[med-svn] [Git][med-team/vienna-rna][master] Lintian-error-free

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / vienna-rna


Commits:
af6e7fb0 by Steffen Moeller at 2020-07-06T18:45:08+02:00
Lintian-error-free

- - - - -


6 changed files:

- debian/copyright
- debian/librna-perl.install
- + debian/patches/addHelp2ManWrapper.patch
- debian/patches/series
- debian/patches/tutorial.patch
- debian/rules


Changes:

=====================================
debian/copyright
=====================================
@@ -92,14 +92,6 @@ Files-Excluded:
         src/RNAlocmin/RNAlocmin_cmdline.h
         src/RNAlocmin/config.h.in
 	*/autom4te.cache
-        config/compile
-        config/depcomp
-        config/install-sh
-        config/ltmain.sh
-        config/missing
-        config/test-driver
-        config/texinfo.tex
-        configure
 	doc/refman-html
 	install-sh
 	interfaces/Perl/RNA.pm
@@ -143,7 +135,7 @@ License: non-free
 
 Files: src/ViennaRNA/naview.c
 Copyright: 1988 Robert E. Bruccoleri
-License: non-free
+License: non-commercial
  Copying of this software, in whole or in part, is permitted
  provided that the copies are not made for commercial purposes,
  appropriate credit for the use of the software is given, this
@@ -167,9 +159,9 @@ License: non-free_no-fee
 
 Files: debian/*
 Copyright: 2011 Alex Mestiashvili <alex at biotec.tu-dresden.de>
-   2011 Andreas Tille <tille at debian.org>
-   2014 Olivier Sallou <osallou at debian.org>
-   2019 Steffen Moeller <moeller at debian.org>
+           2011      Andreas Tille <tille at debian.org>
+           2014      Olivier Sallou <osallou at debian.org>
+           2019-2020 Steffen Moeller <moeller at debian.org>
 License: GPL-2+
  This program is free software; you can redistribute it
  and/or modify it under the terms of the GNU General Public


=====================================
debian/librna-perl.install
=====================================
@@ -1 +1 @@
-usr/share/perl
+usr/share/perl/*/RNA	usr/share/perl5


=====================================
debian/patches/addHelp2ManWrapper.patch
=====================================
@@ -0,0 +1,19 @@
+Index: vienna-rna/man/help2manWrapper.sh
+===================================================================
+--- /dev/null
++++ vienna-rna/man/help2manWrapper.sh
+@@ -0,0 +1,14 @@
++#!/bin/bash
++#
++
++HELP2MAN=$1
++PROGNAME=`basename $2 .ggo`
++PROGPATH=`dirname $2`
++
++${HELP2MAN} \
++    -N \
++    --help-option=--detailed-help \
++    --opt-include=./include/ref_package.inc \
++    --opt-include=./include/${PROGNAME}.inc \
++    --opt-include=./include/ref_energy_par.inc \
++    "./cmdlopt.sh ${PROGPATH}/${PROGNAME}"


=====================================
debian/patches/series
=====================================
@@ -1,2 +1,3 @@
 g2.patch
 tutorial.patch
+addHelp2ManWrapper.patch


=====================================
debian/patches/tutorial.patch
=====================================
@@ -2,7 +2,7 @@ Index: vienna-rna/RNA-Tutorial/Makefile.am
 ===================================================================
 --- vienna-rna.orig/RNA-Tutorial/Makefile.am
 +++ vienna-rna/RNA-Tutorial/Makefile.am
-@@ -116,11 +116,11 @@ tut_data_DATA = $(srcdir)/Data/5S.seq \
+@@ -111,11 +111,11 @@ tut_data_DATA = $(srcdir)/Data/5S.seq \
                  $(srcdir)/Data/RNaseP.aln \
                  $(srcdir)/Data/RNaseP.dnd
  


=====================================
debian/rules
=====================================
@@ -7,6 +7,7 @@
 
 override_dh_auto_configure:
 	CFLAGS="-I/usr/include/json-c/ -I/usr/include/libsvm/"  CXXFLAGS="-I/usr/include/json-c/ -I/usr/include/libsvm/" dh_auto_configure -- --with-cluster --without-python --with-python3 --without-forester --without-doc --without-tutorial
+	if [ -r man/help2manWrapper.sh ]; then chmod +x man/help2manWrapper.sh; fi
 
 override_dh_auto_build:
 	if [ ! -d src/cthreadpool ]; then \



View it on GitLab: https://salsa.debian.org/med-team/vienna-rna/-/commit/af6e7fb08034c5a49904c95625e0302dc9c08842

-- 
View it on GitLab: https://salsa.debian.org/med-team/vienna-rna/-/commit/af6e7fb08034c5a49904c95625e0302dc9c08842
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