[med-svn] [Git][med-team/snap-aligner][master] 3 commits: update my email address

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / snap-aligner


Commits:
c6374c05 by Michael R. Crusoe at 2020-07-09T11:08:18+02:00
update my email address

- - - - -
616a8ba6 by Michael R. Crusoe at 2020-07-09T11:11:26+02:00
add upstream repository to metadata

- - - - -
dbd8ee16 by Michael R. Crusoe at 2020-07-09T11:13:51+02:00
Fixed another spelling error

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/patches/spelling
- debian/upstream/metadata


Changes:

=====================================
debian/changelog
=====================================
@@ -15,7 +15,9 @@ snap-aligner (1.0~beta.18+dfsg-4) unstable; urgency=medium
   * Remove trailing whitespace in debian/copyright (routine-update)
   * Add salsa-ci file (routine-update)
   * Rules-Requires-Root: no (routine-update)
-  * Set upstream metadata fields: Bug-Database, Bug-Submit.
+  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
+    Repository-Browse
+  * Fixed another spelling error
 
  -- Michael R. Crusoe <crusoe at debian.org>  Thu, 09 Jul 2020 11:00:43 +0200
 


=====================================
debian/control
=====================================
@@ -1,6 +1,6 @@
 Source: snap-aligner
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Michael R. Crusoe <michael.crusoe at gmail.com>,
+Uploaders: Michael R. Crusoe <crusoe at debian.org>,
            Pranav Ballaney <ballaneypranav at gmail.com>
 Section: science
 Priority: optional


=====================================
debian/patches/spelling
=====================================
@@ -30,3 +30,14 @@ Forwarded: https://github.com/amplab/snap/pull/66
                        " following type specifiers (which are case sensitive):\n"
                        "    -fastq\n"
                        "    -compressedFastq\n"
+--- snap-aligner.orig/SNAPLib/GenomeIndex.cpp
++++ snap-aligner/SNAPLib/GenomeIndex.cpp
+@@ -1284,7 +1284,7 @@
+                 WriteErrorMessage("HashTable[%d] has %lld used elements\n",j,(_int64)index->hashTables[j]->GetUsedElementCount());
+             }
+             WriteErrorMessage("IndexBuilder: exceeded size of hash table %d.\n"
+-                    "If you're indexing a non-human genome, make sure not to pass the -hg19 option.  Otheriwse, use -exact or increase slack with -h.\n",
++                    "If you're indexing a non-human genome, make sure not to pass the -hg19 option.  Otherwise, use -exact or increase slack with -h.\n",
+                     whichHashTable);
+             soft_exit(1);
+         }


=====================================
debian/upstream/metadata
=====================================
@@ -1,5 +1,7 @@
 Bug-Database: https://github.com/amplab/snap/issues
 Bug-Submit: https://github.com/amplab/snap/issues/new
+Repository-Browse: https://github.com/amplab/snap
+Repository: https://github.com/amplab/snap.git
 Reference:
  Author: >
   Matei Zaharia and William J. Bolosky and Kristal Curtis and Armando



View it on GitLab: https://salsa.debian.org/med-team/snap-aligner/-/compare/dbce13f7e84a1ad8f51d322a7be114d7c023a9c3...dbd8ee1605499927403168286d444a4ee8728aec

-- 
View it on GitLab: https://salsa.debian.org/med-team/snap-aligner/-/compare/dbce13f7e84a1ad8f51d322a7be114d7c023a9c3...dbd8ee1605499927403168286d444a4ee8728aec
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