 Jul 2020 01:42:03 +0000
parallel-fastq-dump | 0 | {covid-19} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
+ python-py2bit | 0 | {bio,bio-dev} |
quicktree | 0 | {bio,covid-19,bio-phylogeny} |
relion | 0 | {bio} |
relion | 0 | {bio-dev} |
@@ -270,7 +271,6 @@ Last-Update: Mon, 06 Jul 2020 01:42:03 +0000
tophat-recondition | 0 | {bio,covid-19} |
varna | 0 | {bio} |
varscan | 0 | {covid-19,bio} |
- volpack | 0 | {imaging-dev} |
vtk-dicom | 0 | {imaging-dev} |
bustools | -1 | {bio,covid-19} |
pycoqc | -1 | {covid-19,bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2583d6cf8ca3a09ff873e4064c9958bb4adca406
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2583d6cf8ca3a09ff873e4064c9958bb4adca406
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